TauE - PFAM28P - GREMLIN Contacts

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TauE - Sulfite exporter TauE/SafE

PFAM:	PF01925	Sequences: LLLAGFLAGFLNGLAGVGGGLLTVPLLLLLLPPAVAVGTSLVAVIFTSLSGALAHRRRGNVDWRLLLPLALGSLPGALLGALLLLLLPGAVLKLLFGVLLLLAALLMLLRPRLSRGRGSRRRPSRLLLLLLGFLIGFLSGLFGIGGGFLLVPALVLLLGLPLKRAVGTSLAIILVTSLAGLLGFALLGLVDWPLALLLAVGSLLGALLGARLARRLPARLLRRLFAVVLLLVGLKL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	236 (234)
Sequences:	92132 (61877)
Seq/√Len:	4045.0
META:	0.807

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
219_R	223_R	3.346	1.00
220_L	223_R	3.266	1.00
217_P	220_L	2.712	1.00
76_G	133_F	2.698	1.00
62_D	65_L	2.676	1.00
10_F	212_L	2.604	1.00
83_L	137_F	2.541	1.00
62_D	164_R	2.501	1.00
4_A	26_L	2.372	1.00
66_L	171_A	2.352	1.00
46_F	199_A	2.296	1.00
207_L	211_R	2.202	1.00
161_P	164_R	2.176	1.00
64_R	67_L	2.156	1.00
105_L	109_L	2.143	1.00
56_R	63_W	2.134	1.00
63_W	67_L	2.114	1.00
191_D	194_L	2.054	1.00
211_R	215_R	2.029	1.00
32_P	35_V	1.995	1.00
64_R	68_P	1.868	1.00
104_A	233_G	1.857	1.00
104_A	226_A	1.837	1.00
72_G	129_L	1.808	1.00
53_L	56_R	1.800	1.00
82_L	86_L	1.790	1.00
73_S	176_T	1.786	1.00
90_A	93_K	1.782	1.00
70_A	175_V	1.768	1.00
71_L	75_P	1.747	1.00
6_F	205_G	1.742	1.00
227_V	231_L	1.729	1.00
101_L	233_G	1.715	1.00
90_A	94_L	1.705	1.00
193_P	197_L	1.700	1.00
75_P	78_L	1.682	1.00
104_A	230_L	1.667	1.00
97_G	233_G	1.658	1.00
2_L	201_G	1.646	1.00
65_L	160_L	1.646	1.00
102_L	106_L	1.629	1.00
82_L	85_L	1.614	1.00
58_R	214_R	1.606	1.00
50_S	203_L	1.574	1.00
55_H	60_N	1.562	1.00
124_S	127_L	1.549	1.00
88_P	91_V	1.527	1.00
50_S	207_L	1.527	1.00
76_G	80_G	1.518	1.00
89_G	93_K	1.493	1.00
98_V	102_L	1.455	1.00
91_V	94_L	1.454	1.00
78_L	183_G	1.451	1.00
41_L	180_G	1.451	1.00
94_L	98_V	1.439	1.00
211_R	214_R	1.421	1.00
68_P	71_L	1.419	1.00
54_A	210_A	1.416	1.00
200_V	204_L	1.400	1.00
66_L	168_T	1.391	1.00
72_G	75_P	1.390	1.00
28_L	33_P	1.370	1.00
45_I	178_L	1.360	1.00
162_L	218_A	1.355	1.00
204_L	207_L	1.354	1.00
192_W	195_A	1.349	1.00
223_R	227_V	1.347	1.00
72_G	76_G	1.345	1.00
81_A	183_G	1.342	1.00
67_L	70_A	1.331	1.00
123_P	126_L	1.330	1.00
67_L	71_L	1.324	1.00
189_L	193_P	1.323	1.00
182_L	186_L	1.306	1.00
126_L	129_L	1.293	1.00
