DDE_Tnp_Tn3 - PFAM28P - GREMLIN Contacts

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DDE_Tnp_Tn3 - Tn3 transposase DDE domain

PFAM:	PF01526	Sequences: DLLLEVDAWTGFTDAFTHLSGREAKDRDDRRRLLAALLAYGTNLGLKRMARASPGLSYDQLSWVNRWYIREETLRAANARIVNAQARLPLAKIWGDGTTASSDGQKFEVWVQNLLAEYHPRYFGKGRGVTAYTHVSDQYIPFYSQVISCTEREAAYVLDGLLRNETDLQPDEHYTDTHGQSEVVFALCHLLGFRFAPRIRDLKDQRLYRPDKGADYPHLDPLLTSGTINWDLIEEHWDDMLRLAASLKLGTVTASTILRRLGSYSRQNPLYKALRELGRIIKTIFLLRYLDDEELRRRIQAGLNKGEARHALARAIFFGNRGEIRDRTREEQEIRASCLRLVANAIILWNTLYLQRALEQLRAEGEEVTDEDLAHLSPLGWEHINLYGRY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	390 (389)
Sequences:	4000 (2414)
Seq/√Len:	122.4
META:	0.836

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
15_A	80_R	4.239	1.00
194_R	288_R	3.861	1.00
70_R	73_T	3.779	1.00
41_G	342_V	3.776	1.00
101_S	306_G	3.658	1.00
7_D	13_T	3.649	1.00
7_D	30_R	3.642	1.00
285_F	299_I	3.472	1.00
175_T	179_G	3.399	1.00
83_N	167_D	3.254	1.00
102_S	173_H	2.910	1.00
205_Q	282_K	2.747	1.00
84_A	348_L	2.709	1.00
231_D	235_E	2.705	1.00
236_H	239_D	2.694	1.00
162_L	247_L	2.693	1.00
240_M	274_L	2.629	1.00
196_A	295_L	2.585	1.00
316_I	346_I	2.572	1.00
289_Y	299_I	2.543	1.00
189_H	281_I	2.515	1.00
3_L	345_A	2.471	1.00
81_I	345_A	2.465	1.00
100_A	173_H	2.444	1.00
358_L	373_L	2.429	1.00
172_E	298_R	2.399	1.00
2_L	384_I	2.387	1.00
78_N	344_N	2.304	1.00
187_L	244_A	2.276	1.00
152_R	178_H	2.249	1.00
355_Q	359_E	2.227	1.00
240_M	277_L	2.219	1.00
106_K	124_G	2.203	1.00
198_R	300_Q	2.145	1.00
350_N	383_H	2.115	1.00
276_E	279_R	2.106	1.00
7_D	10_T	2.086	1.00
99_T	174_Y	2.081	1.00
210_P	230_W	2.071	1.00
189_H	277_L	2.070	1.00
9_W	352_L	2.051	1.00
243_L	257_I	2.038	1.00
134_H	160_G	2.024	1.00
311_A	381_W	1.994	1.00
15_A	76_A	1.992	1.00
295_L	299_I	1.977	1.00
285_F	289_Y	1.953	1.00
177_T	200_R	1.931	1.00
14_D	80_R	1.906	1.00
201_D	204_D	1.900	1.00
240_M	244_A	1.877	1.00
129_V	146_V	1.874	1.00
174_Y	302_G	1.855	1.00
288_R	292_D	1.840	1.00
46_L	61_L	1.839	1.00
90_L	351_T	1.836	1.00
190_L	244_A	1.826	1.00
154_A	184_V	1.825	1.00
159_D	255_S	1.803	1.00
316_I	343_A	1.789	1.00
182_E	208_Y	1.786	1.00
97_G	137_D	1.738	1.00
207_L	283_T	1.733	1.00
85_Q	140_I	1.728	1.00
202_L	286_L	1.715	1.00
180_Q	282_K	1.695	1.00
228_I	276_E	1.682	1.00
142_F	170_P	1.668	1.00
145_Q	156_Y	1.659	1.00
309_R	313_A	1.657	1.00
308_A	311_A	1.648	1.00
346_I	384_I	1.645	1.00
11_G	14_D	1.621	1.00
36_A	69_I	1.609	1.00
