UPF0061 - PFAM28P - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

UPF0061 - Uncharacterized ACR, YdiU/UPF0061 family

PFAM:	PF02696	Sequences: PFLTLNFDNSYARLPEAFYSRVAPTPVPAPRLVALNEELAAELGLDPAALDSPEFAAVFSGNRLPEGAEPLAQAYAGHQFGHFAPQLGDGRAILLGEVIDPDGRRWDLQLKGSGRTPYSRGGDGRAVLRSSLREYLCSEAMHALGIPTTRALALVTTGEPVYREGNPTPEPGAVLTRVAPSHIRFGTFEYFAARGDTELLRQLADYVIARHYPELADAENPYLALLEEVVERQARLIAQWMRVGFVHGVMNTDNMSISGETIDYGPCAFMDAYDPGTVFSSIDHQGRYAYGNQPAIAQWNLARLAEALLPLIAVEALEAALEGFPELYEAAWLAGMRAKLGLAELDETEEEGDAALIEDLLALMQENEADYTLFFRRLSDAAAGDAADDASLFLDEPLDDEFLAAFDAWLARWRARLAREPLESDAERAAAMRAVNPKYIPRNHLVEEAIEAAAEQGDFSPFERLLEVLQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	470 (449)
Sequences:	10771 (7441)
Seq/√Len:	351.1
META:	0.695

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
242_R	335_G	4.560	1.00
359_D	412_R	4.055	1.00
204_A	222_Y	3.449	1.00
20_S	118_Y	3.134	1.00
183_I	207_V	3.078	1.00
21_R	69_E	3.044	1.00
99_I	105_R	2.988	1.00
237_I	297_A	2.943	1.00
214_E	228_E	2.912	1.00
196_D	199_L	2.866	1.00
353_D	416_R	2.865	1.00
146_I	243_V	2.853	1.00
360_L	374_F	2.836	1.00
303_R	306_E	2.819	1.00
369_A	374_F	2.747	1.00
131_S	154_L	2.557	1.00
447_E	451_E	2.492	1.00
235_R	331_A	2.460	1.00
57_A	63_R	2.372	1.00
364_M	374_F	2.370	1.00
227_E	320_A	2.352	1.00
39_L	42_E	2.349	1.00
439_Y	468_V	2.338	1.00
65_P	68_A	2.335	1.00
452_A	461_P	2.301	1.00
162_Y	169_P	2.284	1.00
115_R	121_G	2.276	1.00
231_E	327_L	2.271	1.00
39_L	178_V	2.247	1.00
33_V	459_F	2.204	1.00
227_E	323_G	2.191	1.00
297_A	324_F	2.183	1.00
28_P	159_E	2.178	1.00
350_E	419_R	2.130	1.00
209_A	216_A	2.104	1.00
255_M	297_A	2.082	1.00
445_L	448_E	2.066	1.00
53_P	57_A	2.065	1.00
379_S	433_R	2.026	1.00
298_Q	325_P	1.996	1.00
100_D	106_W	1.995	1.00
160_P	169_P	1.965	1.00
73_Q	187_T	1.932	1.00
60_S	155_V	1.931	1.00
100_D	104_R	1.908	1.00
424_S	427_E	1.884	1.00
31_R	156_T	1.874	1.00
314_V	317_L	1.866	1.00
239_Q	335_G	1.851	1.00
314_V	318_E	1.850	1.00
27_V	62_N	1.843	1.00
406_F	410_L	1.835	1.00
204_A	311_L	1.827	1.00
141_M	264_Y	1.806	1.00
233_Q	297_A	1.787	1.00
275_P	365_Q	1.757	1.00
431_A	435_V	1.754	1.00
55_F	59_F	1.749	1.00
52_S	55_F	1.747	1.00
188_F	257_I	1.739	1.00
153_A	176_T	1.725	1.00
205_D	222_Y	1.714	1.00
230_V	320_A	1.710	1.00
452_A	458_D	1.706	1.00
17_A	199_L	1.705	1.00
231_E	331_A	1.686	1.00
32_L	56_A	1.668	1.00
318_E	322_E	1.621	1.00
366_E	405_A	1.620	1.00