49_L	53_L	1.269	1.00
105_L	230_L	1.262	1.00
53_L	57_R	1.253	1.00
108_L	226_A	1.248	1.00
126_L	130_L	1.241	1.00
78_L	82_L	1.227	1.00
129_L	132_G	1.202	1.00
54_A	58_R	1.201	1.00
49_L	174_L	1.197	1.00
52_A	171_A	1.188	1.00
120_R	123_P	1.181	1.00
51_G	170_L	1.169	1.00
68_P	72_G	1.145	1.00
184_F	189_L	1.138	1.00
46_F	49_L	1.132	1.00
8_A	23_T	1.127	1.00
39_T	195_A	1.122	1.00
201_G	205_G	1.119	1.00
83_L	86_L	1.117	1.00
205_G	208_L	1.116	1.00
5_G	201_G	1.114	1.00
218_A	222_R	1.112	1.00
193_P	196_L	1.107	1.00
91_V	95_L	1.106	1.00
208_L	211_R	1.097	1.00
84_L	184_F	1.097	1.00
77_A	180_G	1.096	1.00
196_L	200_V	1.092	1.00
220_L	224_L	1.089	1.00
35_V	38_G	1.082	1.00
94_L	97_G	1.082	1.00
166_V	169_S	1.080	1.00
219_R	222_R	1.075	1.00
109_L	112_R	1.070	1.00
182_L	185_A	1.066	1.00
135_I	149_L	1.064	1.00
106_L	110_R	1.062	1.00
178_L	182_L	1.061	1.00
185_A	192_W	1.057	1.00
144_I	148_F	1.055	1.00
205_G	209_G	1.054	1.00
24_V	36_A	1.054	1.00
52_A	56_R	1.049	1.00
74_L	179_A	1.043	1.00
97_G	101_L	1.041	1.00
42_V	195_A	1.040	1.00
35_V	191_D	1.031	1.00
60_N	214_R	1.020	1.00
33_P	93_K	1.018	1.00
127_L	130_L	1.018	1.00
194_L	197_L	1.016	1.00
151_V	165_A	1.013	1.00
206_A	210_A	1.007	1.00
6_F	208_L	1.006	1.00
54_A	57_R	1.005	1.00
203_L	207_L	1.004	1.00
230_L	234_L	0.991	1.00
123_P	127_L	0.990	1.00
15_A	224_L	0.987	1.00
147_G	152_P	0.983	1.00
8_A	22_L	0.981	1.00
87_L	141_L	0.978	1.00
160_L	164_R	0.975	1.00
103_A	106_L	0.967	1.00
216_L	220_L	0.963	1.00
197_L	200_V	0.963	1.00
122_R	125_R	0.960	1.00
192_W	196_L	0.957	1.00
75_P	79_L	0.956	1.00
122_R	126_L	0.942	1.00
68_P	129_L	0.942	1.00
125_R	129_L	0.941	1.00
51_G	206_A	0.940	1.00
14_L	216_L	0.939	1.00
68_P	125_R	0.934	1.00
164_R	167_G	0.929	1.00
77_A	81_A	0.928	1.00
163_K	213_A	0.925	1.00
5_G	23_T	0.924	1.00
101_L	105_L	0.918	1.00
99_L	142_F	0.914	1.00
6_F	204_L	0.911	1.00
55_H	167_G	0.910	1.00
61_V	171_A	0.910	1.00
121_R	124_S	0.907	1.00
130_L	133_F	0.903	1.00
161_P	218_A	0.895	1.00
60_N	163_K	0.890	1.00
12_N	20_G	0.888	1.00
5_G	198_L	0.887	1.00
153_A	157_L	0.885	1.00
210_A	214_R	0.884	1.00
121_R	125_R	0.883	1.00
131_L	153_A	0.882	1.00
135_I	150_L	0.881	1.00
35_V	39_T	0.880	1.00
63_W	66_L	0.874	1.00
150_L	154_L	0.873	1.00
155_V	162_L	0.873	1.00