190_L	240_M	1.603	1.00
243_L	274_L	1.586	1.00
360_Q	364_E	1.586	1.00
235_E	269_P	1.580	1.00
134_H	142_F	1.549	1.00
6_V	9_W	1.536	1.00
6_V	10_T	1.532	1.00
143_Y	160_G	1.530	1.00
186_A	281_I	1.529	1.00
157_V	175_T	1.519	1.00
13_T	34_L	1.466	1.00
182_E	279_R	1.465	1.00
209_R	216_Y	1.460	1.00
77_A	341_L	1.453	1.00
182_E	282_K	1.452	1.00
315_A	386_L	1.445	1.00
275_R	279_R	1.435	1.00
354_L	380_G	1.422	1.00
109_V	116_A	1.412	1.00
362_R	370_D	1.411	1.00
105_Q	314_R	1.398	1.00
232_L	276_E	1.393	1.00
236_H	270_L	1.384	1.00
210_P	280_I	1.378	1.00
102_S	132_Y	1.374	1.00
131_A	336_A	1.373	1.00
369_T	372_D	1.363	1.00
47_K	58_Y	1.356	1.00
230_W	234_E	1.347	1.00
157_V	173_H	1.344	1.00
82_V	140_I	1.333	1.00
373_L	376_L	1.332	1.00
129_V	324_I	1.330	1.00
243_L	270_L	1.327	1.00
285_F	295_L	1.323	1.00
219_L	223_L	1.317	1.00
58_Y	62_S	1.312	1.00
132_Y	160_G	1.312	1.00
102_S	179_G	1.294	1.00
318_F	390_Y	1.277	1.00
371_E	374_A	1.270	1.00
177_T	201_D	1.269	1.00
349_W	353_Y	1.264	1.00
229_N	272_K	1.253	1.00
88_L	351_T	1.243	0.99
10_T	13_T	1.238	0.99
84_A	87_R	1.232	0.99
228_I	279_R	1.220	0.99
12_F	37_L	1.219	0.99
293_E	297_R	1.215	0.99
144_S	336_A	1.215	0.99
316_I	342_V	1.211	0.99
209_R	220_D	1.210	0.99
231_D	234_E	1.208	0.99
215_D	220_D	1.207	0.99
63_W	67_W	1.193	0.99
43_N	317_F	1.188	0.99
7_D	11_G	1.186	0.99
148_S	151_E	1.186	0.99
2_L	346_I	1.185	0.99
212_K	227_T	1.185	0.99
218_H	221_P	1.177	0.99
88_L	355_Q	1.175	0.99
180_Q	199_I	1.172	0.99
236_H	269_P	1.171	0.99
233_I	276_E	1.169	0.99
232_L	272_K	1.156	0.99
159_D	163_R	1.150	0.99
151_E	156_Y	1.148	0.99
182_E	205_Q	1.145	0.99
115_L	332_Q	1.141	0.99
229_N	276_E	1.138	0.99
99_T	302_G	1.136	0.99
102_S	175_T	1.135	0.99
122_Y	128_G	1.134	0.99
229_N	232_L	1.134	0.99
326_D	335_R	1.130	0.99
208_Y	228_I	1.125	0.99
372_D	376_L	1.123	0.99
40_Y	65_N	1.117	0.99
207_L	286_L	1.114	0.99
123_F	127_R	1.113	0.99
220_D	223_L	1.111	0.99
131_A	146_V	1.110	0.99
141_P	344_N	1.109	0.99
81_I	348_L	1.108	0.99
32_R	64_V	1.106	0.99
366_E	369_T	1.096	0.99
162_L	254_A	1.075	0.98
228_I	233_I	1.072	0.98
102_S	157_V	1.069	0.98
245_A	249_L	1.063	0.98
211_D	216_Y	1.057	0.98
297_R	300_Q	1.056	0.98
284_I	288_R	1.055	0.98
133_T	141_P	1.047	0.98
152_R	180_Q	1.042	0.98
123_F	128_G	1.040	0.98
320_N	325_R	1.037	0.98
7_D	12_F	1.036	0.98
239_D	270_L	1.034	0.98
92_K	138_Q	1.034	0.98
152_R	155_A	1.033	0.98
16_F	77_A	1.030	0.98
156_Y	255_S	1.030	0.98
158_L	188_C	1.021	0.98