315_E	318_E	1.617	1.00
8_D	13_R	1.615	1.00
201_R	205_D	1.609	1.00
74_A	190_Y	1.601	1.00
449_A	465_L	1.600	1.00
454_A	457_G	1.594	1.00
212_Y	232_R	1.594	1.00
313_A	317_L	1.586	1.00
185_F	255_M	1.581	1.00
429_A	433_R	1.575	1.00
340_L	360_L	1.574	1.00
331_A	334_A	1.573	1.00
373_L	377_R	1.571	1.00
136_L	462_F	1.567	1.00
313_A	316_A	1.558	1.00
451_E	455_E	1.554	1.00
223_L	316_A	1.545	1.00
42_E	106_W	1.544	1.00
191_F	199_L	1.535	1.00
237_I	250_M	1.533	1.00
250_M	297_A	1.527	1.00
136_L	441_P	1.515	1.00
274_D	365_Q	1.509	1.00
235_R	239_Q	1.508	1.00
224_A	227_E	1.506	1.00
362_A	366_E	1.502	1.00
289_A	292_N	1.493	1.00
44_G	101_P	1.487	1.00
37_E	51_D	1.475	1.00
168_T	455_E	1.469	1.00
331_A	335_G	1.463	1.00
380_D	433_R	1.460	1.00
207_V	257_I	1.456	1.00
24_P	93_I	1.454	1.00
36_N	39_L	1.439	1.00
323_G	327_L	1.432	1.00
312_I	317_L	1.413	1.00
336_M	357_I	1.412	1.00
228_E	231_E	1.405	1.00
18_F	191_F	1.404	1.00
389_D	393_F	1.402	1.00
226_L	230_V	1.397	1.00
231_E	323_G	1.396	1.00
20_S	117_P	1.393	1.00
228_E	232_R	1.389	1.00
180_P	260_E	1.380	1.00
199_L	202_Q	1.380	1.00
22_V	117_P	1.373	1.00
183_I	188_F	1.363	1.00
139_E	150_R	1.362	1.00
449_A	461_P	1.360	1.00
332_W	336_M	1.359	1.00
71_L	94_L	1.359	1.00
292_N	295_A	1.355	1.00
448_E	461_P	1.348	1.00
226_L	305_A	1.347	1.00
201_R	222_Y	1.347	1.00
36_N	135_Y	1.347	1.00
298_Q	302_A	1.345	1.00
390_A	393_F	1.343	1.00
212_Y	228_E	1.338	1.00
50_L	55_F	1.331	1.00
333_L	354_A	1.328	1.00
234_A	238_A	1.314	1.00
246_V	270_M	1.307	1.00
354_A	358_E	1.305	1.00
333_L	337_R	1.303	1.00
316_A	320_A	1.291	1.00
337_R	349_E	1.290	1.00
205_D	221_P	1.290	1.00
276_G	291_G	1.285	1.00
360_L	364_M	1.285	1.00
136_L	466_L	1.284	1.00
155_V	176_T	1.278	1.00
215_L	221_P	1.272	1.00
108_L	178_V	1.256	1.00
108_L	176_T	1.247	1.00
207_V	225_L	1.243	1.00
319_A	322_E	1.240	1.00
208_I	225_L	1.234	1.00
34_A	463_E	1.232	1.00
35_L	50_L	1.230	1.00
10_S	206_Y	1.230	1.00
295_A	298_Q	1.221	1.00
189_E	193_A	1.220	1.00
33_V	156_T	1.217	1.00
18_F	199_L	1.213	1.00
235_R	327_L	1.208	1.00
390_A	394_L	1.207	1.00
34_A	135_Y	1.203	1.00
391_S	394_L	1.202	1.00
238_A	331_A	1.197	1.00
49_A	52_S	1.195	1.00
197_T	201_R	1.190	1.00
204_A	225_L	1.189	1.00
127_V	170_E	1.189	1.00
225_L	229_V	1.185	1.00
73_Q	109_Q	1.183	1.00
290_Y	371_Y	1.180	1.00
147_P	239_Q	1.177	1.00
320_A	323_G	1.169	1.00
26_P	125_R	1.167	1.00
221_P	224_A	1.160	1.00
461_P	464_R	1.149	1.00
