TRUD - HALSA - GREMLIN Contacts

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TRUD - Probable tRNA pseudouridine synthase D

UniProt:	Q9HSG5	Sequences: MREAHPIERAVGMAYYASDSDGTGGRLRDSPADFRVRELEAFDTQPADAPTGDYPWLVVRATLHEWDTNDFARELANTVGMSRERVRWAGTKDRHAVTTQLFAVRDLDAAQVPEIRNADIEVVGRAGRGLEFGDLAGNAFEIVVRDPDAPERAAAVADELAAFGGGTVGTPNYFGQQRFGSKRPVTHEVGLAILRDDWEAAAMAYLGAPTEHEPADSQRAREYVAETRDWTGALAEFPQRLRYERTMLHELADGGSFRDAVETFPSNLQQLFVHAAQSYVFNRIVSERMARGLPFGEPVAGDVVWFADSDADAAVAQPDAARQQRVTDSRVDVMARHCERGRAFVTAPLVGTDTEFADGDPGEITRGVLDDLGLSRADFDLPGEFDSAGSRRAILLRPDLTVSHDPLAFEFALPSGSYATVVLREFLKPSPLAL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	434 (405)
Sequences:	695 (522)
Seq/√Len:	25.9

ECOLI - TRUD
HALSA - TRUD
SULSO - TRUD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
197_D	200_A	6.611	1.00
285_V	394_I	5.835	1.00
287_E	290_A	4.341	1.00
276_A	372_L	4.061	1.00
40_E	44_T	4.014	1.00
192_A	197_D	3.893	1.00
39_L	412_A	3.235	1.00
187_H	279_Y	3.165	1.00
58_V	103_A	3.089	1.00
333_V	337_H	2.973	1.00
71_F	118_A	2.957	1.00
346_T	391_R	2.939	1.00
61_A	102_F	2.881	1.00
22_G	428_K	2.800	1.00
61_A	71_F	2.683	0.99
103_A	126_A	2.659	0.99
25_G	144_V	2.570	0.99
223_Y	232_G	2.564	0.99
72_A	86_V	2.547	0.99
396_L	414_P	2.547	0.99
351_G	389_G	2.451	0.99
87_R	103_A	2.441	0.99
287_E	291_R	2.440	0.99
256_S	259_D	2.384	0.98
283_R	371_D	2.379	0.98
232_G	235_A	2.375	0.98
189_V	201_A	2.330	0.98
199_E	257_F	2.288	0.98
233_A	248_L	2.270	0.98
222_E	226_E	2.197	0.97
363_E	367_G	2.177	0.97
60_R	101_L	2.156	0.97
229_D	232_G	2.128	0.97
90_G	93_D	2.090	0.96
411_F	419_A	2.058	0.96
58_V	126_A	2.036	0.96
86_V	102_F	2.004	0.95
331_V	338_C	1.986	0.95
288_R	301_G	1.976	0.95
333_V	338_C	1.943	0.95
285_V	347_A	1.942	0.95
15_Y	290_A	1.933	0.94
369_L	379_F	1.913	0.94
333_V	336_R	1.893	0.94
399_D	412_A	1.889	0.94
145_R	173_Y	1.851	0.93
191_L	195_R	1.826	0.93
237_F	248_L	1.825	0.93
86_V	104_V	1.823	0.93
33_D	36_V	1.810	0.92
139_A	412_A	1.800	0.92
251_L	257_F	1.800	0.92
288_R	302_D	1.789	0.92
61_A	72_A	1.778	0.92
72_A	102_F	1.764	0.91
132_F	274_H	1.762	0.91
58_V	101_L	1.751	0.91
90_G	177_Q	1.732	0.90
171_P	285_V	1.731	0.90
280_V	350_V	1.721	0.90
334_M	338_C	1.717	0.90
157_A	161_A	1.714	0.90
65_E	95_H	1.679	0.89
187_H	275_A	1.671	0.89
250_E	256_S	1.665	0.89
250_E	259_D	1.662	0.88
192_A	204_A	1.650	0.88
89_A	135_L	1.646	0.88
223_Y	236_E	1.643	0.88
123_V	130_L	1.619	0.87
311_A	314_A	1.617	0.87
91_T	132_F	1.616	0.87
332_D	338_C	1.614	0.87
179_F	282_N	1.589	0.86
33_D	38_E	1.579	0.86
213_E	221_R	1.574	0.86