229_N	235_E	1.019	0.98
358_L	362_R	1.016	0.98
314_R	321_R	1.015	0.98
130_T	153_E	1.014	0.98
85_Q	91_A	1.013	0.98
85_Q	344_N	1.010	0.98
161_L	193_F	1.010	0.98
2_L	345_A	1.010	0.98
85_Q	88_L	1.006	0.98
79_A	83_N	0.999	0.98
359_E	363_A	0.996	0.97
25_K	29_D	0.995	0.97
253_T	256_T	0.995	0.97
236_H	273_A	0.993	0.97
7_D	14_D	0.985	0.97
205_Q	286_L	0.984	0.97
31_R	56_L	0.983	0.97
346_I	386_L	0.983	0.97
4_L	8_A	0.981	0.97
172_E	196_A	0.974	0.97
159_D	253_T	0.971	0.97
356_R	359_E	0.971	0.97
211_D	215_D	0.968	0.97
139_Y	379_L	0.968	0.97
187_L	258_L	0.962	0.97
9_W	348_L	0.959	0.97
175_T	303_L	0.957	0.97
209_R	215_D	0.957	0.97
183_V	271_Y	0.954	0.97
74_L	338_C	0.952	0.97
98_T	171_D	0.951	0.97
83_N	166_T	0.950	0.97
369_T	376_L	0.945	0.97
104_G	130_T	0.945	0.97
76_A	80_R	0.941	0.96
83_N	164_N	0.937	0.96
42_T	342_V	0.936	0.96
317_F	335_R	0.936	0.96
159_D	254_A	0.934	0.96
78_N	340_R	0.934	0.96
219_L	222_L	0.933	0.96
96_D	137_D	0.932	0.96
44_L	48_R	0.924	0.96
37_L	342_V	0.920	0.96
223_L	226_G	0.919	0.96
328_T	331_E	0.916	0.96
32_R	60_Q	0.914	0.96
209_R	213_G	0.912	0.96
198_R	303_L	0.911	0.96
277_L	281_I	0.909	0.96
152_R	181_S	0.908	0.96
57_S	60_Q	0.907	0.96
156_Y	161_L	0.905	0.96
95_G	137_D	0.903	0.95
140_I	168_L	0.901	0.95
180_Q	205_Q	0.901	0.95
324_I	332_Q	0.899	0.95
183_V	258_L	0.898	0.95
18_H	67_W	0.896	0.95
117_E	150_T	0.896	0.95
219_L	224_T	0.895	0.95
210_P	214_A	0.894	0.95
145_Q	163_R	0.894	0.95
319_G	387_Y	0.890	0.95
247_L	254_A	0.890	0.95
2_L	8_A	0.880	0.95
131_A	324_I	0.879	0.95
232_L	269_P	0.878	0.95
107_F	314_R	0.878	0.95
147_I	151_E	0.876	0.95
33_L	37_L	0.875	0.95
211_D	214_A	0.869	0.94
315_A	381_W	0.866	0.94
142_F	160_G	0.865	0.94
99_T	172_E	0.863	0.94
186_A	240_M	0.859	0.94
177_T	180_Q	0.858	0.94
43_N	46_L	0.854	0.94
134_H	143_Y	0.854	0.94
6_V	12_F	0.852	0.94
59_D	62_S	0.851	0.94
164_N	168_L	0.850	0.94
130_T	149_C	0.848	0.94
147_I	156_Y	0.843	0.94
381_W	386_L	0.842	0.93
100_A	142_F	0.840	0.93
80_R	87_R	0.838	0.93
16_F	74_L	0.838	0.93
264_Y	268_N	0.836	0.93
81_I	341_L	0.835	0.93
308_A	381_W	0.834	0.93
361_L	365_G	0.832	0.93
158_L	162_L	0.831	0.93
29_D	68_Y	0.828	0.93
94_W	250_G	0.828	0.93
90_L	93_I	0.825	0.93
220_D	224_T	0.820	0.93
367_E	371_E	0.819	0.93
130_T	178_H	0.817	0.92
82_V	168_L	0.816	0.92
163_R	253_T	0.815	0.92
249_L	254_A	0.811	0.92
158_L	187_L	0.810	0.92
369_T	373_L	0.809	0.92
3_L	34_L	0.808	0.92
269_P	272_K	0.805	0.92
159_D	164_N	0.804	0.92
154_A	181_S	0.804	0.92