231_L	235_K	0.865	1.00
31_L	35_V	0.862	1.00
42_V	181_L	0.861	1.00
79_L	133_F	0.861	1.00
106_L	109_L	0.854	1.00
79_L	82_L	0.854	1.00
54_A	211_R	0.853	1.00
119_S	122_R	0.845	1.00
183_G	187_L	0.845	1.00
102_L	105_L	0.836	1.00
71_L	74_L	0.835	1.00
73_S	172_I	0.834	1.00
81_A	85_L	0.828	1.00
133_F	137_F	0.827	1.00
173_I	176_T	0.823	1.00
81_A	184_F	0.823	1.00
55_H	210_A	0.821	1.00
80_G	137_F	0.819	1.00
10_F	208_L	0.816	1.00
120_R	124_S	0.810	1.00
149_L	152_P	0.809	1.00
110_R	113_L	0.809	1.00
150_L	172_I	0.806	1.00
183_G	186_L	0.805	1.00
60_N	167_G	0.804	1.00
85_L	189_L	0.800	1.00
204_L	208_L	0.799	1.00
3_L	7_L	0.797	1.00
146_G	150_L	0.793	1.00
150_L	153_A	0.785	1.00
15_A	228_V	0.784	1.00
174_L	178_L	0.783	1.00
45_I	181_L	0.782	1.00
100_L	229_L	0.781	1.00
101_L	234_L	0.780	1.00
109_L	113_L	0.763	1.00
114_S	117_R	0.757	1.00
169_S	173_I	0.754	1.00
5_G	9_G	0.751	1.00
23_T	40_S	0.751	1.00
177_S	180_G	0.743	1.00
37_V	184_F	0.742	1.00
56_R	59_G	0.740	1.00
130_L	134_L	0.739	1.00
25_P	28_L	0.733	1.00
52_A	174_L	0.730	1.00
56_R	61_V	0.726	1.00
76_G	79_L	0.725	1.00
224_L	228_V	0.724	1.00
212_L	215_R	0.718	1.00
54_A	207_L	0.705	1.00
24_V	28_L	0.705	1.00
33_P	37_V	0.703	1.00
47_T	202_S	0.703	1.00
79_L	83_L	0.702	1.00
125_R	128_L	0.697	1.00
50_S	54_A	0.697	1.00
196_L	199_A	0.695	1.00
77_A	179_A	0.695	1.00
223_R	226_A	0.694	1.00
45_I	49_L	0.690	1.00
69_L	154_L	0.690	1.00
72_G	132_G	0.689	1.00
225_F	229_L	0.689	1.00
50_S	53_L	0.686	1.00
152_P	156_L	0.685	1.00
12_N	19_G	0.682	1.00
2_L	6_F	0.681	1.00
181_L	185_A	0.681	1.00
55_H	213_A	0.679	1.00
29_L	235_K	0.676	1.00
138_L	144_I	0.673	1.00
9_G	13_G	0.668	1.00
24_V	40_S	0.667	1.00
110_R	222_R	0.665	1.00
199_A	203_L	0.662	1.00
23_T	27_L	0.662	1.00
175_V	178_L	0.657	1.00
119_S	124_S	0.655	1.00
163_K	218_A	0.651	1.00
58_R	211_R	0.650	1.00
6_F	9_G	0.647	1.00
224_L	227_V	0.646	1.00
79_L	137_F	0.644	1.00
60_N	164_R	0.643	1.00
121_R	127_L	0.642	1.00
107_M	226_A	0.640	1.00
43_A	198_L	0.640	1.00
104_A	108_L	0.640	1.00
151_V	166_V	0.639	1.00
200_V	203_L	0.638	1.00
82_L	183_G	0.637	1.00
69_L	172_I	0.630	1.00
61_V	168_T	0.629	1.00
101_L	230_L	0.629	1.00
155_V	165_A	0.629	1.00
128_L	131_L	0.627	1.00
12_N	17_V	0.627	1.00
10_F	205_G	0.626	1.00
139_S	176_T	0.626	1.00
