GREMLIN Database
RS13 - 30S ribosomal protein S13
UniProt: Q9V2W4 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 171 (145)
Sequences: 384 (245)
Seq/√Len: 20.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
133_K143_G4.0531.00
58_A67_A4.0471.00
117_M124_K3.4791.00
117_M122_S3.2831.00
30_V54_V3.2191.00
89_R92_D2.8440.99
125_G128_H2.4940.97
64_E67_A2.4660.97
31_E46_R2.4360.97
48_V74_A2.3490.96
19_I68_I2.2490.95
44_V78_F2.0860.93
46_R50_D2.0750.93
121_R129_E1.9520.90
33_A60_M1.9090.89
13_I103_G1.8620.88
14_Q65_D1.8190.87
77_S122_S1.7560.85
90_Q98_N1.7480.84
58_A64_E1.7060.83
49_A54_V1.6930.82
113_D128_H1.6930.82
18_R144_R1.6660.81
15_Y78_F1.6200.79
88_N92_D1.5710.77
78_F82_A1.5580.76
113_D117_M1.4820.73
146_E151_V1.4810.73
24_L36_E1.4780.73
49_A86_L1.4630.72
11_E64_E1.4460.71
96_G100_H1.4160.69
30_V49_A1.4060.69
85_W92_D1.3990.68
117_M123_Y1.3890.68
17_V60_M1.3870.68
72_T76_D1.3470.65
31_E45_A1.3470.65
146_E150_G1.3330.64
145_T148_T1.3220.64
36_E71_V1.3120.63
85_W88_N1.3000.62
41_G111_D1.2940.62
38_G107_E1.2710.61
113_D125_G1.2710.61
15_Y44_V1.2710.61
85_W89_R1.2670.60
110_R114_I1.2510.59
116_R124_K1.2350.58
101_I138_R1.2150.57
93_F116_R1.2130.57
115_N118_R1.2030.56
12_D24_L1.1930.56
65_D72_T1.1890.55
28_K32_R1.1860.55
16_F20_G1.1820.55
123_Y141_S1.1800.55
32_R141_S1.1760.54
22_T54_V1.1700.54
79_T84_A1.1670.54
13_I59_T1.1640.54
20_G147_G1.1600.53
16_F140_K1.1440.52
24_L68_I1.1360.52
26_G61_G1.1260.51
36_E94_Y1.1240.51
12_D149_I1.1090.50
63_L106_V1.1050.50
58_A62_G1.0850.49
103_G133_K1.0550.47
29_T58_A1.0520.46
126_I130_R1.0460.46
12_D32_R1.0370.45
115_N129_E1.0110.44
88_N144_R0.9890.42
26_G88_N0.9840.42
69_E145_T0.9800.42
68_I91_N0.9740.41
52_A74_A0.9710.41
55_D58_A0.9700.41
146_E154_E0.9650.41
17_V24_L0.9560.40
109_T120_I0.9520.40
68_I112_Q0.9380.39
24_L30_V0.9320.39
101_I106_V0.9300.39
26_G92_D0.9270.38
38_G145_T0.9170.38
123_Y133_K0.9090.37
127_R144_R0.8900.36
148_T152_N0.8840.36
40_V79_T0.8830.36
13_I24_L0.8750.35
53_G98_N0.8730.35
85_W96_G0.8710.35
71_V74_A0.8700.35
33_A121_R0.8590.34
24_L49_A0.8580.34
64_E70_S0.8530.34
15_Y111_D0.8270.32
27_T103_G0.8240.32
133_K142_T0.8240.32
70_S119_M0.8120.32
142_T149_I0.8030.31
89_R113_D0.7970.31
140_K145_T0.7960.31
148_T155_A0.7910.30
104_T111_D0.7860.30
56_R107_E0.7820.30
84_A98_N0.7810.30
33_A112_Q0.7720.29
48_V77_S0.7700.29
75_V102_T0.7700.29
23_D88_N0.7680.29
37_L81_H0.7680.29
31_E149_I0.7580.29
20_G76_D0.7480.28
