Q9HSS5 - HALSA - GREMLIN Contacts

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Q9HSS5 - Ribosomal protein S6 modification protein

UniProt:	Q9HSS5	Sequences: MLGLAVANDAETFARMQEPLAERGVRAEHVTVTGSVTRLDAPPVDADRFDAGFVYPGRLMEGGVVDAFIDVPWVNGREAVLRSRNKAGALALLSDAGVPVPETVYVSNPADEDAVRGVFEALEPPVVVKPNSATRGVGVTKVSDPDSLGGVTDYLELVHDYRATGDKSYLIQAFVPDATDYRVMVLDGRVVGAVRRDSAGWKHNVHQGATAAGVSLPDRLRALAVDAAAALDVSLLGVDVLATDERAVVVETNARPTIDDTAKYEAEFYDRLAALVRRTAGDGRA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	285 (254)
Sequences:	29228 (17635)
Seq/√Len:	1106.5

ECOLI - RIMK PURT ACCC DDLB PUR2 PURK DDLA GSHB CARB
BACSU - ACCC2 PURT ACCC1 PUR2 PURK BACD DDL PYC CARB CARY
HALSA - Q9HSS5 Q9HQ67 Q9HRM3 Q9HPP8
SULSO - Q7LXR0 LYSX Q97VY6 PURT Q7LXR2 PURK Q97W91 CARB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
102_E	173_A	3.768	1.00
222_A	226_D	3.067	1.00
144_D	147_S	2.959	1.00
120_E	145_P	2.850	1.00
243_T	246_R	2.799	1.00
116_R	149_G	2.599	1.00
124_P	145_P	2.425	1.00
104_V	121_A	2.421	1.00
93_L	249_V	2.300	1.00
64_V	81_L	2.211	1.00
108_N	114_A	2.174	1.00
225_V	229_A	2.167	1.00
93_L	227_A	2.118	1.00
192_G	195_R	2.112	1.00
99_P	246_R	2.103	1.00
193_A	196_R	2.103	1.00
191_V	196_R	2.045	1.00
87_A	105_Y	2.030	1.00
270_D	274_A	2.024	1.00
192_G	196_R	2.023	1.00
90_L	172_Q	2.007	1.00
191_V	194_V	1.990	1.00
141_K	174_F	1.989	1.00
145_P	149_G	1.963	1.00
191_V	195_R	1.963	1.00
87_A	91_A	1.833	1.00
64_V	68_F	1.734	1.00
91_A	95_D	1.733	1.00
88_G	91_A	1.716	1.00
143_S	147_S	1.710	1.00
118_V	122_L	1.709	1.00
116_R	145_P	1.706	1.00
94_S	102_E	1.686	1.00
19_P	22_E	1.675	1.00
82_R	88_G	1.654	1.00
181_Y	242_A	1.634	1.00
91_A	94_S	1.613	1.00
95_D	230_A	1.610	1.00
219_R	246_R	1.606	1.00
223_L	247_A	1.604	1.00
228_A	236_L	1.600	1.00
89_A	93_L	1.599	1.00
149_G	153_D	1.590	1.00
85_N	131_N	1.586	1.00
118_V	121_A	1.577	1.00
82_R	92_L	1.575	1.00
20_L	27_A	1.572	1.00
119_F	124_P	1.571	1.00
104_V	118_V	1.557	1.00
96_A	230_A	1.543	1.00
226_D	230_A	1.540	1.00
226_D	229_A	1.537	1.00
52_G	71_V	1.529	1.00
65_V	69_I	1.518	1.00
190_V	196_R	1.512	1.00
81_L	88_G	1.503	1.00
107_S	168_S	1.481	1.00
271_R	274_A	1.454	1.00
219_R	223_L	1.439	1.00
223_L	226_D	1.436	1.00
98_V	249_V	1.422	1.00
140_T	154_Y	1.415	1.00
59_L	84_R	1.397	1.00
99_P	223_L	1.386	1.00
234_S	237_G	1.371	1.00
76_G	79_A	1.362	1.00
219_R	222_A	1.362	1.00
150_G	154_Y	1.356	1.00
78_E	82_R	1.355	1.00
242_A	247_A	1.354	1.00
127_V	141_K	1.349	1.00
87_A	131_N	1.349	1.00
94_S	100_V	1.342	1.00
116_R	120_E	1.335	1.00