342_V	345_A	0.802	0.92
71_E	333_E	0.800	0.92
221_P	224_T	0.791	0.91
196_A	299_I	0.788	0.91
73_T	148_S	0.784	0.91
106_K	314_R	0.782	0.91
261_L	268_N	0.778	0.90
132_Y	157_V	0.776	0.90
370_D	376_L	0.776	0.90
329_R	333_E	0.774	0.90
312_L	381_W	0.773	0.90
336_A	339_L	0.771	0.90
324_I	336_A	0.770	0.90
6_V	348_L	0.770	0.90
340_R	343_A	0.770	0.90
158_L	193_F	0.769	0.90
140_I	162_L	0.767	0.90
113_N	327_R	0.766	0.90
336_A	340_R	0.763	0.90
368_V	373_L	0.761	0.89
274_L	296_R	0.759	0.89
106_K	130_T	0.758	0.89
256_T	259_R	0.756	0.89
233_I	273_A	0.755	0.89
26_D	29_D	0.750	0.89
90_L	358_L	0.750	0.89
82_V	166_T	0.750	0.89
352_L	356_R	0.748	0.89
362_R	365_G	0.748	0.89
281_I	284_I	0.745	0.88
21_G	24_A	0.743	0.88
240_M	273_A	0.739	0.88
60_Q	64_V	0.739	0.88
16_F	68_Y	0.738	0.88
363_A	369_T	0.738	0.88
1_D	5_E	0.736	0.88
174_Y	285_F	0.735	0.88
81_I	85_Q	0.735	0.88
132_Y	147_I	0.732	0.88
232_L	236_H	0.731	0.88
351_T	355_Q	0.730	0.87
253_T	264_Y	0.729	0.87
280_I	284_I	0.727	0.87
119_H	122_Y	0.725	0.87
359_E	362_R	0.721	0.87
21_G	25_K	0.721	0.87
154_A	160_G	0.720	0.87
161_L	173_H	0.719	0.87
153_E	178_H	0.719	0.87
129_V	147_I	0.719	0.87
346_I	350_N	0.718	0.87
61_L	69_I	0.717	0.87
182_E	275_R	0.717	0.87
117_E	149_C	0.716	0.86
318_F	322_G	0.715	0.86
376_L	385_N	0.713	0.86
39_A	49_M	0.712	0.86
174_Y	303_L	0.711	0.86
139_Y	305_K	0.711	0.86
191_L	248_K	0.710	0.86
134_H	157_V	0.708	0.86
87_R	167_D	0.706	0.86
6_V	352_L	0.705	0.86
371_E	375_H	0.704	0.86
179_G	303_L	0.702	0.85
4_L	7_D	0.702	0.85
101_S	302_G	0.700	0.85
194_R	295_L	0.698	0.85
124_G	274_L	0.697	0.85
107_F	313_A	0.696	0.85
230_W	280_I	0.696	0.85
35_A	61_L	0.694	0.85
361_L	364_E	0.693	0.85
318_F	387_Y	0.693	0.85
208_Y	226_G	0.693	0.85
6_V	345_A	0.690	0.84
369_T	375_H	0.689	0.84
303_L	306_G	0.686	0.84
174_Y	196_A	0.683	0.84
36_A	61_L	0.678	0.83
213_G	227_T	0.675	0.83
50_A	57_S	0.674	0.83
281_I	285_F	0.672	0.83
263_S	267_Q	0.672	0.83
245_A	248_K	0.672	0.83
216_Y	223_L	0.670	0.83
65_N	69_I	0.669	0.83
4_L	34_L	0.668	0.82
230_W	233_I	0.667	0.82
370_D	374_A	0.666	0.82
308_A	312_L	0.665	0.82
162_L	193_F	0.664	0.82
175_T	195_F	0.657	0.81
106_K	152_R	0.656	0.81
286_L	290_L	0.656	0.81
115_L	148_S	0.655	0.81
151_E	154_A	0.655	0.81
259_R	265_S	0.655	0.81
92_K	95_G	0.652	0.81
42_T	318_F	0.652	0.81
242_R	246_S	0.651	0.81
4_L	31_R	0.651	0.81
115_L	329_R	0.649	0.81
282_K	324_I	0.647	0.80
44_L	387_Y	0.647	0.80
132_Y	179_G	0.647	0.80