331_V	335_A	1.560	0.85
305_W	346_T	1.549	0.85
179_F	418_Y	1.548	0.85
34_F	38_E	1.543	0.84
269_Q	281_F	1.539	0.84
223_Y	227_T	1.533	0.84
55_P	105_R	1.525	0.84
328_D	332_D	1.520	0.83
177_Q	418_Y	1.502	0.83
92_K	140_F	1.493	0.82
71_F	102_F	1.492	0.82
140_F	177_Q	1.491	0.82
163_F	422_V	1.488	0.82
65_E	94_R	1.462	0.81
190_G	351_G	1.457	0.81
350_V	365_T	1.454	0.81
91_T	271_L	1.435	0.80
93_D	177_Q	1.430	0.79
90_G	178_R	1.428	0.79
161_A	167_T	1.427	0.79
375_S	378_D	1.424	0.79
329_S	332_D	1.421	0.79
35_R	99_T	1.418	0.79
347_A	359_G	1.396	0.78
63_L	71_F	1.392	0.78
92_K	138_N	1.380	0.77
92_K	98_T	1.376	0.77
89_A	133_G	1.366	0.76
396_L	417_S	1.364	0.76
236_E	245_R	1.362	0.76
411_F	422_V	1.361	0.76
120_I	123_V	1.358	0.76
90_G	418_Y	1.349	0.75
280_V	372_L	1.346	0.75
60_R	122_V	1.343	0.75
298_P	338_C	1.340	0.75
32_A	64_H	1.339	0.75
26_R	29_D	1.332	0.74
335_A	338_C	1.327	0.74
265_P	268_L	1.312	0.73
145_R	398_P	1.311	0.73
37_R	141_E	1.306	0.73
32_A	281_F	1.306	0.73
283_R	368_V	1.298	0.72
33_D	145_R	1.295	0.72
365_T	391_R	1.290	0.72
175_G	190_G	1.288	0.72
363_E	366_R	1.285	0.72
22_G	25_G	1.274	0.71
331_V	337_H	1.271	0.71
92_K	420_T	1.263	0.70
159_E	428_K	1.260	0.70
25_G	427_L	1.245	0.69
303_V	391_R	1.215	0.67
144_V	427_L	1.214	0.67
161_A	166_G	1.214	0.67
303_V	346_T	1.211	0.67
57_L	125_R	1.207	0.67
357_A	391_R	1.202	0.66
86_V	415_S	1.202	0.66
246_T	264_F	1.196	0.66
138_N	177_Q	1.193	0.66
31_P	65_E	1.188	0.65
96_A	183_R	1.187	0.65
93_D	98_T	1.184	0.65
31_P	64_H	1.182	0.65
336_R	339_E	1.179	0.65
223_Y	233_A	1.172	0.64
205_Y	247_M	1.169	0.64
175_G	425_E	1.166	0.64
357_A	365_T	1.161	0.64
271_L	279_Y	1.161	0.64
244_E	272_F	1.156	0.63
56_W	129_G	1.151	0.63
248_L	265_P	1.148	0.63
27_L	144_V	1.144	0.62
27_L	96_A	1.143	0.62
109_A	113_P	1.143	0.62
16_Y	429_P	1.135	0.62
328_D	335_A	1.134	0.62
74_E	78_T	1.127	0.61
92_K	100_Q	1.125	0.61
66_W	70_D	1.124	0.61
16_Y	428_K	1.124	0.61
280_V	368_V	1.115	0.60
192_A	200_A	1.111	0.60
60_R	121_E	1.111	0.60
130_L	133_G	1.107	0.60
231_T	252_A	1.104	0.60
191_L	276_A	1.100	0.59
332_D	336_R	1.097	0.59
142_I	201_A	1.096	0.59
178_R	418_Y	1.092	0.59
191_L	372_L	1.089	0.59
334_M	339_E	1.085	0.58
350_V	354_T	1.082	0.58
293_L	299_V	1.070	0.57
93_D	420_T	1.066	0.57
143_V	408_A	1.066	0.57
213_E	217_S	1.059	0.56
367_G	371_D	1.058	0.56
347_A	365_T	1.053	0.56
170_T	396_L	1.053	0.56
93_D	178_R	1.052	0.56
68_T	72_A	1.041	0.55
21_D	428_K	1.040	0.55
308_D	403_S	1.040	0.55
224_V	228_R	1.039	0.55
90_G	140_F	1.031	0.54
244_E	389_G	1.023	0.54
298_P	333_V	1.016	0.53
