Q9HSR8 - HALSA - GREMLIN Contacts

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Q9HSR8 - Type I restriction modification enzyme, S subunit

UniProt:	Q9HSR8	Sequences: MSEQDATLDEFVEEGESESTDSANIDPNTLDQEQFGPFTLSTPGEWTAKRLGDIKQLITRGKQPTYDDDGVPVINQECIYWDGWHFENLRYLEEDVAEGWKEKYFPESGDVIVNSTGQGTLGRAQVYPGDQRRAIDSHVTLLRTDEQLCPHFHRYFFESHLGQALLYSMCVNGSTGQIELSKTRLDLLPTPLPPLEEQRKIASVLYNVDQAIQKTEAVIEKIERLKQGLLDDLFTKGLSESNSLRPSPEDHPGLYKKERRQTIPSEWNVESLQNLCVENITYGIVQPGPHVEDGVPYINTEDMTDGDIPTEGLSRTSPEIAEKYSRSQIHAEELVVTIRATIGAVDQVPPELEGANLTRGTARVVPGDKVDNTFLLWAIRSNNFQSELDARVKGTTFDEINLDQLGKIPVPHPDIDEQDRIVDELSTIEERMENEESYLEQLKRLKQGLMQDLLSGEVRTTDVDIPVLDAVAQHG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	475 (385)
Sequences:	3366 (3347)
Seq/√Len:	170.6

ECOLI - T1SK
HALSA - Q9HSR8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
339_R	360_G	4.256	1.00
360_G	399_E	4.156	1.00
138_H	179_E	4.015	1.00
339_R	399_E	3.854	1.00
116_T	179_E	3.821	1.00
110_D	143_R	3.308	1.00
116_T	138_H	3.160	1.00
149_C	199_R	3.078	1.00
221_K	441_Q	3.035	1.00
339_R	397_F	2.981	1.00
117_G	120_T	2.934	1.00
333_E	365_V	2.863	1.00
338_I	359_R	2.776	1.00
338_I	360_G	2.636	1.00
228_G	448_G	2.594	1.00
360_G	397_F	2.415	1.00
331_A	351_E	2.415	1.00
373_T	426_S	2.405	1.00
117_G	178_I	2.391	1.00
126_V	151_H	2.359	1.00
338_I	362_A	2.348	1.00
357_L	363_R	2.328	1.00
282_Y	285_V	2.324	1.00
116_T	177_Q	2.319	1.00
115_S	138_H	2.317	1.00
452_D	457_E	2.305	1.00
115_S	137_S	2.298	1.00
138_H	177_Q	2.180	1.00
402_L	406_G	2.172	1.00
330_H	365_V	2.117	1.00
285_V	359_R	2.112	1.00
371_D	419_D	2.055	1.00
55_K	142_L	2.042	1.00
231_D	451_Q	2.030	1.00
216_E	443_K	2.022	1.00
300_T	337_T	2.002	1.00
115_S	140_T	2.000	1.00
338_I	399_E	1.978	1.00
273_Q	406_G	1.937	1.00
339_R	359_R	1.924	1.00
338_I	358_T	1.874	1.00
340_A	397_F	1.854	1.00
270_E	274_N	1.838	1.00
57_L	60_R	1.836	1.00
340_A	398_D	1.827	1.00
282_Y	358_T	1.811	1.00
445_L	448_G	1.770	1.00
300_T	339_R	1.766	1.00
225_L	445_L	1.762	1.00
116_T	137_S	1.759	1.00
107_E	143_R	1.684	1.00
299_N	314_S	1.657	1.00
214_K	217_A	1.633	1.00
362_A	402_L	1.632	1.00
431_R	435_E	1.631	1.00
116_T	136_D	1.628	1.00
300_T	340_A	1.619	1.00
357_L	361_T	1.596	1.00
299_N	358_T	1.593	1.00
366_P	375_L	1.587	1.00
75_N	138_H	1.585	1.00
335_V	361_T	1.583	1.00
118_Q	178_I	1.566	1.00
135_I	141_L	1.565	1.00
114_N	123_R	1.554	1.00
50_R	187_L	1.551	1.00
340_A	396_T	1.550	1.00
441_Q	445_L	1.548	1.00
299_N	360_G	1.540	1.00
