Q9HST5 - HALSA - GREMLIN Contacts

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Q9HST5 - Molybdenum cofactor biosynthesis protein

UniProt:	Q9HST5	Sequences: MSGLELDATQLDRYSRHIIMDDVGATGQAALREAAVLVVGAGGLGSPVIQYLAAAGVGTIGIADDDAVELSNLQRQTIHGTDDVGEQKVDSAAAFVDTLNPDVDVQRHDQRVTADTVTDLIAAYDVVVDASDNFRTRYLINDACTLAGVPFSHGAIFQFEGQVTTFTGGDDGPCYRCLFPEAPPAGTVPDCATAGVLGVLPGTIGSIQATETVKHILGVGDSLDGRLLFYDAADMSFETVALAQRPECPICGDSPVVDSVQEVAYTESCAVTGDATTE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	278 (236)
Sequences:	6804 (4527)
Seq/√Len:	294.7

ECOLI - THIF MOEB TCDA
BACSU - MOEB THIF TCDA
HALSA - Q9HST5
SULSO - Q980J4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
65_D	111_R	3.245	1.00
59_T	104_D	3.213	1.00
86_E	94_A	3.199	1.00
93_A	97_D	3.180	1.00
35_A	59_T	3.081	1.00
79_H	91_S	2.954	1.00
61_G	124_Y	2.948	1.00
10_Q	32_R	2.926	1.00
35_A	61_G	2.861	1.00
59_T	106_Q	2.861	1.00
87_Q	109_D	2.698	1.00
211_E	214_K	2.564	1.00
81_T	101_P	2.511	1.00
38_V	49_I	2.448	1.00
48_V	128_V	2.446	1.00
83_D	86_E	2.406	1.00
128_V	212_T	2.400	1.00
154_G	204_I	2.308	1.00
49_I	96_V	2.286	1.00
226_R	239_T	2.222	1.00
126_V	212_T	2.167	1.00
118_T	146_L	2.166	1.00
78_I	92_A	2.159	1.00
127_V	144_C	2.069	1.00
93_A	107_R	2.027	1.00
61_G	108_H	2.025	1.00
37_L	124_Y	2.008	1.00
174_C	177_C	1.941	1.00
154_G	208_Q	1.929	1.00
41_A	62_I	1.913	1.00
10_Q	102_D	1.899	1.00
34_A	216_I	1.877	1.00
90_D	109_D	1.840	1.00
174_C	248_C	1.836	1.00
23_V	217_L	1.834	1.00
161_G	204_I	1.829	1.00
142_D	176_R	1.727	1.00
131_S	136_T	1.726	1.00
51_Y	202_G	1.692	1.00
23_V	27_G	1.686	1.00
29_A	33_E	1.678	1.00
165_T	215_H	1.678	1.00
14_Y	100_N	1.672	1.00
89_V	109_D	1.671	1.00
163_V	207_I	1.652	1.00
15_S	19_I	1.646	1.00
82_D	98_T	1.642	1.00
118_T	147_A	1.619	1.00
89_V	107_R	1.604	1.00
122_A	147_A	1.602	1.00
80_G	98_T	1.593	1.00
80_G	95_F	1.592	1.00
46_S	78_I	1.574	1.00
90_D	107_R	1.549	1.00
49_I	62_I	1.527	1.00
177_C	248_C	1.512	1.00
47_P	50_Q	1.491	1.00
112_V	117_V	1.456	1.00
95_F	98_T	1.451	1.00
53_A	103_V	1.445	1.00
48_V	130_A	1.431	1.00
83_D	95_F	1.390	1.00
37_L	63_A	1.382	1.00
35_A	124_Y	1.378	1.00
36_V	126_V	1.374	1.00
86_E	90_D	1.372	1.00
31_L	213_V	1.360	1.00
207_I	237_F	1.336	1.00
87_Q	90_D	1.322	1.00
230_Y	235_M	1.307	1.00
61_G	106_Q	1.306	1.00
143_A	147_A	1.294	1.00