126_V	171_I	1.322	1.00
117_G	121_A	1.310	1.00
131_N	168_S	1.299	1.00
92_L	230_A	1.289	1.00
238_V	252_T	1.280	1.00
22_E	270_D	1.278	1.00
152_T	156_E	1.269	1.00
173_A	248_V	1.266	1.00
241_L	250_V	1.256	1.00
143_S	176_P	1.256	1.00
67_A	77_R	1.251	1.00
127_V	174_F	1.248	1.00
109_P	153_D	1.236	1.00
127_V	139_V	1.221	1.00
14_A	43_P	1.213	1.00
92_L	95_D	1.212	1.00
185_V	228_A	1.208	1.00
18_E	22_E	1.205	1.00
221_R	225_V	1.196	1.00
16_M	53_F	1.195	1.00
227_A	230_A	1.190	1.00
92_L	96_A	1.190	1.00
109_P	116_R	1.186	1.00
183_V	220_L	1.185	1.00
266_A	271_R	1.171	1.00
90_L	100_V	1.169	1.00
199_A	203_H	1.169	1.00
156_E	167_K	1.159	1.00
67_A	76_G	1.155	1.00
102_E	121_A	1.140	1.00
186_L	235_L	1.138	1.00
31_T	36_V	1.132	1.00
218_D	222_A	1.127	1.00
243_T	248_V	1.118	1.00
124_P	144_D	1.116	1.00
23_R	274_A	1.114	1.00
122_L	126_V	1.108	1.00
179_T	242_A	1.106	1.00
210_T	213_G	1.101	1.00
114_A	117_G	1.097	1.00
109_P	149_G	1.094	1.00
175_V	250_V	1.093	1.00
227_A	231_L	1.092	1.00
64_V	77_R	1.089	1.00
105_Y	168_S	1.085	1.00
28_E	49_F	1.085	1.00
91_A	103_T	1.083	1.00
40_D	45_D	1.073	1.00
140_T	151_V	1.067	1.00
55_Y	59_L	1.066	1.00
65_V	68_F	1.065	1.00
198_S	201_W	1.060	1.00
190_V	195_R	1.059	1.00
102_E	122_L	1.057	1.00
87_A	168_S	1.050	1.00
217_P	221_R	1.046	1.00
216_L	219_R	1.041	1.00
142_V	151_V	1.037	1.00
107_S	114_A	1.036	1.00
23_R	270_D	1.032	1.00
126_V	142_V	1.030	1.00
33_T	36_V	1.026	1.00
154_Y	157_L	1.024	1.00
153_D	157_L	1.022	1.00
99_P	248_V	1.020	1.00
113_D	116_R	1.018	1.00
186_L	271_R	1.016	1.00
183_V	224_A	1.015	1.00
78_E	81_L	1.015	1.00
67_A	73_W	1.012	1.00
19_P	270_D	1.010	1.00
175_V	248_V	1.008	1.00
52_G	66_D	1.007	1.00
173_A	243_T	0.996	1.00
179_T	195_R	0.985	1.00
83_S	231_L	0.985	1.00
190_V	194_V	0.985	1.00
103_T	172_Q	0.985	1.00
218_D	221_R	0.981	1.00
109_P	152_T	0.980	1.00
224_A	240_V	0.975	1.00
185_V	224_A	0.973	1.00
202_K	206_H	0.970	1.00
117_G	120_E	0.968	1.00
215_S	218_D	0.960	1.00
106_V	118_V	0.957	1.00
66_D	73_W	0.953	1.00
155_L	169_Y	0.948	1.00
210_T	214_V	0.947	1.00
85_N	132_S	0.942	1.00
222_A	225_V	0.940	1.00
119_F	126_V	0.938	1.00
223_L	227_A	0.935	1.00
228_A	231_L	0.934	1.00
109_P	113_D	0.932	1.00
80_V	254_A	0.921	1.00
267_E	270_D	0.917	1.00
216_L	242_A	0.914	1.00
181_Y	220_L	0.913	1.00
124_P	148_L	0.911	1.00
190_V	193_A	0.911	1.00
83_S	252_T	0.907	1.00
156_E	169_Y	0.907	1.00
132_S	166_D	0.903	1.00
119_F	145_P	0.902	1.00
235_L	255_R	0.901	1.00
66_D	71_V	0.899	1.00
219_R	226_D	0.897	1.00
94_S	103_T	0.896	1.00