333_E	363_R	1.540	1.00
148_L	153_H	1.530	1.00
52_G	186_D	1.527	1.00
115_S	177_Q	1.525	1.00
276_C	364_V	1.517	1.00
75_N	78_C	1.497	1.00
136_D	139_V	1.494	1.00
115_S	179_E	1.493	1.00
56_Q	145_D	1.478	1.00
75_N	137_S	1.474	1.00
270_E	412_H	1.469	1.00
282_Y	338_I	1.466	1.00
118_Q	177_Q	1.465	1.00
112_I	139_V	1.464	1.00
182_K	186_D	1.462	1.00
76_Q	114_N	1.457	1.00
224_R	444_R	1.450	1.00
282_Y	360_G	1.436	1.00
285_V	358_T	1.432	1.00
151_H	206_Y	1.428	1.00
117_G	177_Q	1.428	1.00
155_Y	205_L	1.419	1.00
338_I	361_T	1.415	1.00
359_R	399_E	1.412	1.00
348_V	355_A	1.402	1.00
330_H	333_E	1.402	1.00
362_A	405_L	1.389	1.00
300_T	399_E	1.388	1.00
338_I	397_F	1.382	1.00
297_Y	359_R	1.380	1.00
327_S	356_N	1.374	1.00
76_Q	115_S	1.365	1.00
357_L	360_G	1.362	1.00
202_A	206_Y	1.356	1.00
50_R	189_P	1.355	1.00
450_M	454_L	1.351	1.00
299_N	359_R	1.349	1.00
140_T	182_K	1.333	1.00
48_A	191_P	1.329	1.00
282_Y	359_R	1.328	1.00
117_G	136_D	1.321	1.00
118_Q	138_H	1.320	1.00
338_I	402_L	1.308	1.00
144_T	150_P	1.307	1.00
361_T	399_E	1.302	1.00
370_V	375_L	1.299	1.00
232_D	452_D	1.290	1.00
300_T	358_T	1.287	1.00
340_A	360_G	1.285	1.00
136_D	177_Q	1.282	1.00
218_V	438_Y	1.276	1.00
359_R	362_A	1.273	1.00
299_N	399_E	1.272	1.00
339_R	362_A	1.261	1.00
297_Y	358_T	1.259	1.00
215_T	218_V	1.258	1.00
225_L	229_L	1.254	1.00
115_S	136_D	1.253	1.00
300_T	360_G	1.251	1.00
221_K	225_L	1.250	1.00
271_S	409_P	1.247	1.00
347_Q	376_L	1.241	1.00
137_S	140_T	1.238	1.00
271_S	407_K	1.237	1.00
149_C	202_A	1.229	1.00
366_P	372_N	1.226	1.00
300_T	361_T	1.225	1.00
219_I	435_E	1.221	1.00
211_A	215_T	1.215	1.00
282_Y	339_R	1.215	1.00
117_G	121_L	1.210	1.00
126_V	154_R	1.200	1.00
285_V	297_Y	1.192	1.00
300_T	397_F	1.181	1.00
286_Q	359_R	1.181	1.00
76_Q	118_Q	1.175	1.00
195_L	199_R	1.170	1.00
415_I	419_D	1.166	1.00
215_T	439_L	1.158	1.00
258_E	261_Q	1.157	1.00
120_T	178_I	1.157	1.00
286_Q	360_G	1.155	1.00
116_T	135_I	1.152	1.00
304_T	344_A	1.150	1.00
223_E	436_E	1.148	1.00
318_P	322_E	1.147	1.00
76_Q	116_T	1.147	1.00
117_G	138_H	1.144	1.00
214_K	434_N	1.144	1.00
202_A	205_L	1.144	1.00
337_T	397_F	1.139	1.00
362_A	397_F	1.131	1.00
339_R	361_T	1.121	1.00
136_D	179_E	1.121	1.00
76_Q	138_H	1.117	1.00
300_T	338_I	1.115	1.00
75_N	179_E	1.114	1.00
282_Y	399_E	1.106	1.00
415_I	418_Q	1.103	1.00
358_T	361_T	1.100	1.00
50_R	53_D	1.099	1.00
337_T	344_A	1.095	1.00
58_I	61_G	1.093	1.00
159_S	162_G	1.090	1.00
339_R	357_L	1.086	1.00
421_I	425_L	1.085	1.00
371_D	422_V	1.083	1.00