14_A	283_R	1.015	0.53
219_R	236_E	1.012	0.53
133_G	137_G	1.011	0.53
171_P	289_M	1.011	0.53
50_P	53_D	1.009	0.53
142_I	247_M	1.009	0.53
299_V	410_E	1.008	0.53
334_M	337_H	1.007	0.53
141_E	410_E	1.006	0.53
28_R	362_G	1.005	0.52
389_G	420_T	1.005	0.52
220_A	224_V	1.004	0.52
220_A	237_F	1.001	0.52
331_V	339_E	0.997	0.52
13_M	421_V	0.992	0.51
346_T	357_A	0.987	0.51
394_I	427_L	0.986	0.51
28_R	38_E	0.981	0.51
190_G	389_G	0.980	0.51
56_W	160_L	0.975	0.50
92_K	419_A	0.975	0.50
369_L	375_S	0.974	0.50
65_E	132_F	0.974	0.50
49_A	54_Y	0.973	0.50
181_S	184_P	0.972	0.50
23_T	159_E	0.972	0.50
303_V	356_F	0.970	0.50
77_N	120_I	0.967	0.50
27_L	113_P	0.966	0.50
288_R	304_V	0.959	0.49
192_A	209_P	0.957	0.49
187_H	271_L	0.955	0.49
352_T	386_D	0.955	0.49
68_T	179_F	0.951	0.48
63_L	98_T	0.945	0.48
293_L	412_A	0.945	0.48
238_P	241_L	0.936	0.47
199_E	203_M	0.935	0.47
117_N	242_R	0.930	0.47
328_D	334_M	0.930	0.47
234_L	249_H	0.927	0.47
138_N	419_A	0.923	0.46
401_T	410_E	0.923	0.46
22_G	427_L	0.918	0.46
269_Q	276_A	0.918	0.46
92_K	177_Q	0.917	0.46
210_T	213_E	0.915	0.46
294_P	298_P	0.914	0.46
193_I	385_F	0.913	0.46
218_Q	222_E	0.912	0.46
314_A	399_D	0.910	0.45
186_T	418_Y	0.906	0.45
243_Y	272_F	0.904	0.45
243_Y	268_L	0.904	0.45
332_D	337_H	0.900	0.45
133_G	190_G	0.897	0.44
201_A	261_V	0.894	0.44
93_D	138_N	0.893	0.44
115_I	123_V	0.889	0.44
160_L	426_F	0.885	0.44
313_A	316_A	0.884	0.44
345_V	395_L	0.883	0.43
176_Q	421_V	0.879	0.43
37_R	139_A	0.878	0.43
227_T	230_W	0.878	0.43
264_F	365_T	0.876	0.43
209_P	222_E	0.875	0.43
238_P	244_E	0.874	0.43
28_R	33_D	0.874	0.43
205_Y	297_E	0.873	0.43
133_G	175_G	0.873	0.43
138_N	420_T	0.872	0.43
140_F	419_A	0.871	0.43
247_M	349_L	0.864	0.42
202_A	363_E	0.862	0.42
156_V	159_E	0.861	0.42
57_L	174_F	0.854	0.41
332_D	339_E	0.852	0.41
95_H	132_F	0.849	0.41
71_F	75_L	0.846	0.41
234_L	238_P	0.845	0.41
83_R	96_A	0.842	0.41
109_A	125_R	0.842	0.41
347_A	391_R	0.842	0.41
376_R	381_L	0.839	0.40
97_V	297_E	0.838	0.40
277_Q	389_G	0.834	0.40
30_S	266_S	0.834	0.40
90_G	278_S	0.833	0.40
103_A	220_A	0.833	0.40
167_T	331_V	0.831	0.40
95_H	274_H	0.829	0.40
112_V	394_I	0.825	0.39
300_A	358_D	0.824	0.39
91_T	277_Q	0.823	0.39
93_D	140_F	0.821	0.39
351_G	391_R	0.820	0.39
161_A	409_F	0.820	0.39
414_P	417_S	0.818	0.39
63_L	68_T	0.816	0.39
63_L	92_K	0.811	0.38
274_H	416_G	0.808	0.38
27_L	354_T	0.807	0.38
280_V	353_D	0.806	0.38
184_P	188_E	0.806	0.38
271_L	375_S	0.803	0.38
310_D	315_V	0.798	0.37
266_S	353_D	0.798	0.37
179_F	186_T	0.797	0.37
279_Y	368_V	0.797	0.37
301_G	425_E	0.797	0.37