80_R	83_N	0.647	0.80
106_K	153_E	0.646	0.80
5_E	9_W	0.645	0.80
237_W	241_L	0.642	0.80
36_A	64_V	0.642	0.80
136_S	140_I	0.641	0.80
264_Y	274_L	0.640	0.80
190_L	248_K	0.640	0.80
353_Y	356_R	0.639	0.80
40_Y	338_C	0.639	0.80
283_T	286_L	0.638	0.79
120_P	125_K	0.637	0.79
252_V	256_T	0.636	0.79
360_Q	369_T	0.634	0.79
306_G	310_H	0.633	0.79
206_R	226_G	0.633	0.79
238_D	324_I	0.633	0.79
35_A	56_L	0.632	0.79
262_G	266_R	0.630	0.79
2_L	6_V	0.630	0.79
300_Q	304_N	0.630	0.79
49_M	52_A	0.630	0.79
22_R	39_A	0.629	0.78
106_K	149_C	0.628	0.78
312_L	384_I	0.625	0.78
36_A	65_N	0.623	0.78
367_E	376_L	0.620	0.78
129_V	193_F	0.618	0.77
15_A	19_L	0.617	0.77
12_F	77_A	0.617	0.77
56_L	60_Q	0.617	0.77
86_A	92_K	0.617	0.77
134_H	145_Q	0.616	0.77
187_L	247_L	0.615	0.77
214_A	217_P	0.615	0.77
88_L	348_L	0.613	0.77
369_T	374_A	0.612	0.77
105_Q	133_T	0.612	0.77
161_L	170_P	0.611	0.76
212_K	216_Y	0.611	0.76
191_L	244_A	0.611	0.76
106_K	120_P	0.611	0.76
362_R	373_L	0.609	0.76
184_V	258_L	0.609	0.76
228_I	280_I	0.608	0.76
157_V	161_L	0.608	0.76
314_R	317_F	0.607	0.76
150_T	181_S	0.606	0.76
108_E	126_G	0.606	0.76
19_L	70_R	0.605	0.76
46_L	58_Y	0.605	0.76
258_L	271_Y	0.604	0.76
53_S	56_L	0.603	0.76
131_A	144_S	0.601	0.75
13_T	33_L	0.600	0.75
37_L	338_C	0.597	0.75
83_N	86_A	0.597	0.75
259_R	387_Y	0.596	0.75
322_G	339_L	0.596	0.75
23_E	27_R	0.595	0.75
357_A	360_Q	0.594	0.74
317_F	339_L	0.594	0.74
284_I	287_L	0.593	0.74
351_T	378_P	0.590	0.74
260_R	271_Y	0.589	0.74
155_A	184_V	0.589	0.74
16_F	341_L	0.588	0.74
195_F	282_K	0.588	0.74
89_P	355_Q	0.585	0.73
380_G	386_L	0.584	0.73
246_S	322_G	0.584	0.73
102_S	254_A	0.584	0.73
60_Q	63_W	0.583	0.73
109_V	128_G	0.583	0.73
329_R	332_Q	0.583	0.73
76_A	79_A	0.582	0.73
3_L	342_V	0.581	0.73
364_E	368_V	0.580	0.73
85_Q	351_T	0.580	0.73
82_V	344_N	0.579	0.73
14_D	23_E	0.578	0.72
94_W	378_P	0.577	0.72
267_Q	275_R	0.577	0.72
186_A	274_L	0.577	0.72
210_P	282_K	0.576	0.72
17_T	24_A	0.575	0.72
361_L	366_E	0.575	0.72
154_A	254_A	0.573	0.72
111_V	327_R	0.572	0.72
212_K	215_D	0.571	0.72
216_Y	220_D	0.570	0.71
264_Y	267_Q	0.568	0.71
334_I	337_S	0.568	0.71
199_I	205_Q	0.567	0.71
124_G	150_T	0.563	0.70
277_L	280_I	0.562	0.70
208_Y	279_R	0.561	0.70
79_A	214_A	0.561	0.70
136_S	168_L	0.560	0.70
151_E	259_R	0.560	0.70
211_D	217_P	0.560	0.70
357_A	368_V	0.559	0.70
138_Q	168_L	0.559	0.70
333_E	337_S	0.559	0.70
213_G	220_D	0.558	0.70
348_L	352_L	0.556	0.70
107_F	203_K	0.556	0.70