339_R	358_T	1.081	1.00
144_T	153_H	1.081	1.00
139_V	179_E	1.074	1.00
392_V	398_D	1.069	1.00
396_T	399_E	1.068	1.00
115_S	139_V	1.058	1.00
327_S	363_R	1.058	1.00
55_K	153_H	1.057	0.99
120_T	138_H	1.054	0.99
139_V	177_Q	1.052	0.99
454_L	458_V	1.048	0.99
338_I	401_N	1.045	0.99
217_A	221_K	1.041	0.99
116_T	120_T	1.039	0.99
114_N	118_Q	1.038	0.99
394_G	398_D	1.035	0.99
336_V	405_L	1.034	0.99
358_T	399_E	1.033	0.99
420_R	423_D	1.024	0.99
285_V	360_G	1.024	0.99
211_A	431_R	1.023	0.99
337_T	340_A	1.022	0.99
236_K	239_S	1.021	0.99
282_Y	362_A	1.009	0.99
302_D	312_G	1.009	0.99
329_I	348_V	1.004	0.99
338_I	357_L	0.997	0.99
285_V	338_I	0.997	0.99
284_I	359_R	0.988	0.99
112_I	127_Y	0.987	0.99
232_D	238_L	0.983	0.99
228_G	231_D	0.980	0.99
273_Q	407_K	0.980	0.99
299_N	302_D	0.979	0.99
137_S	179_E	0.978	0.99
216_E	439_L	0.972	0.99
229_L	449_L	0.966	0.99
49_K	53_D	0.963	0.99
169_M	184_R	0.961	0.99
135_I	138_H	0.960	0.99
284_I	339_R	0.960	0.99
76_Q	179_E	0.955	0.99
330_H	351_E	0.954	0.99
107_E	132_R	0.950	0.99
60_R	179_E	0.948	0.99
200_K	203_S	0.941	0.99
59_T	136_D	0.940	0.99
114_N	177_Q	0.939	0.99
377_W	425_L	0.936	0.99
61_G	138_H	0.935	0.99
300_T	304_T	0.934	0.99
226_K	446_K	0.933	0.99
285_V	357_L	0.929	0.99
282_Y	402_L	0.921	0.99
60_R	138_H	0.909	0.98
114_N	179_E	0.905	0.98
258_E	263_I	0.904	0.98
335_V	348_V	0.901	0.98
217_A	220_E	0.901	0.98
118_Q	137_S	0.898	0.98
115_S	181_S	0.897	0.98
216_E	220_E	0.897	0.98
448_G	452_D	0.895	0.98
341_T	344_A	0.893	0.98
285_V	339_R	0.892	0.98
114_N	120_T	0.890	0.98
118_Q	121_L	0.884	0.98
76_Q	120_T	0.883	0.98
437_S	441_Q	0.880	0.98
215_T	438_Y	0.877	0.98
231_D	236_K	0.877	0.98
285_V	399_E	0.877	0.98
453_L	458_V	0.876	0.98
362_A	399_E	0.874	0.98
154_R	158_E	0.868	0.98
105_F	132_R	0.868	0.98
341_T	396_T	0.864	0.98
282_Y	363_R	0.857	0.98
165_L	188_L	0.857	0.98
108_S	132_R	0.856	0.98
209_D	446_K	0.854	0.98
104_Y	115_S	0.854	0.98
136_D	141_L	0.850	0.98
337_T	341_T	0.850	0.98
75_N	136_D	0.848	0.98
117_G	163_Q	0.846	0.98
337_T	362_A	0.843	0.98
48_A	189_P	0.840	0.97
115_S	135_I	0.840	0.97
452_D	458_V	0.836	0.97
226_K	230_L	0.834	0.97
297_Y	338_I	0.833	0.97
114_N	117_G	0.831	0.97
340_A	343_G	0.830	0.97
303_M	337_T	0.830	0.97
337_T	360_G	0.829	0.97
336_V	364_V	0.828	0.97
76_Q	177_Q	0.827	0.97
235_T	238_L	0.827	0.97
347_Q	373_T	0.823	0.97
300_T	359_R	0.822	0.97
361_T	397_F	0.821	0.97
108_S	129_G	0.821	0.97
283_G	286_Q	0.821	0.97
162_G	166_L	0.817	0.97
327_S	360_G	0.814	0.97