239_Q	242_R	1.144	1.00
33_V	128_L	1.143	1.00
246_V	277_T	1.141	1.00
404_A	408_A	1.141	1.00
126_A	131_S	1.135	1.00
452_A	456_Q	1.134	1.00
304_L	307_A	1.133	1.00
189_E	303_R	1.125	1.00
238_A	335_G	1.120	1.00
104_R	180_P	1.112	1.00
83_F	193_A	1.110	1.00
220_N	224_A	1.110	1.00
218_A	224_A	1.107	1.00
329_E	354_A	1.104	1.00
270_M	277_T	1.102	1.00
135_Y	151_A	1.101	1.00
352_G	355_A	1.099	1.00
34_A	462_F	1.098	1.00
151_A	175_L	1.096	1.00
185_F	233_Q	1.095	1.00
355_A	359_D	1.094	1.00
223_L	320_A	1.084	1.00
416_R	420_E	1.081	1.00
106_W	178_V	1.074	1.00
19_Y	71_L	1.073	1.00
225_L	308_L	1.073	1.00
410_L	414_R	1.073	1.00
86_Q	194_R	1.070	1.00
241_M	328_Y	1.067	1.00
125_R	159_E	1.067	1.00
231_E	235_R	1.060	1.00
430_A	434_A	1.055	1.00
315_E	319_A	1.054	1.00
255_M	301_L	1.049	1.00
148_T	264_Y	1.048	1.00
127_V	130_S	1.046	1.00
25_T	125_R	1.046	1.00
46_D	49_A	1.042	1.00
198_E	201_R	1.041	1.00
76_A	83_F	1.041	1.00
427_E	430_A	1.034	1.00
276_G	289_A	1.034	1.00
41_A	47_P	1.028	1.00
82_H	85_P	1.023	1.00
302_A	306_E	1.017	1.00
241_M	294_P	1.017	1.00
425_D	428_R	1.016	1.00
22_V	93_I	1.016	1.00
411_A	415_A	1.006	1.00
272_A	368_E	1.006	1.00
463_E	467_E	1.003	1.00
399_D	403_L	0.997	1.00
56_A	155_V	0.996	1.00
371_Y	375_F	0.995	1.00
274_D	277_T	0.992	1.00
223_L	312_I	0.991	1.00
227_E	231_E	0.990	1.00
76_A	84_A	0.987	1.00
54_E	63_R	0.987	1.00
126_A	173_A	0.985	1.00
131_S	175_L	0.985	1.00
17_A	196_D	0.984	1.00
28_P	125_R	0.984	1.00
326_E	330_A	0.979	1.00
34_A	466_L	0.977	1.00
35_L	40_A	0.977	1.00
350_E	353_D	0.972	1.00
8_D	105_R	0.972	1.00
93_I	113_S	0.971	1.00
336_M	371_Y	0.969	1.00
44_G	100_D	0.966	1.00
37_E	41_A	0.965	1.00
138_S	151_A	0.963	1.00
214_E	232_R	0.957	1.00
359_D	405_A	0.956	1.00
97_E	210_R	0.955	1.00
236_L	250_M	0.955	1.00
15_P	19_Y	0.954	1.00
40_A	50_L	0.952	1.00
59_F	153_A	0.951	1.00
32_L	35_L	0.951	1.00
216_A	221_P	0.949	1.00
441_P	446_V	0.948	1.00
337_R	342_L	0.945	1.00
137_C	267_C	0.942	1.00
197_T	310_P	0.939	1.00
188_F	204_A	0.935	1.00
105_R	206_Y	0.934	1.00
140_A	144_L	0.934	1.00
98_V	108_L	0.934	1.00
229_V	304_L	0.933	1.00
298_Q	321_L	0.930	1.00
460_S	464_R	0.930	1.00
408_A	412_R	0.929	1.00
132_L	450_I	0.928	1.00
376_R	379_S	0.926	1.00
59_F	176_T	0.926	1.00
15_P	202_Q	0.925	1.00
234_A	324_F	0.923	1.00
313_A	318_E	0.922	1.00
227_E	327_L	0.919	1.00
54_E	57_A	0.918	1.00
316_A	319_A	0.917	1.00
76_A	190_Y	0.916	1.00