108_L	223_R	0.625	1.00
44_V	177_S	0.623	1.00
173_I	177_S	0.623	1.00
31_L	194_L	0.622	1.00
40_S	44_V	0.618	1.00
74_L	78_L	0.608	1.00
217_P	223_R	0.608	1.00
131_L	134_L	0.605	1.00
73_S	150_L	0.605	1.00
145_G	149_L	0.604	1.00
85_L	187_L	0.603	1.00
62_D	168_T	0.603	1.00
23_T	198_L	0.602	1.00
104_A	229_L	0.598	1.00
28_L	36_A	0.598	1.00
118_G	121_R	0.594	1.00
222_R	226_A	0.593	1.00
120_R	125_R	0.593	1.00
231_L	234_L	0.590	1.00
65_L	68_P	0.590	1.00
34_A	84_L	0.590	1.00
26_L	30_L	0.588	1.00
13_G	51_G	0.587	1.00
127_L	131_L	0.585	1.00
6_F	10_F	0.585	1.00
135_I	146_G	0.583	1.00
27_L	198_L	0.582	1.00
208_L	212_L	0.578	1.00
28_L	93_K	0.577	1.00
188_G	191_D	0.574	1.00
95_L	98_V	0.570	1.00
34_A	89_G	0.570	1.00
104_A	107_M	0.566	1.00
144_I	147_G	0.564	1.00
146_G	149_L	0.563	1.00
70_A	172_I	0.561	1.00
6_F	201_G	0.559	1.00
33_P	92_L	0.559	1.00
43_A	202_S	0.557	1.00
162_L	166_V	0.556	1.00
78_L	186_L	0.556	1.00
165_A	169_S	0.555	1.00
55_H	166_V	0.551	1.00
62_D	67_L	0.551	1.00
187_L	191_D	0.551	1.00
148_F	152_P	0.550	1.00
175_V	179_A	0.550	1.00
216_L	221_L	0.548	1.00
103_A	107_M	0.547	1.00
7_L	10_F	0.543	1.00
33_P	89_G	0.543	1.00
148_F	151_V	0.538	1.00
179_A	182_L	0.537	1.00
197_L	201_G	0.533	1.00
139_S	145_G	0.533	1.00
13_G	210_A	0.532	1.00
76_G	137_F	0.530	1.00
12_N	15_A	0.529	1.00
8_A	26_L	0.528	1.00
66_L	71_L	0.528	1.00
171_A	175_V	0.527	1.00
128_L	132_G	0.525	1.00
162_L	225_F	0.523	1.00
49_L	52_A	0.520	1.00
122_R	127_L	0.519	1.00
34_A	37_V	0.517	1.00
33_P	96_F	0.516	1.00
129_L	133_F	0.514	1.00
68_P	128_L	0.514	1.00
95_L	99_L	0.509	1.00
78_L	81_A	0.509	1.00
126_L	132_G	0.506	1.00
232_V	235_K	0.505	1.00
8_A	12_N	0.504	1.00
3_L	6_F	0.503	1.00
152_P	155_V	0.501	1.00
56_R	60_N	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3o7qA	1	0.8602	37.1	0.911	Contact Map
3llqA	3	0.7373	32.3	0.914	Contact Map
1pw4A	1	0.8517	32.3	0.914	Contact Map
2f2bA	4	0.75	27	0.917	Contact Map
2gfpA	2	0.839	22	0.921	Contact Map
3l1lA	2	0.4831	19	0.923	Contact Map
4tphA	2	0.3729	9.5	0.933	Contact Map
4j05A	3	0.7797	9.3	0.933	Contact Map
2a65A	2	0.4746	9.2	0.933	Contact Map
4ldsA	2	0.3517	9.2	0.933	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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