282_Y	286_Q	0.809	0.97
235_T	239_S	0.808	0.97
117_G	137_S	0.801	0.97
78_C	88_N	0.799	0.97
120_T	177_Q	0.799	0.97
271_S	274_N	0.797	0.97
345_V	379_I	0.796	0.96
281_T	327_S	0.796	0.96
199_R	203_S	0.794	0.96
358_T	362_A	0.794	0.96
208_V	211_A	0.791	0.96
284_I	360_G	0.790	0.96
215_T	435_E	0.790	0.96
360_G	394_G	0.789	0.96
117_G	123_R	0.789	0.96
72_P	78_C	0.788	0.96
435_E	438_Y	0.788	0.96
140_T	179_E	0.786	0.96
73_V	120_T	0.785	0.96
202_A	209_D	0.784	0.96
162_G	188_L	0.783	0.96
358_T	397_F	0.782	0.96
286_Q	358_T	0.781	0.96
76_Q	104_Y	0.779	0.96
75_N	116_T	0.778	0.96
136_D	140_T	0.778	0.96
118_Q	175_T	0.777	0.96
284_I	324_Y	0.775	0.96
337_T	342_I	0.773	0.96
451_Q	454_L	0.769	0.96
282_Y	300_T	0.769	0.96
269_V	411_P	0.766	0.96
339_R	402_L	0.765	0.96
299_N	339_R	0.765	0.96
73_V	137_S	0.764	0.96
258_E	262_T	0.763	0.96
286_Q	297_Y	0.762	0.96
345_V	376_L	0.759	0.95
106_P	179_E	0.757	0.95
320_I	324_Y	0.755	0.95
321_A	356_N	0.755	0.95
232_D	237_G	0.752	0.95
206_Y	210_Q	0.751	0.95
173_G	178_I	0.748	0.95
116_T	139_V	0.747	0.95
286_Q	338_I	0.745	0.95
74_I	78_C	0.743	0.95
339_R	394_G	0.743	0.95
387_E	391_R	0.742	0.95
329_I	355_A	0.741	0.95
232_D	236_K	0.741	0.95
171_V	179_E	0.737	0.95
340_A	344_A	0.737	0.95
114_N	121_L	0.736	0.95
221_K	224_R	0.736	0.95
116_T	121_L	0.734	0.95
422_V	426_S	0.734	0.95
297_Y	361_T	0.733	0.94
124_A	157_F	0.733	0.94
115_S	134_A	0.732	0.94
77_E	118_Q	0.732	0.94
181_S	184_R	0.730	0.94
276_C	375_L	0.727	0.94
220_E	223_E	0.726	0.94
49_K	192_L	0.726	0.94
76_Q	137_S	0.725	0.94
387_E	409_P	0.722	0.94
77_E	117_G	0.722	0.94
118_Q	139_V	0.721	0.94
326_R	356_N	0.719	0.94
341_T	398_D	0.719	0.94
300_T	342_I	0.719	0.94
121_L	179_E	0.718	0.94
116_T	140_T	0.718	0.94
339_R	396_T	0.717	0.94
227_Q	231_D	0.715	0.94
417_E	421_I	0.715	0.94
356_N	359_R	0.713	0.94
360_G	396_T	0.713	0.94
221_K	445_L	0.713	0.94
269_V	409_P	0.712	0.94
121_L	139_V	0.711	0.94
299_N	312_G	0.711	0.94
328_Q	356_N	0.709	0.93
219_I	225_L	0.709	0.93
394_G	399_E	0.702	0.93
441_Q	444_R	0.702	0.93
148_L	192_L	0.694	0.93
360_G	401_N	0.694	0.93
399_E	402_L	0.693	0.93
300_T	398_D	0.690	0.93
76_Q	125_Q	0.689	0.92
137_S	181_S	0.688	0.92
211_A	438_Y	0.687	0.92
259_R	262_T	0.687	0.92
339_R	401_N	0.686	0.92
359_R	397_F	0.686	0.92
329_I	333_E	0.683	0.92
338_I	355_A	0.683	0.92
401_N	404_Q	0.683	0.92
115_S	182_K	0.681	0.92
338_I	405_L	0.681	0.92
297_Y	356_N	0.680	0.92
76_Q	117_G	0.678	0.92
392_V	399_E	0.678	0.92
298_I	355_A	0.677	0.92