161_V	172_G	0.913	1.00
452_A	460_S	0.913	1.00
333_L	357_I	0.913	1.00
225_L	257_I	0.910	1.00
56_A	59_F	0.910	1.00
246_V	279_F	0.910	1.00
377_R	380_D	0.910	1.00
204_A	208_I	0.907	1.00
24_P	64_L	0.905	1.00
243_V	339_K	0.905	1.00
192_A	310_P	0.905	1.00
137_C	446_V	0.904	1.00
49_A	55_F	0.902	1.00
208_I	221_P	0.902	1.00
42_E	102_D	0.899	1.00
449_A	462_F	0.892	1.00
128_L	132_L	0.891	1.00
358_E	362_A	0.890	1.00
226_L	312_I	0.890	1.00
212_Y	215_L	0.889	1.00
215_L	228_E	0.887	1.00
336_M	361_L	0.880	1.00
218_A	221_P	0.878	1.00
415_A	418_A	0.878	1.00
156_T	459_F	0.874	1.00
191_F	194_R	0.874	1.00
208_I	215_L	0.872	1.00
146_I	239_Q	0.871	1.00
338_A	435_V	0.870	1.00
220_N	316_A	0.870	1.00
206_Y	210_R	0.867	1.00
27_V	174_V	0.866	1.00
51_D	54_E	0.865	1.00
230_V	234_A	0.862	1.00
376_R	433_R	0.861	1.00
229_V	257_I	0.858	1.00
339_K	372_T	0.856	1.00
454_A	459_F	0.855	1.00
445_L	465_L	0.854	1.00
417_L	428_R	0.852	1.00
8_D	99_I	0.852	1.00
142_H	150_R	0.850	1.00
428_R	431_A	0.850	1.00
398_L	403_L	0.850	1.00
422_L	431_A	0.849	1.00
230_V	327_L	0.847	1.00
267_C	446_V	0.845	1.00
325_P	329_E	0.845	1.00
408_A	411_A	0.841	1.00
334_A	338_A	0.839	1.00
363_L	367_N	0.838	1.00
400_D	403_L	0.837	1.00
261_T	264_Y	0.836	1.00
15_P	18_F	0.836	1.00
235_R	335_G	0.834	1.00
74_A	86_Q	0.834	1.00
208_I	222_Y	0.833	1.00
382_A	425_D	0.831	1.00
27_V	60_S	0.830	1.00
270_M	290_Y	0.830	1.00
431_A	434_A	0.829	1.00
188_F	203_L	0.829	1.00
412_R	415_A	0.828	1.00
136_L	449_A	0.828	1.00
327_L	331_A	0.825	1.00
109_Q	176_T	0.824	1.00
200_L	307_A	0.823	1.00
64_L	70_P	0.822	1.00
92_A	109_Q	0.821	1.00
25_T	93_I	0.819	1.00
9_N	69_E	0.818	1.00
97_E	105_R	0.818	1.00
392_L	395_D	0.815	1.00
16_E	21_R	0.815	1.00
217_D	221_P	0.814	1.00
58_V	65_P	0.814	1.00
56_A	60_S	0.812	1.00
101_P	106_W	0.811	1.00
380_D	429_A	0.811	1.00
414_R	417_L	0.810	1.00
355_A	358_E	0.808	1.00
306_E	309_L	0.807	1.00
162_Y	168_T	0.807	1.00
382_A	385_D	0.805	1.00
27_V	159_E	0.805	1.00
323_G	326_E	0.802	1.00
47_P	55_F	0.801	1.00
35_L	55_F	0.801	1.00
57_A	62_N	0.800	1.00
43_L	178_V	0.799	1.00
9_N	13_R	0.799	1.00
29_A	158_G	0.799	1.00
42_E	100_D	0.798	1.00
389_D	394_L	0.798	1.00
164_E	170_E	0.798	1.00
447_E	455_E	0.798	1.00
94_L	107_D	0.796	1.00
233_Q	237_I	0.795	1.00
224_A	228_E	0.794	1.00
272_A	277_T	0.791	1.00
47_P	51_D	0.791	1.00
381_A	414_R	0.789	1.00
330_A	334_A	0.789	1.00
215_L	224_A	0.785	1.00
132_L	462_F	0.783	1.00
