Q9HSZ3 - HALSA - GREMLIN Contacts

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Q9HSZ3 - Uncharacterized protein

UniProt:	Q9HSZ3	Sequences: MSIDRDTFENTNEDELADLSVPDQVLGFLAANKDRAFKAHEIASQIGVDEGAVSTALSRLKGRNLVEHKATYWAITDDAERLDGYSGYERATALFNQQLGAEDKESWREHAPEEPHPSVEDEQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	123 (114)
Sequences:	123 (95)
Seq/√Len:	8.9

HALSA - Q9HSZ3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
8_F	36_A	3.182	0.93
21_V	52_A	2.863	0.88
5_R	8_F	2.622	0.83
3_I	8_F	2.555	0.81
85_Y	89_E	2.397	0.76
22_P	48_V	2.272	0.72
62_G	97_Q	2.187	0.69
52_A	61_K	2.156	0.68
7_T	69_K	2.070	0.65
21_V	56_A	2.045	0.64
3_I	36_A	1.899	0.58
80_E	97_Q	1.823	0.54
54_S	69_K	1.821	0.54
32_N	80_E	1.814	0.54
93_A	114_E	1.791	0.53
2_S	45_Q	1.713	0.50
44_S	47_G	1.684	0.48
39_A	50_E	1.643	0.47
49_D	52_A	1.637	0.46
32_N	83_D	1.629	0.46
78_D	81_R	1.622	0.46
19_L	23_D	1.614	0.45
41_E	107_W	1.578	0.44
5_R	36_A	1.576	0.44
25_V	56_A	1.474	0.40
2_S	37_F	1.470	0.39
32_N	105_E	1.463	0.39
76_T	82_L	1.439	0.38
24_Q	78_D	1.434	0.38
6_D	83_D	1.407	0.37
33_K	79_A	1.402	0.37
85_Y	88_Y	1.388	0.36
24_Q	34_D	1.388	0.36
5_R	67_E	1.388	0.36
21_V	48_V	1.370	0.35
53_V	56_A	1.333	0.34
4_D	7_T	1.323	0.34
61_K	78_D	1.312	0.33
48_V	52_A	1.294	0.32
37_F	111_A	1.283	0.32
44_S	52_A	1.256	0.31
5_R	56_A	1.235	0.30
38_K	54_S	1.232	0.30
32_N	35_R	1.223	0.30
75_I	84_G	1.216	0.30
70_A	92_T	1.215	0.30
11_T	101_A	1.196	0.29
38_K	82_L	1.190	0.29
75_I	91_A	1.171	0.28
67_E	74_A	1.151	0.27
79_A	84_G	1.115	0.26
2_S	20_S	1.111	0.26
21_V	107_W	1.101	0.26
49_D	78_D	1.086	0.25
12_N	105_E	1.084	0.25
37_F	91_A	1.079	0.25
25_V	53_V	1.077	0.25
34_D	111_A	1.035	0.23
58_S	61_K	1.031	0.23
3_I	13_E	1.028	0.23
16_L	65_L	1.002	0.22
6_D	40_H	0.996	0.22
42_I	102_E	0.976	0.22
65_L	74_A	0.975	0.22
18_D	103_D	0.966	0.21
54_S	99_L	0.958	0.21
15_E	102_E	0.943	0.21
53_V	92_T	0.942	0.21
2_S	38_K	0.942	0.21
47_G	109_E	0.892	0.19
37_F	41_E	0.877	0.19
43_A	81_R	0.870	0.19
5_R	51_G	0.869	0.19
103_D	109_E	0.868	0.19
16_L	20_S	0.861	0.19
83_D	108_R	0.858	0.18
34_D	84_G	0.856	0.18
22_P	97_Q	0.846	0.18
52_A	56_A	0.843	0.18
7_T	96_N	0.841	0.18
15_E	27_G	0.837	0.18
56_A	112_P	0.829	0.18
99_L	102_E	0.826	0.18
17_A	47_G	0.806	0.17
52_A	55_T	0.803	0.17
88_Y	91_A	0.802	0.17
107_W	111_A	0.798	0.17