340_A	358_T	0.674	0.92
121_L	138_H	0.673	0.92
230_L	233_L	0.673	0.92
284_I	338_I	0.673	0.92
229_L	233_L	0.672	0.91
75_N	117_G	0.672	0.91
59_T	115_S	0.670	0.91
138_H	141_L	0.670	0.91
211_A	218_V	0.670	0.91
282_Y	299_N	0.669	0.91
76_Q	80_Y	0.668	0.91
341_T	360_G	0.668	0.91
414_D	417_E	0.667	0.91
230_L	234_F	0.666	0.91
362_A	401_N	0.665	0.91
284_I	326_R	0.664	0.91
297_Y	360_G	0.664	0.91
233_L	238_L	0.662	0.91
195_L	198_Q	0.661	0.91
286_Q	399_E	0.659	0.91
60_R	115_S	0.658	0.91
282_Y	397_F	0.655	0.90
73_V	179_E	0.655	0.90
179_E	182_K	0.654	0.90
73_V	76_Q	0.653	0.90
173_G	179_E	0.653	0.90
285_V	300_T	0.651	0.90
72_P	76_Q	0.651	0.90
299_N	337_T	0.648	0.90
56_Q	143_R	0.648	0.90
104_Y	117_G	0.646	0.90
59_T	182_K	0.645	0.90
75_N	114_N	0.645	0.90
60_R	136_D	0.643	0.90
116_T	178_I	0.642	0.90
286_Q	362_A	0.641	0.89
60_R	137_S	0.640	0.89
120_T	125_Q	0.640	0.89
376_L	380_R	0.639	0.89
114_N	138_H	0.638	0.89
194_P	197_E	0.638	0.89
115_S	121_L	0.637	0.89
285_V	356_N	0.636	0.89
358_T	402_L	0.636	0.89
218_V	222_I	0.635	0.89
197_E	200_K	0.634	0.89
264_P	267_W	0.634	0.89
135_I	139_V	0.634	0.89
286_Q	320_I	0.634	0.89
284_I	356_N	0.632	0.89
222_I	227_Q	0.632	0.89
175_T	178_I	0.631	0.89
342_I	400_I	0.629	0.89
76_Q	136_D	0.626	0.88
275_L	370_V	0.622	0.88
101_K	106_P	0.619	0.88
327_S	338_I	0.619	0.88
77_E	116_T	0.619	0.88
165_L	169_M	0.618	0.88
355_A	358_T	0.617	0.88
138_H	178_I	0.615	0.87
385_Q	389_D	0.613	0.87
118_Q	122_G	0.612	0.87
77_E	115_S	0.611	0.87
337_T	359_R	0.611	0.87
300_T	401_N	0.611	0.87
80_Y	123_R	0.608	0.87
418_Q	422_V	0.607	0.87
317_S	320_I	0.603	0.86
77_E	177_Q	0.602	0.86
78_C	136_D	0.601	0.86
61_G	115_S	0.600	0.86
137_S	177_Q	0.600	0.86
128_P	151_H	0.600	0.86
300_T	329_I	0.599	0.86
340_A	359_R	0.599	0.86
120_T	123_R	0.597	0.86
419_D	423_D	0.597	0.86
117_G	175_T	0.596	0.86
151_H	155_Y	0.595	0.86
300_T	402_L	0.595	0.86
59_T	179_E	0.594	0.86
341_T	397_F	0.593	0.86
282_Y	401_N	0.593	0.86
54_I	148_L	0.593	0.86
57_L	140_T	0.593	0.86
297_Y	300_T	0.591	0.85
204_V	453_L	0.591	0.85
127_Y	133_R	0.591	0.85
121_L	177_Q	0.590	0.85
211_A	214_K	0.590	0.85
76_Q	139_V	0.589	0.85
101_K	138_H	0.587	0.85
75_N	118_Q	0.586	0.85
334_L	372_N	0.585	0.85
229_L	445_L	0.584	0.85
281_T	285_V	0.582	0.84
339_R	363_R	0.581	0.84
301_E	399_E	0.581	0.84
342_I	397_F	0.579	0.84
339_R	344_A	0.579	0.84
165_L	189_P	0.578	0.84
226_K	233_L	0.577	0.84
447_Q	451_Q	0.576	0.84
104_Y	141_L	0.575	0.84
275_L	410_V	0.570	0.83