313_A	317_F	0.556	0.70
265_S	271_Y	0.555	0.69
365_G	368_V	0.555	0.69
176_D	307_E	0.553	0.69
383_H	390_Y	0.552	0.69
259_R	356_R	0.552	0.69
45_G	48_R	0.550	0.69
32_R	56_L	0.550	0.69
37_L	74_L	0.549	0.69
307_E	310_H	0.549	0.69
74_L	341_L	0.548	0.68
50_A	58_Y	0.548	0.68
238_D	245_A	0.548	0.68
266_R	332_Q	0.547	0.68
1_D	29_D	0.545	0.68
343_A	347_I	0.544	0.68
317_F	322_G	0.544	0.68
144_S	164_N	0.544	0.68
232_L	235_E	0.543	0.68
28_D	31_R	0.542	0.68
29_D	33_L	0.540	0.67
387_Y	390_Y	0.540	0.67
199_I	305_K	0.538	0.67
183_V	274_L	0.537	0.67
309_R	343_A	0.537	0.67
343_A	348_L	0.537	0.67
196_A	285_F	0.537	0.67
326_D	332_Q	0.536	0.67
81_I	211_D	0.536	0.67
11_G	30_R	0.534	0.66
384_I	390_Y	0.533	0.66
368_V	372_D	0.533	0.66
191_L	285_F	0.533	0.66
178_H	269_P	0.531	0.66
100_A	136_S	0.530	0.66
151_E	155_A	0.530	0.66
298_R	302_G	0.530	0.66
86_A	138_Q	0.529	0.66
309_R	347_I	0.528	0.66
99_T	298_R	0.528	0.66
368_V	375_H	0.527	0.65
365_G	376_L	0.527	0.65
149_C	153_E	0.525	0.65
358_L	376_L	0.525	0.65
183_V	262_G	0.525	0.65
356_R	360_Q	0.523	0.65
263_S	280_I	0.523	0.65
112_Q	327_R	0.523	0.65
42_T	319_G	0.520	0.64
177_T	199_I	0.520	0.64
195_F	210_P	0.519	0.64
361_L	368_V	0.518	0.64
317_F	324_I	0.517	0.64
185_F	285_F	0.516	0.64
380_G	383_H	0.516	0.64
141_P	347_I	0.516	0.64
122_Y	149_C	0.515	0.64
16_F	33_L	0.514	0.64
378_P	384_I	0.513	0.63
316_I	321_R	0.513	0.63
218_H	222_L	0.513	0.63
178_H	201_D	0.513	0.63
209_R	214_A	0.511	0.63
158_L	247_L	0.511	0.63
127_R	274_L	0.510	0.63
177_T	303_L	0.510	0.63
90_L	312_L	0.509	0.63
86_A	140_I	0.508	0.63
362_R	367_E	0.507	0.63
113_N	127_R	0.507	0.63
234_E	238_D	0.507	0.63
143_Y	164_N	0.506	0.62
29_D	64_V	0.506	0.62
56_L	254_A	0.506	0.62
18_H	22_R	0.505	0.62
90_L	332_Q	0.505	0.62
83_N	256_T	0.504	0.62
364_E	373_L	0.503	0.62
202_L	290_L	0.502	0.62
89_P	359_E	0.502	0.62
175_T	180_Q	0.500	0.61
260_R	265_S	0.500	0.61
75_R	78_N	0.500	0.61

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1elkA	1	0.3667	72.8	0.968	Contact Map
3ldzA	1	0.3205	28.7	0.976	Contact Map
3rruA	1	0.3385	27.1	0.976	Contact Map
3g2sA	1	0.3615	25.1	0.976	Contact Map
1mhqA	1	0.3615	18.8	0.978	Contact Map
3ga2A	1	0.5359	11.6	0.98	Contact Map
1x5bA	1	0.3897	11.3	0.98	Contact Map
1dvpA	2	0.3949	11	0.98	Contact Map
4cr2J	1	0.2205	10.3	0.98	Contact Map
1juqA	3	0.3718	9.7	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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