74_A	194_R	0.783	1.00
85_P	190_Y	0.783	1.00
222_Y	225_L	0.782	1.00
438_K	441_P	0.780	1.00
234_A	327_L	0.779	1.00
164_E	168_T	0.772	1.00
198_E	202_Q	0.771	1.00
83_F	194_R	0.771	1.00
305_A	317_L	0.770	1.00
376_R	438_K	0.769	1.00
451_E	456_Q	0.766	1.00
86_Q	190_Y	0.762	1.00
157_T	172_G	0.761	1.00
413_W	416_R	0.761	1.00
379_S	429_A	0.758	1.00
459_F	462_F	0.757	1.00
141_M	261_T	0.755	1.00
428_R	432_M	0.755	1.00
189_E	306_E	0.754	1.00
389_D	392_L	0.753	1.00
223_L	227_E	0.752	1.00
420_E	428_R	0.751	1.00
74_A	191_F	0.750	1.00
31_R	457_G	0.750	1.00
242_R	371_Y	0.748	1.00
38_E	41_A	0.746	1.00
426_A	430_A	0.746	1.00
135_Y	462_F	0.746	1.00
25_T	28_P	0.745	1.00
180_P	211_H	0.744	1.00
13_R	69_E	0.741	1.00
51_D	55_F	0.740	1.00
226_L	317_L	0.740	1.00
388_D	393_F	0.739	1.00
14_L	18_F	0.738	1.00
22_V	25_T	0.738	1.00
37_E	47_P	0.736	1.00
155_V	174_V	0.736	1.00
12_A	19_Y	0.735	1.00
410_L	413_W	0.733	1.00
356_L	412_R	0.733	1.00
196_D	200_L	0.729	0.99
390_A	407_D	0.724	0.99
309_L	314_V	0.723	0.99
388_D	391_S	0.721	0.99
107_D	211_H	0.721	0.99
201_R	221_P	0.718	0.99
298_Q	324_F	0.718	0.99
273_Y	371_Y	0.716	0.99
391_S	395_D	0.716	0.99
322_E	325_P	0.716	0.99
37_E	48_A	0.712	0.99
72_A	93_I	0.711	0.99
226_L	301_L	0.710	0.99
273_Y	290_Y	0.710	0.99
367_N	405_A	0.710	0.99
413_W	417_L	0.710	0.99
46_D	50_L	0.709	0.99
200_L	310_P	0.709	0.99
84_A	190_Y	0.705	0.99
376_R	380_D	0.705	0.99
183_I	211_H	0.703	0.99
27_V	125_R	0.702	0.99
381_A	410_L	0.699	0.99
356_L	360_L	0.698	0.99
158_G	457_G	0.698	0.99
356_L	416_R	0.698	0.99
39_L	150_R	0.696	0.99
327_L	330_A	0.695	0.99
451_E	454_A	0.692	0.99
238_A	242_R	0.692	0.99
42_E	104_R	0.691	0.99
230_V	323_G	0.691	0.99
205_D	208_I	0.690	0.99
52_S	56_A	0.689	0.99
255_M	300_N	0.686	0.99
25_T	115_R	0.685	0.99
405_A	408_A	0.684	0.99
242_R	336_M	0.682	0.99
64_L	68_A	0.682	0.99
409_W	413_W	0.681	0.99
407_D	411_A	0.681	0.99
464_R	468_V	0.680	0.99
234_A	331_A	0.680	0.99
326_E	329_E	0.680	0.99
226_L	321_L	0.679	0.99
33_V	462_F	0.679	0.99
302_A	321_L	0.679	0.99
137_C	141_M	0.678	0.99
38_E	42_E	0.678	0.99
180_P	258_S	0.677	0.99
414_R	418_A	0.676	0.99
208_I	216_A	0.675	0.99
221_P	225_L	0.671	0.99
237_I	255_M	0.669	0.99
156_T	171_P	0.669	0.99
383_A	433_R	0.669	0.99
222_Y	311_L	0.665	0.99
197_T	200_L	0.665	0.99
239_Q	331_A	0.664	0.99
74_A	118_Y	0.660	0.99
361_L	371_Y	0.658	0.99
206_Y	211_H	0.658	0.99
298_Q	322_E	0.656	0.99