298_P	335_A	0.797	0.37
90_G	100_Q	0.796	0.37
413_L	425_E	0.795	0.37
69_N	91_T	0.791	0.37
327_T	330_R	0.790	0.37
331_V	334_M	0.790	0.37
140_F	278_S	0.788	0.37
298_P	340_R	0.782	0.36
139_A	410_E	0.778	0.36
173_Y	294_P	0.777	0.36
20_S	159_E	0.775	0.36
111_Q	115_I	0.774	0.36
352_T	380_D	0.772	0.36
269_Q	384_E	0.772	0.36
180_G	420_T	0.772	0.36
280_V	374_L	0.770	0.35
352_T	388_A	0.770	0.35
222_E	403_S	0.769	0.35
364_I	367_G	0.769	0.35
133_G	288_R	0.766	0.35
245_R	249_H	0.765	0.35
287_E	367_G	0.764	0.35
379_F	386_D	0.759	0.35
185_V	198_W	0.757	0.35
63_L	90_G	0.756	0.35
110_A	159_E	0.756	0.35
94_R	278_S	0.756	0.35
109_A	115_I	0.755	0.34
388_A	416_G	0.755	0.34
223_Y	229_D	0.752	0.34
311_A	316_A	0.751	0.34
251_L	261_V	0.750	0.34
177_Q	278_S	0.749	0.34
286_S	424_R	0.748	0.34
174_F	308_D	0.746	0.34
154_A	161_A	0.743	0.34
331_V	336_R	0.742	0.34
177_Q	420_T	0.740	0.33
378_D	415_S	0.739	0.33
143_V	273_V	0.737	0.33
265_P	351_G	0.736	0.33
193_I	279_Y	0.734	0.33
163_F	225_A	0.734	0.33
62_T	121_E	0.733	0.33
133_G	138_N	0.732	0.33
137_G	190_G	0.730	0.33
328_D	336_R	0.729	0.33
76_A	81_M	0.729	0.33
19_D	189_V	0.727	0.33
56_W	114_E	0.727	0.33
174_F	388_A	0.726	0.33
297_E	411_F	0.722	0.32
163_F	285_V	0.721	0.32
288_R	294_P	0.720	0.32
140_F	275_A	0.719	0.32
284_I	299_V	0.719	0.32
332_D	335_A	0.717	0.32
63_L	93_D	0.717	0.32
264_F	385_F	0.715	0.32
97_V	116_R	0.715	0.32
171_P	185_V	0.714	0.32
23_T	398_P	0.714	0.32
175_G	424_R	0.713	0.32
248_L	252_A	0.712	0.32
39_L	139_A	0.711	0.32
131_E	362_G	0.710	0.32
190_G	425_E	0.707	0.31
234_L	299_V	0.706	0.31
303_V	357_A	0.703	0.31
161_A	399_D	0.702	0.31
77_N	80_G	0.702	0.31
45_Q	48_D	0.701	0.31
57_L	120_I	0.700	0.31
74_E	344_F	0.700	0.31
187_H	277_Q	0.700	0.31
89_A	103_A	0.700	0.31
294_P	383_G	0.698	0.31
29_D	35_R	0.698	0.31
347_A	394_I	0.697	0.31
353_D	388_A	0.697	0.31
140_F	420_T	0.696	0.31
364_I	368_V	0.695	0.31
358_D	361_P	0.694	0.31
111_Q	114_E	0.694	0.31
59_V	65_E	0.693	0.30
328_D	338_C	0.691	0.30
232_G	236_E	0.690	0.30
277_Q	420_T	0.690	0.30
90_G	138_N	0.685	0.30
346_T	365_T	0.685	0.30
243_Y	264_F	0.683	0.30
23_T	407_L	0.682	0.30
329_S	333_V	0.682	0.30
138_N	277_Q	0.682	0.30
34_F	140_F	0.681	0.30
133_G	169_G	0.676	0.29
93_D	419_A	0.676	0.29
130_L	422_V	0.672	0.29
281_F	341_G	0.669	0.29
291_R	360_D	0.667	0.29
79_V	288_R	0.666	0.29
30_S	406_P	0.666	0.29
14_A	39_L	0.664	0.29
315_V	325_R	0.664	0.29
120_I	253_D	0.663	0.29
276_A	386_D	0.662	0.29
192_A	264_F	0.661	0.29
190_G	244_E	0.661	0.29
344_F	395_L	0.660	0.28
209_P	227_T	0.660	0.28
