GREMLIN Database
YMF19 - Plant ATP synthase F0
PFAM: PF02326 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 86 (75)
Sequences: 6498 (3578)
Seq/√Len: 413.1
META: 0.928

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
68_K72_D2.9801.00
51_E54_R2.7321.00
54_R58_E2.6811.00
42_R46_A2.4511.00
4_D7_T2.1141.00
53_E57_E1.9791.00
64_A68_K1.9111.00
23_Y27_S1.7871.00
46_A50_A1.7671.00
43_K47_G1.7491.00
26_L31_L1.7261.00
57_E61_A1.7141.00
61_A65_A1.6851.00
40_E44_R1.6721.00
24_L28_R1.6681.00
12_L16_A1.6481.00
63_L67_E1.6291.00
29_V33_R1.5591.00
57_E60_E1.4951.00
56_K60_E1.4911.00
13_F17_I1.4861.00
21_V25_L1.4841.00
59_A63_L1.4231.00
58_E61_A1.3331.00
7_T10_S1.2871.00
39_E43_K1.2801.00
35_G39_E1.2651.00
60_E64_A1.2301.00
56_K63_L1.2171.00
20_V24_L1.1951.00
16_A20_V1.1871.00
54_R57_E1.1381.00
5_P9_A1.1131.00
7_T11_Q1.1081.00
51_E55_L1.1051.00
10_S13_F1.0891.00
44_R48_D1.0881.00
18_T21_V1.0681.00
61_A64_A1.0451.00
36_G40_E1.0421.00
53_E56_K1.0091.00
2_Q5_P1.0021.00
67_E71_A0.9751.00
72_D75_A0.9691.00
25_L29_V0.9481.00
64_A67_E0.9371.00
47_G51_E0.9361.00
50_A54_R0.9091.00
9_A13_F0.9011.00
26_L30_A0.9001.00
68_K71_A0.8831.00
69_A72_D0.8791.00
3_L8_F0.8481.00
65_A69_A0.8451.00
30_A34_I0.8371.00
36_G43_K0.8141.00
50_A53_E0.8021.00
11_Q15_L0.7961.00
63_L66_Y0.7911.00
66_Y70_L0.7841.00
55_L58_E0.7821.00
49_L56_K0.7791.00
24_L27_S0.7711.00
51_E58_E0.7631.00
15_L18_T0.7581.00
52_A59_A0.7581.00
24_L29_V0.7371.00
62_A66_Y0.7371.00
8_F37_I0.7241.00
71_A74_R0.7221.00
19_F22_L0.7161.00
56_K66_Y0.6861.00
30_A33_R0.6851.00
47_G50_A0.6851.00
15_L33_R0.6680.99
53_E60_E0.6670.99
71_A75_A0.6640.99
66_Y69_A0.6300.99
58_E62_A0.6280.99
5_P8_F0.6160.99
43_K46_A0.6110.99
61_A68_K0.6030.99
53_E69_A0.5970.99
62_A65_A0.5930.99
40_E47_G0.5920.99
31_L34_I0.5800.99
49_L52_A0.5710.98
8_F18_T0.5640.98
5_P10_S0.5640.98
35_G42_R0.5570.98
65_A68_K0.5490.98
12_L19_F0.5490.98
9_A12_L0.5440.98
69_A73_A0.5410.98
40_E43_K0.5410.98
47_G55_L0.5400.98
33_R36_G0.5390.98
15_L23_Y0.5370.98
26_L35_G0.5360.98
33_R37_I0.5320.97
52_A56_K0.5310.97
26_L29_V0.5300.97
11_Q30_A0.5260.97
4_D9_A0.5250.97
11_Q31_L0.5160.97
12_L21_V0.5150.97
17_I20_V0.5140.97
56_K69_A0.5110.97
70_L73_A0.5110.97
10_S19_F0.5090.97
23_Y26_L0.5080.97
22_L30_A0.5000.96
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1b9uA 1 0.3953 52.8 0.814 Contact Map
2khkA 1 0.593 24.8 0.845 Contact Map
2clyA 1 0.6047 7.8 0.876 Contact Map
2rddB 1 0.4302 7.2 0.879 Contact Map
4gc0A 1 0.5465 2.2 0.906 Contact Map
3qnqA 2 0.5233 2.1 0.907 Contact Map
1fx0A 1 0.7907 1.8 0.91 Contact Map
4hfiA 3 0.314 1.7 0.912 Contact Map
3zilA 1 0.7209 1.7 0.912 Contact Map
1vryA 1 0.407 1.6 0.913 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0046 seconds.