64_L	95_L	0.655	0.99
363_L	405_A	0.654	0.99
171_P	455_E	0.652	0.99
109_Q	174_V	0.650	0.99
337_R	340_L	0.649	0.99
73_Q	107_D	0.648	0.99
359_D	363_L	0.645	0.99
161_V	164_E	0.644	0.99
388_D	392_L	0.640	0.99
348_T	420_E	0.639	0.99
337_R	350_E	0.637	0.99
373_L	438_K	0.636	0.99
27_V	30_P	0.636	0.99
295_A	325_P	0.636	0.99
295_A	329_E	0.635	0.99
200_L	204_A	0.634	0.99
83_F	86_Q	0.633	0.99
80_F	84_A	0.630	0.99
335_G	338_A	0.630	0.99
10_S	210_R	0.628	0.98
205_D	209_A	0.628	0.98
191_F	202_Q	0.625	0.98
252_T	299_W	0.622	0.98
352_G	416_R	0.622	0.98
246_V	278_V	0.622	0.98
399_D	407_D	0.620	0.98
462_F	466_L	0.620	0.98
106_W	260_E	0.619	0.98
183_I	206_Y	0.619	0.98
448_E	464_R	0.618	0.98
201_R	204_A	0.617	0.98
79_Q	83_F	0.617	0.98
360_L	375_F	0.615	0.98
448_E	452_A	0.614	0.98
250_M	255_M	0.614	0.98
10_S	105_R	0.613	0.98
11_Y	73_Q	0.613	0.98
132_L	441_P	0.612	0.98
230_V	301_L	0.611	0.98
35_L	59_F	0.610	0.98
164_E	281_S	0.609	0.98
275_P	291_G	0.608	0.98
225_L	304_L	0.608	0.98
58_V	68_A	0.606	0.98
333_L	358_E	0.606	0.98
39_L	43_L	0.606	0.98
379_S	435_V	0.605	0.98
107_D	182_H	0.604	0.98
241_M	332_W	0.601	0.98
215_L	218_A	0.600	0.98
340_L	357_I	0.600	0.98
318_E	321_L	0.600	0.98
235_R	238_A	0.599	0.98
207_V	212_Y	0.599	0.98
183_I	257_I	0.598	0.98
337_R	353_D	0.597	0.98
445_L	449_A	0.597	0.98
121_G	284_H	0.597	0.98
446_V	450_I	0.597	0.98
115_R	125_R	0.594	0.98
226_L	320_A	0.594	0.98
308_L	312_I	0.594	0.98
415_A	419_R	0.593	0.98
381_A	384_G	0.593	0.98
427_E	431_A	0.593	0.98
48_A	51_D	0.591	0.98
227_E	319_A	0.590	0.98
232_R	259_G	0.589	0.98
433_R	438_K	0.588	0.98
128_L	156_T	0.587	0.98
23_A	69_E	0.586	0.98
241_M	290_Y	0.585	0.98
419_R	422_L	0.585	0.98
86_Q	191_F	0.585	0.98
202_Q	206_Y	0.585	0.98
222_Y	312_I	0.584	0.98
338_A	431_A	0.583	0.98
179_A	262_I	0.583	0.98
18_F	74_A	0.582	0.98
414_R	425_D	0.581	0.97
9_N	12_A	0.581	0.97
363_L	366_E	0.579	0.97
274_D	291_G	0.579	0.97
309_L	317_L	0.577	0.97
23_A	26_P	0.577	0.97
307_A	310_P	0.576	0.97
67_G	96_G	0.575	0.97
33_V	154_L	0.575	0.97
407_D	410_L	0.574	0.97
187_T	190_Y	0.574	0.97
192_A	306_E	0.574	0.97
142_H	148_T	0.574	0.97
82_H	285_Q	0.573	0.97
212_Y	225_L	0.572	0.97
463_E	466_L	0.572	0.97
239_Q	338_A	0.570	0.97
393_F	398_L	0.570	0.97
161_V	170_E	0.570	0.97
41_A	46_D	0.569	0.97
58_V	64_L	0.568	0.97
22_V	113_S	0.568	0.97
383_A	425_D	0.566	0.97
68_A	96_G	0.566	0.97
132_L	459_F	0.566	0.97