62_G	106_S	0.789	0.17
13_E	99_L	0.786	0.17
4_D	74_A	0.784	0.17
26_L	86_S	0.784	0.17
17_A	34_D	0.782	0.17
20_S	56_A	0.774	0.16
53_V	74_A	0.765	0.16
48_V	101_A	0.763	0.16
1_M	113_E	0.761	0.16
35_R	90_R	0.760	0.16
48_V	98_Q	0.756	0.16
50_E	104_K	0.756	0.16
64_N	113_E	0.752	0.16
43_A	103_D	0.742	0.16
5_R	23_D	0.738	0.16
39_A	52_A	0.737	0.16
99_L	109_E	0.736	0.15
37_F	85_Y	0.731	0.15
20_S	81_R	0.730	0.15
75_I	106_S	0.719	0.15
26_L	53_V	0.718	0.15
8_F	25_V	0.717	0.15
17_A	30_A	0.716	0.15
65_L	76_T	0.709	0.15
5_R	9_E	0.704	0.15
27_G	80_E	0.696	0.15
51_G	79_A	0.695	0.15
39_A	51_G	0.694	0.15
19_L	95_F	0.693	0.15
37_F	82_L	0.691	0.15
46_I	92_T	0.691	0.15
33_K	51_G	0.690	0.14
42_I	68_H	0.689	0.14
53_V	63_R	0.682	0.14
5_R	100_G	0.679	0.14
26_L	75_I	0.671	0.14
28_F	68_H	0.665	0.14
36_A	69_K	0.660	0.14
51_G	67_E	0.652	0.14
23_D	69_K	0.644	0.14
64_N	101_A	0.628	0.13
58_S	97_Q	0.627	0.13
34_D	106_S	0.624	0.13
55_T	112_P	0.622	0.13
58_S	103_D	0.622	0.13
10_N	23_D	0.621	0.13
22_P	40_H	0.621	0.13
54_S	61_K	0.620	0.13
28_F	63_R	0.611	0.13
83_D	101_A	0.610	0.13
14_D	83_D	0.607	0.13
33_K	52_A	0.606	0.13
20_S	94_L	0.605	0.13
4_D	98_Q	0.604	0.13
51_G	87_G	0.603	0.13
40_H	89_E	0.602	0.13
13_E	37_F	0.595	0.13
19_L	96_N	0.589	0.12
83_D	99_L	0.579	0.12
103_D	106_S	0.577	0.12
65_L	78_D	0.575	0.12
47_G	105_E	0.571	0.12
74_A	78_D	0.566	0.12
20_S	30_A	0.564	0.12
56_A	102_E	0.556	0.12
60_L	68_H	0.555	0.12
27_G	99_L	0.548	0.12
39_A	61_K	0.547	0.12
19_L	25_V	0.543	0.12
31_A	56_A	0.539	0.12
3_I	46_I	0.535	0.11
36_A	56_A	0.535	0.11
46_I	52_A	0.532	0.11
14_D	51_G	0.529	0.11
9_E	46_I	0.528	0.11
45_Q	82_L	0.523	0.11
45_Q	92_T	0.521	0.11
6_D	9_E	0.521	0.11
10_N	106_S	0.518	0.11
44_S	64_N	0.516	0.11
51_G	107_W	0.513	0.11
25_V	42_I	0.512	0.11
35_R	82_L	0.502	0.11
61_K	115_P	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2lnbA	1	0.6423	98.6	0.783	Contact Map
1qgpA	1	0.5854	98.1	0.813	Contact Map
1q1hA	1	0.6341	98	0.821	Contact Map
3u1dA	2	0.9675	97.8	0.826	Contact Map
2mlgA	1	0.626	97.7	0.83	Contact Map
1xmkA	1	0.6016	97.7	0.83	Contact Map
2heoA	1	0.4715	97.7	0.832	Contact Map
3pqkA	2	0.7317	97.7	0.833	Contact Map
1qbjA	1	0.4959	97.6	0.835	Contact Map
1oyiA	1	0.4797	97.6	0.835	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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