224_V	230_W	0.655	0.28
76_A	94_R	0.655	0.28
186_T	244_E	0.654	0.28
343_A	365_T	0.653	0.28
265_P	298_P	0.652	0.28
75_L	362_G	0.652	0.28
195_R	373_G	0.652	0.28
98_T	138_N	0.650	0.28
187_H	389_G	0.649	0.28
177_Q	186_T	0.648	0.28
335_A	339_E	0.647	0.28
366_R	370_D	0.647	0.28
57_L	123_V	0.647	0.28
352_T	384_E	0.646	0.28
205_Y	272_F	0.645	0.28
206_L	269_Q	0.645	0.28
380_D	386_D	0.641	0.27
33_D	173_Y	0.641	0.27
75_L	86_V	0.640	0.27
132_F	135_L	0.636	0.27
157_A	160_L	0.636	0.27
218_Q	409_F	0.634	0.27
312_D	316_A	0.633	0.27
16_Y	22_G	0.633	0.27
139_A	209_P	0.630	0.27
93_D	96_A	0.629	0.27
98_T	278_S	0.628	0.27
76_A	83_R	0.627	0.27
284_I	364_I	0.626	0.26
231_T	339_E	0.625	0.26
304_V	391_R	0.624	0.26
108_D	275_A	0.623	0.26
223_Y	230_W	0.623	0.26
186_T	190_G	0.622	0.26
175_G	274_H	0.622	0.26
313_A	325_R	0.621	0.26
151_E	298_P	0.621	0.26
143_V	166_G	0.620	0.26
27_L	189_V	0.619	0.26
49_A	106_D	0.619	0.26
43_D	121_E	0.618	0.26
156_V	161_A	0.617	0.26
90_G	420_T	0.617	0.26
238_P	389_G	0.616	0.26
72_A	88_W	0.615	0.26
288_R	391_R	0.615	0.26
90_G	98_T	0.614	0.26
63_L	140_F	0.613	0.26
206_L	247_M	0.612	0.26
171_P	189_V	0.611	0.26
72_A	239_Q	0.611	0.26
175_G	288_R	0.611	0.26
160_L	409_F	0.610	0.26
185_V	221_R	0.609	0.25
218_Q	417_S	0.608	0.25
281_F	372_L	0.608	0.25
142_I	251_L	0.608	0.25
91_T	268_L	0.607	0.25
304_V	311_A	0.605	0.25
172_N	348_P	0.603	0.25
146_D	232_G	0.602	0.25
68_T	92_K	0.602	0.25
343_A	397_R	0.602	0.25
39_L	79_V	0.601	0.25
186_T	274_H	0.599	0.25
203_M	224_V	0.599	0.25
171_P	221_R	0.597	0.25
82_S	261_V	0.593	0.25
347_A	357_A	0.592	0.25
25_G	135_L	0.591	0.24
367_G	370_D	0.591	0.24
142_I	423_L	0.590	0.24
39_L	370_D	0.590	0.24
20_S	188_E	0.590	0.24
307_A	312_D	0.589	0.24
248_L	425_E	0.587	0.24
155_A	160_L	0.587	0.24
61_A	86_V	0.586	0.24
205_Y	243_Y	0.586	0.24
175_G	351_G	0.586	0.24
276_A	419_A	0.586	0.24
92_K	278_S	0.585	0.24
301_G	424_R	0.584	0.24
80_G	124_G	0.583	0.24
198_W	411_F	0.583	0.24
28_R	34_F	0.582	0.24
234_L	244_E	0.581	0.24
66_W	125_R	0.579	0.24
37_R	121_E	0.579	0.24
177_Q	274_H	0.578	0.24
63_L	138_N	0.576	0.24
117_N	337_H	0.575	0.24
30_S	35_R	0.573	0.24
62_T	65_E	0.573	0.24
16_Y	380_D	0.573	0.24
132_F	187_H	0.572	0.23
140_F	277_Q	0.571	0.23
76_A	97_V	0.571	0.23
211_E	304_V	0.571	0.23
93_D	418_Y	0.570	0.23
300_A	337_H	0.570	0.23
76_A	128_R	0.570	0.23
32_A	125_R	0.570	0.23
203_M	225_A	0.568	0.23
195_R	255_G	0.567	0.23
96_A	411_F	0.566	0.23
221_R	279_Y	0.565	0.23
120_I	134_D	0.563	0.23
44_T	193_I	0.562	0.23
354_T	395_L	0.561	0.23
296_G	395_L	0.558	0.23