58_A117_M0.7460.28
65_D73_D0.7410.28
12_D19_I0.7330.27
48_V81_H0.7320.27
71_V152_N0.7270.27
57_T131_G0.7230.27
146_E155_A0.7180.27
41_G61_G0.7170.27
40_V44_V0.7170.27
12_D30_V0.7140.26
104_T130_R0.7140.26
16_F99_Q0.7110.26
103_G143_G0.7090.26
34_L71_V0.7090.26
61_G89_R0.7080.26
42_R82_A0.6970.26
123_Y128_H0.6970.26
132_Q149_I0.6920.25
110_R147_G0.6860.25
83_P88_N0.6840.25
85_W151_V0.6830.25
53_G82_A0.6830.25
128_H142_T0.6810.25
87_A101_I0.6770.25
26_G150_G0.6680.24
25_D106_V0.6660.24
48_V117_M0.6640.24
79_T98_N0.6630.24
21_Q43_R0.6630.24
48_V53_G0.6610.24
61_G88_N0.6610.24
88_N96_G0.6600.24
29_T57_T0.6570.24
146_E149_I0.6540.23
115_N133_K0.6500.23
26_G96_G0.6450.23
61_G92_D0.6400.23
102_T122_S0.6320.22
85_W113_D0.6320.22
27_T71_V0.6320.22
13_I112_Q0.6250.22
59_T155_A0.6180.22
87_A153_V0.6160.22
15_Y114_I0.6080.21
45_A140_K0.6050.21
33_A132_Q0.6050.21
123_Y138_R0.6030.21
26_G100_H0.6010.21
43_R141_S0.5990.21
43_R103_G0.5990.21
57_T104_T0.5980.21
47_I95_T0.5930.21
28_K138_R0.5930.21
13_I27_T0.5900.21
12_D81_H0.5900.21
142_T147_G0.5890.21
72_T123_Y0.5880.20
109_T113_D0.5840.20
12_D115_N0.5820.20
150_G155_A0.5760.20
50_D149_I0.5730.20
77_S80_E0.5730.20
96_G150_G0.5730.20
61_G124_K0.5730.20
35_A42_R0.5720.20
64_E132_Q0.5720.20
37_L153_V0.5710.20
82_A86_L0.5690.20
56_R71_V0.5680.20
115_N131_G0.5670.20
102_T117_M0.5640.19
43_R130_R0.5620.19
130_R138_R0.5590.19
24_L116_R0.5550.19
12_D53_G0.5530.19
14_Q33_A0.5500.19
47_I101_I0.5470.19
73_D76_D0.5470.19
146_E153_V0.5470.19
34_L133_K0.5390.18
54_V83_P0.5370.18
86_L96_G0.5340.18
60_M121_R0.5310.18
96_G144_R0.5300.18
45_A86_L0.5290.18
62_G69_E0.5280.18
61_G144_R0.5270.18
91_N149_I0.5240.18
78_F130_R0.5240.18
129_E138_R0.5230.18
108_L114_I0.5220.18
81_H154_E0.5220.18
34_L127_R0.5210.18
92_D96_G0.5190.18
51_E62_G0.5190.18
45_A122_S0.5140.18
57_T84_A0.5140.18
115_N121_R0.5100.17
112_Q129_E0.5070.17
65_D74_A0.5060.17
117_M128_H0.5000.17
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j20O 1 0.8596 100 0.168 Contact Map
3j7aS 1 0.7427 100 0.169 Contact Map
4bpeM 1 0.8889 100 0.17 Contact Map
3j60S 1 0.883 100 0.175 Contact Map
3j38S 1 0.7953 100 0.176 Contact Map
3zeyM 1 0.8889 100 0.176 Contact Map
4ujpT 1 0.8421 100 0.222 Contact Map
4rb5M 1 0.6959 100 0.403 Contact Map
4tp8M 1 0.6667 100 0.448 Contact Map
3bbnM 1 0.5789 100 0.473 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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