80_G	83_D	1.279	1.00
199_V	210_T	1.236	1.00
50_Q	77_T	1.228	1.00
110_Q	116_T	1.217	1.00
126_V	152_S	1.215	1.00
53_A	96_V	1.209	1.00
83_D	94_A	1.195	1.00
17_H	74_Q	1.195	1.00
96_V	105_V	1.165	1.00
156_I	201_P	1.164	1.00
205_G	209_A	1.163	1.00
67_A	87_Q	1.162	1.00
231_D	234_D	1.159	1.00
173_P	177_C	1.152	1.00
100_N	103_V	1.144	1.00
50_Q	54_A	1.143	1.00
113_T	116_T	1.141	1.00
68_V	91_S	1.139	1.00
72_N	88_K	1.113	1.00
39_V	140_I	1.111	1.00
41_A	92_A	1.107	1.00
230_Y	237_F	1.107	1.00
203_T	230_Y	1.101	1.00
11_L	25_A	1.100	1.00
37_L	121_I	1.085	1.00
117_V	143_A	1.083	1.00
114_A	142_D	1.081	1.00
17_H	28_Q	1.076	1.00
79_H	83_D	1.068	1.00
141_N	145_T	1.060	1.00
165_T	211_E	1.056	1.00
190_D	193_T	1.051	1.00
138_Y	180_P	1.051	1.00
173_P	225_G	1.040	1.00
97_D	103_V	1.036	1.00
66_D	72_N	1.032	1.00
118_T	143_A	1.026	1.00
66_D	88_K	1.024	1.00
78_I	96_V	1.024	1.00
152_S	215_H	1.021	1.00
144_C	151_F	1.009	1.00
210_T	232_A	1.004	1.00
152_S	212_T	1.004	1.00
129_D	140_I	1.000	1.00
55_A	213_V	0.999	1.00
138_Y	176_R	0.997	1.00
30_A	34_A	0.996	1.00
54_A	99_L	0.996	1.00
131_S	140_I	0.990	1.00
83_D	91_S	0.988	1.00
142_D	146_L	0.986	1.00
86_E	91_S	0.982	1.00
24_G	27_G	0.974	1.00
46_S	50_Q	0.973	1.00
126_V	216_I	0.969	1.00
20_M	159_F	0.965	1.00
90_D	93_A	0.959	1.00
93_A	105_V	0.956	1.00
18_I	25_A	0.952	1.00
39_V	63_A	0.944	1.00
35_A	106_Q	0.944	1.00
163_V	204_I	0.936	1.00
133_N	136_T	0.925	1.00
210_T	230_Y	0.924	1.00
117_V	139_L	0.919	1.00
215_H	222_S	0.918	1.00
123_A	149_V	0.915	1.00
236_S	239_T	0.909	1.00
140_I	151_F	0.907	1.00
11_L	18_I	0.905	1.00
129_D	137_R	0.904	1.00
32_R	102_D	0.903	1.00
68_V	79_H	0.900	1.00
51_Y	77_T	0.900	1.00
30_A	218_G	0.900	1.00
13_R	81_T	0.898	1.00
53_A	60_I	0.895	1.00
46_S	79_H	0.895	1.00
125_D	149_V	0.894	1.00
110_Q	119_D	0.893	1.00
94_A	98_T	0.892	1.00
106_Q	123_A	0.890	1.00
37_L	61_G	0.882	1.00
202_G	206_S	0.880	1.00
25_A	29_A	0.864	1.00
159_F	233_A	0.851	1.00
152_S	165_T	0.847	1.00
119_D	122_A	0.846	1.00
156_I	196_V	0.844	1.00
126_V	215_H	0.842	1.00
108_H	124_Y	0.840	1.00
167_T	172_G	0.839	1.00
50_Q	95_F	0.837	1.00
189_P	194_A	0.834	1.00
141_N	151_F	0.817	1.00
127_V	149_V	0.817	1.00
118_T	122_A	0.815	1.00
44_L	208_Q	0.815	1.00
228_L	239_T	0.814	1.00
49_I	92_A	0.808	1.00
200_L	232_A	0.806	1.00