360_D	363_E	0.557	0.23
63_L	177_Q	0.557	0.23
91_T	196_D	0.556	0.23
297_E	339_E	0.555	0.23
156_V	194_L	0.555	0.23
170_T	422_V	0.554	0.23
392_R	413_L	0.554	0.23
91_T	95_H	0.553	0.22
219_R	403_S	0.553	0.22
11_V	30_S	0.551	0.22
177_Q	271_L	0.550	0.22
29_D	281_F	0.550	0.22
89_A	92_K	0.547	0.22
185_V	343_A	0.546	0.22
25_G	238_P	0.545	0.22
215_A	219_R	0.545	0.22
199_E	254_G	0.543	0.22
133_G	274_H	0.543	0.22
34_F	180_G	0.543	0.22
15_Y	173_Y	0.542	0.22
16_Y	162_A	0.542	0.22
193_I	201_A	0.540	0.22
95_H	277_Q	0.540	0.22
413_L	420_T	0.539	0.22
34_F	92_K	0.538	0.22
109_A	122_V	0.538	0.22
40_E	76_A	0.537	0.22
244_E	274_H	0.537	0.22
27_L	423_L	0.536	0.22
91_T	266_S	0.536	0.22
244_E	278_S	0.536	0.22
34_F	138_N	0.535	0.22
106_D	196_D	0.535	0.22
80_G	146_D	0.535	0.22
27_L	225_A	0.535	0.22
341_G	416_G	0.534	0.22
167_T	309_S	0.532	0.21
244_E	277_Q	0.532	0.21
43_D	57_L	0.531	0.21
162_A	300_A	0.530	0.21
250_E	254_G	0.530	0.21
264_F	357_A	0.529	0.21
75_L	115_I	0.528	0.21
45_Q	273_V	0.527	0.21
219_R	223_Y	0.527	0.21
176_Q	372_L	0.527	0.21
145_R	409_F	0.527	0.21
30_S	260_A	0.525	0.21
326_V	334_M	0.524	0.21
147_P	171_P	0.523	0.21
180_G	244_E	0.522	0.21
117_N	255_G	0.522	0.21
212_H	216_D	0.521	0.21
329_S	334_M	0.521	0.21
198_W	372_L	0.520	0.21
173_Y	286_S	0.519	0.21
72_A	139_A	0.519	0.21
75_L	358_D	0.519	0.21
185_V	281_F	0.518	0.21
23_T	28_R	0.518	0.21
136_A	252_A	0.518	0.21
166_G	395_L	0.518	0.21
35_R	141_E	0.517	0.21
91_T	186_T	0.516	0.21
219_R	222_E	0.516	0.21
356_F	365_T	0.516	0.21
184_P	228_R	0.515	0.21
189_V	200_A	0.514	0.21
202_A	205_Y	0.513	0.20
105_R	163_F	0.513	0.20
261_V	265_P	0.513	0.20
75_L	87_R	0.511	0.20
251_L	303_V	0.509	0.20
47_A	50_P	0.508	0.20
257_F	412_A	0.508	0.20
177_Q	419_A	0.508	0.20
168_V	394_I	0.508	0.20
209_P	212_H	0.508	0.20
86_V	105_R	0.507	0.20
40_E	124_G	0.507	0.20
310_D	326_V	0.505	0.20
359_G	364_I	0.505	0.20
78_T	174_F	0.505	0.20
78_T	281_F	0.504	0.20
190_G	424_R	0.504	0.20
191_L	228_R	0.503	0.20
303_V	347_A	0.503	0.20
301_G	357_A	0.501	0.20
169_G	348_P	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1z2zA	1	0.9654	100	0.187	Contact Map
1szwA	1	0.7373	100	0.373	Contact Map
2mc5A	1	0.1659	60.2	0.971	Contact Map
1weyA	1	0.2373	16.4	0.979	Contact Map
2hr2A	4	0.2742	11	0.981	Contact Map
4bjqA	2	0.1774	8.8	0.981	Contact Map
2v9vA	1	0.265	7.3	0.982	Contact Map
1nu0A	1	0.1728	6.9	0.982	Contact Map
3ma5A	1	0.2005	6.3	0.983	Contact Map
3fflA	2	0.2281	5.8	0.983	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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