64_V	78_E	0.891	1.00
140_T	155_L	0.887	1.00
20_L	273_A	0.887	1.00
20_L	25_V	0.885	1.00
14_A	18_E	0.884	1.00
17_Q	27_A	0.882	1.00
185_V	238_V	0.881	1.00
203_H	206_H	0.881	1.00
101_P	175_V	0.878	1.00
188_G	229_A	0.874	1.00
211_A	214_V	0.874	1.00
186_L	275_L	0.868	1.00
147_S	150_G	0.867	1.00
183_V	221_R	0.865	1.00
264_Y	271_R	0.865	1.00
268_F	271_R	0.864	1.00
266_A	269_Y	0.860	1.00
36_V	39_L	0.855	1.00
115_V	148_L	0.855	1.00
114_A	118_V	0.848	1.00
176_P	244_D	0.840	1.00
175_V	243_T	0.838	1.00
69_I	72_P	0.837	1.00
150_G	153_D	0.835	1.00
56_P	59_L	0.835	1.00
176_P	243_T	0.834	1.00
220_L	223_L	0.831	1.00
220_L	247_A	0.828	1.00
269_Y	273_A	0.824	1.00
113_D	117_G	0.818	1.00
56_P	60_M	0.817	1.00
106_V	115_V	0.816	1.00
34_G	37_T	0.814	1.00
87_A	170_L	0.813	1.00
128_V	171_I	0.810	1.00
108_N	113_D	0.804	1.00
245_E	248_V	0.803	1.00
85_N	168_S	0.791	1.00
201_W	204_N	0.786	1.00
185_V	236_L	0.783	1.00
273_A	276_V	0.776	1.00
115_V	152_T	0.776	1.00
131_N	170_L	0.776	1.00
238_V	249_V	0.776	1.00
146_D	149_G	0.776	1.00
197_D	201_W	0.768	1.00
40_D	44_V	0.768	1.00
151_V	155_L	0.761	1.00
21_A	24_G	0.756	1.00
242_A	245_E	0.750	1.00
119_F	148_L	0.748	1.00
17_Q	21_A	0.746	1.00
260_D	263_K	0.745	1.00
128_V	142_V	0.740	1.00
63_G	73_W	0.738	1.00
116_R	119_F	0.737	1.00
85_N	88_G	0.728	1.00
220_L	240_V	0.724	1.00
207_Q	210_T	0.720	1.00
264_Y	269_Y	0.719	1.00
204_N	207_Q	0.711	1.00
79_A	232_D	0.710	1.00
99_P	219_R	0.709	1.00
40_D	43_P	0.707	1.00
120_E	149_G	0.706	1.00
32_V	36_V	0.703	1.00
123_E	173_A	0.700	1.00
128_V	151_V	0.699	1.00
146_D	150_G	0.697	1.00
109_P	156_E	0.693	1.00
224_A	238_V	0.690	1.00
205_V	208_G	0.687	1.00
19_P	23_R	0.685	1.00
21_A	27_A	0.685	1.00
62_G	66_D	0.684	1.00
181_Y	240_V	0.684	1.00
93_L	252_T	0.683	1.00
223_L	240_V	0.679	1.00
203_H	208_G	0.675	1.00
51_A	74_V	0.673	1.00
240_V	247_A	0.673	1.00
78_E	88_G	0.672	1.00
188_G	192_G	0.668	1.00
151_V	154_Y	0.666	1.00
128_V	169_Y	0.661	1.00
215_S	219_R	0.660	1.00
87_A	103_T	0.658	1.00
64_V	67_A	0.657	1.00
55_Y	58_R	0.654	1.00
17_Q	29_H	0.653	1.00
51_A	54_V	0.650	1.00
51_A	276_V	0.648	1.00
106_V	109_P	0.647	1.00
274_A	277_R	0.645	1.00
152_T	169_Y	0.641	1.00
200_G	203_H	0.640	1.00
256_P	268_F	0.639	1.00
17_Q	43_P	0.637	1.00
101_P	248_V	0.636	1.00
88_G	92_L	0.635	1.00
204_N	208_G	0.632	1.00
233_V	236_L	0.631	1.00
185_V	225_V	0.630	1.00
187_D	191_V	0.630	1.00
143_S	174_F	0.630	1.00
92_L	231_L	0.627	1.00
197_D	200_G	0.626	1.00
91_A	105_Y	0.622	1.00
142_V	148_L	0.618	1.00
200_G	207_Q	0.618	1.00