121_I	124_Y	0.802	1.00
65_D	109_D	0.801	1.00
50_Q	99_L	0.801	1.00
228_L	237_F	0.800	1.00
54_A	74_Q	0.799	0.99
133_N	137_R	0.794	0.99
176_R	179_F	0.794	0.99
26_T	30_A	0.787	0.99
41_A	49_I	0.782	0.99
30_A	33_E	0.778	0.99
63_A	112_V	0.774	0.99
121_I	143_A	0.772	0.99
60_I	96_V	0.771	0.99
121_I	144_C	0.764	0.99
63_A	120_L	0.760	0.99
70_L	81_T	0.759	0.99
139_L	143_A	0.755	0.99
47_P	202_G	0.744	0.99
141_N	174_C	0.743	0.99
203_T	207_I	0.741	0.99
17_H	55_A	0.741	0.99
168_G	171_D	0.740	0.99
81_T	84_V	0.737	0.99
167_T	171_D	0.735	0.99
72_N	75_R	0.734	0.99
229_F	240_V	0.731	0.99
143_A	146_L	0.728	0.99
112_V	116_T	0.727	0.99
168_G	172_G	0.723	0.99
51_Y	209_A	0.715	0.99
137_R	155_A	0.713	0.99
228_L	235_M	0.707	0.99
70_L	84_V	0.706	0.99
57_V	216_I	0.701	0.99
129_D	153_H	0.701	0.99
14_Y	103_V	0.700	0.99
94_A	97_D	0.699	0.99
196_V	201_P	0.698	0.99
219_V	233_A	0.692	0.99
49_I	78_I	0.691	0.99
48_V	205_G	0.689	0.99
96_V	103_V	0.689	0.99
158_Q	200_L	0.689	0.99
62_I	105_V	0.688	0.98
190_D	194_A	0.687	0.98
75_R	88_K	0.685	0.98
39_V	112_V	0.684	0.98
138_Y	142_D	0.682	0.98
53_A	105_V	0.680	0.98
49_I	60_I	0.679	0.98
42_G	45_G	0.679	0.98
226_R	241_A	0.679	0.98
55_A	198_G	0.679	0.98
47_P	51_Y	0.675	0.98
121_I	127_V	0.673	0.98
41_A	79_H	0.673	0.98
201_P	206_S	0.673	0.98
174_C	179_F	0.671	0.98
51_Y	206_S	0.670	0.98
197_L	210_T	0.669	0.98
31_L	58_G	0.669	0.98
121_I	147_A	0.669	0.98
120_L	124_Y	0.668	0.98
127_V	140_I	0.667	0.98
12_D	70_L	0.667	0.98
153_H	164_T	0.666	0.98
89_V	105_V	0.663	0.98
66_D	75_R	0.663	0.98
196_V	200_L	0.660	0.98
78_I	95_F	0.658	0.98
213_V	217_L	0.656	0.98
171_D	244_Q	0.651	0.98
229_F	238_E	0.649	0.98
27_G	217_L	0.647	0.98
138_Y	179_F	0.647	0.98
90_D	94_A	0.643	0.98
30_A	217_L	0.642	0.98
116_T	120_L	0.642	0.98
88_K	132_D	0.642	0.98
131_S	137_R	0.640	0.98
47_P	205_G	0.640	0.98
116_T	139_L	0.640	0.98
172_G	179_F	0.635	0.97
148_G	169_G	0.634	0.97
46_S	68_V	0.629	0.97
41_A	89_V	0.629	0.97
97_D	104_D	0.626	0.97
26_T	29_A	0.624	0.97
13_R	102_D	0.623	0.97
232_A	235_M	0.616	0.97
58_G	100_N	0.614	0.97
69_E	72_N	0.605	0.97
128_V	208_Q	0.605	0.97
160_E	231_D	0.604	0.97
63_A	117_V	0.604	0.97
212_T	216_I	0.603	0.97
14_Y	28_Q	0.599	0.96
199_V	206_S	0.598	0.96
34_A	57_V	0.598	0.96
72_N	132_D	0.596	0.96
34_A	125_D	0.596	0.96
36_V	216_I	0.593	0.96