215_L	220_N	0.566	0.97
235_R	334_A	0.566	0.97
278_V	281_S	0.564	0.97
334_A	349_E	0.564	0.97
23_A	64_L	0.563	0.97
199_L	203_L	0.561	0.97
359_D	362_A	0.560	0.97
51_D	56_A	0.560	0.97
139_E	142_H	0.559	0.97
413_W	428_R	0.558	0.97
147_P	236_L	0.557	0.97
107_D	206_Y	0.557	0.97
349_E	352_G	0.555	0.97
58_V	63_R	0.554	0.97
460_S	463_E	0.552	0.97
157_T	174_V	0.552	0.97
110_L	113_S	0.551	0.97
227_E	230_V	0.551	0.97
170_E	447_E	0.551	0.97
236_L	239_Q	0.549	0.96
44_G	102_D	0.549	0.96
185_F	304_L	0.548	0.96
360_L	369_A	0.547	0.96
132_L	154_L	0.547	0.96
17_A	202_Q	0.547	0.96
30_P	60_S	0.547	0.96
17_A	198_E	0.546	0.96
328_Y	332_W	0.546	0.96
336_M	375_F	0.545	0.96
87_L	118_Y	0.543	0.96
11_Y	187_T	0.542	0.96
36_N	139_E	0.542	0.96
39_L	106_W	0.542	0.96
160_P	171_P	0.541	0.96
432_M	437_P	0.541	0.96
363_L	406_F	0.541	0.96
382_A	429_A	0.541	0.96
270_M	273_Y	0.540	0.96
400_D	404_A	0.540	0.96
437_P	440_I	0.539	0.96
102_D	106_W	0.538	0.96
97_E	107_D	0.536	0.96
187_T	191_F	0.535	0.96
137_C	269_F	0.534	0.96
14_L	17_A	0.532	0.96
74_A	84_A	0.532	0.96
309_L	312_I	0.532	0.96
35_L	52_S	0.530	0.96
347_E	352_G	0.529	0.96
62_N	174_V	0.528	0.96
445_L	468_V	0.525	0.95
34_A	154_L	0.524	0.95
154_L	462_F	0.523	0.95
372_T	440_I	0.522	0.95
425_D	429_A	0.522	0.95
62_N	125_R	0.521	0.95
209_A	221_P	0.520	0.95
433_R	437_P	0.520	0.95
242_R	357_I	0.519	0.95
22_V	71_L	0.517	0.95
127_V	173_A	0.517	0.95
49_A	58_V	0.517	0.95
273_Y	277_T	0.517	0.95
448_E	451_E	0.517	0.95
207_V	229_V	0.516	0.95
246_V	290_Y	0.515	0.95
32_L	55_F	0.515	0.95
315_E	322_E	0.515	0.95
342_L	348_T	0.513	0.95
137_C	268_A	0.513	0.95
35_L	47_P	0.510	0.95
98_V	106_W	0.510	0.95
11_Y	15_P	0.508	0.95
296_I	300_N	0.508	0.95
222_Y	226_L	0.507	0.95
73_Q	94_L	0.507	0.95
76_A	82_H	0.506	0.94
329_E	333_L	0.505	0.94
12_A	71_L	0.505	0.94
80_F	85_P	0.504	0.94
353_D	356_L	0.502	0.94
382_A	428_R	0.500	0.94
312_I	316_A	0.500	0.94
38_E	143_A	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1nd4A	2	0.4787	55.2	0.979	Contact Map
3dxpA	2	0.5979	52.5	0.979	Contact Map
2ppqA	2	0.5617	50.1	0.979	Contact Map
3atsA	1	0.5	35	0.981	Contact Map
4oh4A	1	0.517	32.1	0.981	Contact Map
4h05A	1	0.4766	30.7	0.982	Contact Map
2olcA	3	0.5319	25	0.982	Contact Map
1zylA	1	0.6128	24.9	0.982	Contact Map
2pywA	2	0.7553	19.4	0.983	Contact Map
4orkA	1	0.5468	19	0.983	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0122 seconds.