223_E	229_L	0.569	0.83
80_Y	83_G	0.569	0.83
136_D	175_T	0.568	0.83
218_V	221_K	0.568	0.83
74_I	139_V	0.564	0.83
156_F	190_T	0.564	0.83
384_F	388_L	0.562	0.82
329_I	363_R	0.561	0.82
285_V	362_A	0.560	0.82
208_V	445_L	0.560	0.82
76_Q	79_I	0.559	0.82
113_V	177_Q	0.558	0.82
429_E	433_E	0.558	0.82
137_S	141_L	0.558	0.82
224_R	227_Q	0.557	0.82
140_T	180_L	0.557	0.82
104_Y	136_D	0.555	0.82
78_C	138_H	0.555	0.82
345_V	380_R	0.555	0.82
303_M	361_T	0.554	0.81
282_Y	327_S	0.553	0.81
106_P	133_R	0.553	0.81
281_T	363_R	0.552	0.81
211_A	225_L	0.552	0.81
342_I	355_A	0.551	0.81
302_D	358_T	0.551	0.81
61_G	137_S	0.550	0.81
226_K	229_L	0.548	0.81
337_T	399_E	0.547	0.81
329_I	357_L	0.547	0.81
213_Q	217_A	0.546	0.81
214_K	218_V	0.546	0.81
281_T	284_I	0.544	0.80
140_T	177_Q	0.544	0.80
116_T	141_L	0.544	0.80
238_L	258_E	0.543	0.80
284_I	358_T	0.542	0.80
387_E	408_I	0.542	0.80
285_V	327_S	0.541	0.80
339_R	398_D	0.541	0.80
165_L	168_S	0.541	0.80
114_N	122_G	0.541	0.80
101_K	177_Q	0.540	0.80
124_A	154_R	0.539	0.80
134_A	138_H	0.539	0.80
203_S	207_N	0.538	0.80
117_G	134_A	0.533	0.79
387_E	390_A	0.532	0.79
301_E	341_T	0.532	0.79
60_R	141_L	0.531	0.79
232_D	239_S	0.530	0.79
233_L	236_K	0.528	0.78
339_R	342_I	0.527	0.78
58_I	141_L	0.525	0.78
215_T	219_I	0.524	0.78
138_H	182_K	0.523	0.78
373_T	377_W	0.521	0.77
75_N	90_R	0.519	0.77
331_A	349_P	0.519	0.77
106_P	127_Y	0.518	0.77
138_H	181_S	0.518	0.77
357_L	362_A	0.518	0.77
303_M	344_A	0.517	0.77
61_G	104_Y	0.516	0.77
342_I	358_T	0.514	0.76
297_Y	333_E	0.513	0.76
284_I	327_S	0.513	0.76
360_G	402_L	0.512	0.76
52_G	187_L	0.511	0.76
73_V	139_V	0.510	0.76
73_V	115_S	0.510	0.76
61_G	136_D	0.509	0.76
230_L	236_K	0.507	0.76
124_A	158_E	0.507	0.76
215_T	225_L	0.506	0.75
222_I	226_K	0.506	0.75
300_T	363_R	0.506	0.75
104_Y	116_T	0.505	0.75
363_R	397_F	0.505	0.75
164_A	168_S	0.504	0.75
123_R	135_I	0.502	0.75
300_T	357_L	0.502	0.75
446_K	451_Q	0.501	0.75
299_N	338_I	0.500	0.75

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2y7cA	1	0.8695	100	0.369	Contact Map
1yf2A	1	0.8589	100	0.401	Contact Map
3okgA	2	0.7937	100	0.417	Contact Map
1ydxA	1	0.7558	100	0.47	Contact Map
2ih2A	1	0.3811	94.5	0.943	Contact Map
3s1sA	1	0.4674	34.9	0.968	Contact Map
4i3mA	2	0.1937	14.4	0.973	Contact Map
3rfyA	2	0.3684	9.8	0.975	Contact Map
2kfdA	1	0.0884	9.5	0.975	Contact Map
4nl9C	1	0.12	8.2	0.976	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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