58_R	63_G	0.617	1.00
173_A	246_R	0.616	1.00
122_L	173_A	0.616	1.00
198_S	203_H	0.615	1.00
203_H	207_Q	0.615	1.00
83_S	254_A	0.612	1.00
98_V	226_D	0.611	1.00
61_E	64_V	0.611	1.00
95_D	231_L	0.610	1.00
209_A	212_A	0.610	1.00
60_M	81_L	0.610	1.00
221_R	224_A	0.603	1.00
174_F	241_L	0.603	1.00
264_Y	268_F	0.601	1.00
273_A	277_R	0.600	1.00
79_A	233_V	0.598	1.00
15_R	260_D	0.595	1.00
25_V	277_R	0.595	1.00
77_R	81_L	0.594	1.00
125_P	143_S	0.593	1.00
98_V	223_L	0.593	1.00
18_E	21_A	0.592	1.00
199_A	205_V	0.584	1.00
201_W	205_V	0.582	1.00
142_V	147_S	0.582	1.00
57_G	60_M	0.581	1.00
33_T	37_T	0.580	1.00
224_A	228_A	0.578	1.00
96_A	227_A	0.578	1.00
72_P	277_R	0.577	1.00
268_F	272_L	0.577	1.00
125_P	174_F	0.576	1.00
100_V	103_T	0.573	1.00
228_A	233_V	0.572	1.00
226_D	231_L	0.572	1.00
183_V	240_V	0.572	1.00
94_S	104_V	0.571	1.00
224_A	227_A	0.571	1.00
206_H	209_A	0.569	1.00
271_R	275_L	0.569	1.00
63_G	66_D	0.568	1.00
31_T	34_G	0.568	1.00
272_L	275_L	0.568	1.00
118_V	171_I	0.568	1.00
228_A	238_V	0.567	1.00
265_E	268_F	0.564	1.00
235_L	256_P	0.562	1.00
90_L	103_T	0.562	1.00
27_A	31_T	0.560	1.00
128_V	152_T	0.559	1.00
33_T	39_L	0.558	1.00
108_N	156_E	0.557	1.00
125_P	141_K	0.554	1.00
92_L	227_A	0.552	1.00
73_W	77_R	0.547	1.00
199_A	202_K	0.544	1.00
202_K	205_V	0.544	1.00
200_G	204_N	0.544	1.00
197_D	202_K	0.544	1.00
176_P	179_T	0.542	1.00
34_G	38_R	0.542	1.00
109_P	115_V	0.542	1.00
132_S	168_S	0.540	1.00
208_G	211_A	0.536	1.00
93_L	100_V	0.535	1.00
57_G	62_G	0.534	1.00
67_A	78_E	0.533	1.00
201_W	206_H	0.533	1.00
119_F	123_E	0.530	1.00
140_T	150_G	0.526	1.00
96_A	231_L	0.526	1.00
176_P	241_L	0.524	1.00
199_A	204_N	0.524	1.00
29_H	32_V	0.523	1.00
119_F	125_P	0.521	1.00
143_S	197_D	0.521	1.00
101_P	250_V	0.519	1.00
15_R	18_E	0.518	1.00
61_E	81_L	0.514	1.00
93_L	96_A	0.511	1.00
35_S	38_R	0.510	1.00
153_D	156_E	0.510	1.00
180_D	239_D	0.509	1.00
266_A	272_L	0.508	1.00
104_V	122_L	0.507	1.00
219_R	247_A	0.506	1.00
184_M	235_L	0.504	1.00
76_G	232_D	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4qshA	4	0.7754	100	0.319	Contact Map
1a9xA	3	0.9684	100	0.321	Contact Map
3e5nA	2	0.9158	100	0.321	Contact Map
3u9tA	3	0.9368	100	0.322	Contact Map
4rcnA	6	0.8561	100	0.323	Contact Map
3n6rA	1	0.7509	100	0.323	Contact Map
3hblA	4	0.986	100	0.323	Contact Map
2qf7A	4	0.8246	100	0.323	Contact Map
4iwxA	3	0.9509	100	0.324	Contact Map
3vpdA	3	0.9614	100	0.325	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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