66_D	132_D	0.591	0.96
36_V	212_T	0.589	0.96
17_H	20_M	0.587	0.96
83_D	98_T	0.585	0.96
43_G	201_P	0.581	0.96
66_D	71_S	0.580	0.96
219_V	222_S	0.575	0.95
12_D	15_S	0.575	0.95
114_A	139_L	0.574	0.95
28_Q	31_L	0.570	0.95
77_T	202_G	0.570	0.95
20_M	23_V	0.568	0.95
121_I	149_V	0.567	0.95
112_V	121_I	0.567	0.95
182_A	185_A	0.567	0.95
61_G	120_L	0.566	0.95
214_K	220_G	0.564	0.95
95_F	99_L	0.561	0.95
203_T	210_T	0.561	0.95
50_Q	78_I	0.561	0.95
159_F	197_L	0.560	0.95
117_V	120_L	0.559	0.95
36_V	57_V	0.557	0.95
97_D	105_V	0.557	0.95
11_L	15_S	0.557	0.95
31_L	217_L	0.553	0.94
207_I	228_L	0.553	0.94
172_G	176_R	0.552	0.94
226_R	229_F	0.552	0.94
23_V	159_F	0.552	0.94
35_A	123_A	0.550	0.94
54_A	77_T	0.547	0.94
91_S	94_A	0.545	0.94
41_A	60_I	0.544	0.94
15_S	18_I	0.544	0.94
47_P	77_T	0.544	0.94
43_G	74_Q	0.544	0.94
156_I	200_L	0.543	0.94
107_R	110_Q	0.541	0.94
48_V	212_T	0.541	0.94
164_T	173_P	0.541	0.94
42_G	76_Q	0.540	0.94
159_F	219_V	0.540	0.94
91_S	95_F	0.537	0.94
36_V	128_V	0.536	0.94
108_H	120_L	0.535	0.93
177_C	180_P	0.532	0.93
51_Y	54_A	0.532	0.93
61_G	123_A	0.531	0.93
40_G	45_G	0.531	0.93
44_L	154_G	0.529	0.93
129_D	132_D	0.528	0.93
189_P	193_T	0.526	0.93
34_A	212_T	0.526	0.93
43_G	76_Q	0.525	0.93
206_S	210_T	0.525	0.93
221_D	234_D	0.525	0.93
145_T	166_F	0.525	0.93
54_A	198_G	0.519	0.92
62_I	92_A	0.518	0.92
112_V	120_L	0.517	0.92
75_R	132_D	0.516	0.92
42_G	75_R	0.514	0.92
173_P	176_R	0.514	0.92
158_Q	194_A	0.512	0.92
211_E	223_L	0.511	0.92
64_D	89_V	0.511	0.92
128_V	154_G	0.508	0.92
176_R	181_E	0.503	0.91
72_N	76_Q	0.503	0.91
47_P	206_S	0.503	0.91
174_C	178_L	0.502	0.91
12_D	71_S	0.502	0.91
23_V	213_V	0.501	0.91
203_T	232_A	0.501	0.91
166_F	242_L	0.501	0.91
202_G	209_A	0.500	0.91
42_G	66_D	0.500	0.91
23_V	197_L	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1zud1	2	0.8633	100	0.247	Contact Map
1jw9B	2	0.8633	100	0.258	Contact Map
1tt5B	1	0.9712	100	0.266	Contact Map
4gslA	2	0.9784	100	0.279	Contact Map
2nvuB	1	0.9856	100	0.28	Contact Map
3h8vA	2	0.7662	100	0.294	Contact Map
3h5nA	3	0.8885	100	0.295	Contact Map
3ruiA	2	0.9784	100	0.299	Contact Map
1y8qB	1	0.9245	100	0.332	Contact Map
1y8qA	1	0.8381	100	0.336	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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