ADHS - HALSA - GREMLIN Contacts

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ADHS - 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase

UniProt:	Q9HSB8	Sequences: MTDAGKTARLNRISTDDRLLTIPMDHGITLGAIDGLVDIEATIREVTANGADAVLTQPGIAPRVHPNKGDAGYIVHLNASTTLGPDQTDKRRTGTVEDAVRAGADAVSFHINVGSDHEPDQITALADVAADADRLGVPVLAMAYARGPGVDEHDAANLGHAVRLAEEVGADVIKTAYSGSTESFQRVVDATAKPVIIAGGDPAGDRETLQGIRDAMDAGAAGVSTGRTVFQHATPGAMTAAISAVVHDDADPEAALARAGLVVDA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	265 (245)
Sequences:	1122 (652)
Seq/√Len:	41.7

ECOLI - LSRF ALF1
HALSA - ADHS ALF1
SULSO - Y3226

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
216_M	245_V	4.599	1.00
213_R	217_D	4.443	1.00
20_L	246_V	4.237	1.00
210_Q	214_D	4.041	1.00
215_A	220_A	3.322	1.00
132_A	139_V	3.280	1.00
172_V	196_I	3.238	1.00
143_A	165_A	3.080	1.00
225_T	242_I	2.927	1.00
129_A	139_V	2.923	1.00
18_R	221_A	2.753	1.00
106_A	138_P	2.690	1.00
206_R	210_Q	2.556	1.00
166_E	192_A	2.435	1.00
159_G	186_R	2.343	1.00
244_A	248_D	2.340	1.00
97_E	131_D	2.264	1.00
178_S	183_S	2.261	1.00
53_A	74_I	2.167	0.99
74_I	140_L	2.138	0.99
52_D	247_H	2.112	0.99
204_G	207_E	2.097	0.99
223_V	242_I	2.022	0.99
180_S	183_S	2.015	0.99
58_P	98_D	1.967	0.99
98_D	130_A	1.944	0.99
177_Y	184_F	1.938	0.99
108_S	142_M	1.927	0.99
109_F	125_L	1.899	0.99
100_V	137_V	1.881	0.99
18_R	216_M	1.876	0.99
155_A	159_G	1.868	0.98
97_E	134_R	1.859	0.98
21_T	196_I	1.807	0.98
229_V	242_I	1.796	0.98
76_H	142_M	1.753	0.98
158_L	178_S	1.737	0.98
212_I	242_I	1.712	0.97
125_L	141_A	1.706	0.97
203_A	208_T	1.697	0.97
38_D	41_A	1.646	0.97
94_G	98_D	1.631	0.96
186_R	189_D	1.610	0.96
76_H	108_S	1.602	0.96
208_T	238_M	1.599	0.96
97_E	135_L	1.560	0.95
51_A	239_T	1.554	0.95
163_R	167_E	1.532	0.95
209_L	245_V	1.531	0.95
76_H	144_Y	1.520	0.95
95_T	130_A	1.510	0.94
201_D	205_D	1.493	0.94
13_I	19_L	1.483	0.94
208_T	225_T	1.462	0.93
145_A	161_A	1.453	0.93
178_S	184_F	1.444	0.93
75_V	94_G	1.441	0.93
110_H	142_M	1.431	0.93
78_N	142_M	1.415	0.92
27_G	167_E	1.409	0.92
76_H	112_N	1.406	0.92
90_K	142_M	1.398	0.92
107_V	128_V	1.386	0.91
177_Y	214_D	1.386	0.91
92_R	128_V	1.382	0.91
79_A	93_T	1.377	0.91
113_V	164_L	1.358	0.90
115_S	121_Q	1.346	0.90
202_P	228_T	1.331	0.90
14_S	19_L	1.293	0.88
207_E	210_Q	1.292	0.88
197_I	215_A	1.284	0.88
162_V	175_T	1.277	0.88
76_H	110_H	1.265	0.87
208_T	212_I	1.258	0.87
234_T	237_A	1.254	0.87
77_L	128_V	1.241	0.86
90_K	112_N	1.211	0.85
209_L	241_A	1.209	0.84
56_T	102_A	1.204	0.84
5_G	9_R	1.197	0.84
61_A	73_Y	1.188	0.83
147_G	150_V	1.183	0.83
28_I	79_A	1.181	0.83
213_R	249_D	1.178	0.83
123_T	127_D	1.172	0.83
90_K	108_S	1.166	0.82
91_R	132_A	1.137	0.81
233_A	236_G	1.132	0.80
5_G	31_G	1.126	0.80
112_N	142_M	1.089	0.78
20_L	223_V	1.089	0.78
6_K	133_D	1.088	0.78
76_H	160_H	1.085	0.77
28_I	121_Q	1.083	0.77
108_S	144_Y	1.079	0.77
145_A	175_T	1.077	0.77
6_K	171_D	1.072	0.77
110_H	144_Y	1.069	0.76
92_R	124_A	1.066	0.76
92_R	125_L	1.064	0.76
182_E	185_Q	1.061	0.76
11_N	70_D	1.061	0.76
177_Y	215_A	1.059	0.76
90_K	110_H	1.057	0.76
112_N	230_F	1.056	0.75
55_L	142_M	1.055	0.75
62_P	133_D	1.054	0.75
216_M	220_A	1.046	0.75
41_A	45_E	1.040	0.74
76_H	90_K	1.032	0.74
78_N	108_S	1.029	0.74
228_T	231_Q	1.011	0.72
188_V	218_A	1.009	0.72
91_R	119_P	1.006	0.72
158_L	175_T	1.006	0.72
131_D	134_R	1.000	0.71
77_L	107_V	0.997	0.71
140_L	224_S	0.996	0.71
142_M	198_A	0.996	0.71
162_V	172_V	0.995	0.71
15_T	52_D	0.992	0.71
78_N	144_Y	0.991	0.71
40_E	44_R	0.985	0.70
212_I	225_T	0.980	0.70
29_T	108_S	0.980	0.70
108_S	112_N	0.976	0.69
19_L	196_I	0.975	0.69
77_L	96_V	0.974	0.69
90_K	160_H	0.973	0.69
29_T	76_H	0.971	0.69
117_H	121_Q	0.966	0.69
75_V	104_A	0.961	0.68
145_A	224_S	0.949	0.67
120_D	123_T	0.948	0.67
177_Y	220_A	0.941	0.67
105_D	138_P	0.941	0.67
36_L	163_R	0.937	0.66
45_E	236_G	0.935	0.66
107_V	171_D	0.933	0.66
78_N	110_H	0.931	0.66
20_L	239_T	0.931	0.66
135_L	139_V	0.926	0.65
78_N	111_I	0.922	0.65
13_I	53_A	0.921	0.65
46_V	49_N	0.915	0.64
144_Y	198_A	0.910	0.64
10_L	190_A	0.910	0.64
179_G	183_S	0.906	0.64
57_Q	76_H	0.903	0.63
55_L	108_S	0.900	0.63
44_R	245_V	0.898	0.63
141_A	165_A	0.897	0.63
15_T	66_P	0.896	0.63
203_A	211_G	0.894	0.63
86_D	115_S	0.891	0.62
5_G	10_L	0.890	0.62
27_G	163_R	0.884	0.62
22_I	46_V	0.881	0.61
236_G	245_V	0.877	0.61
18_R	249_D	0.864	0.60
29_T	142_M	0.861	0.60
21_T	53_A	0.852	0.59
151_D	161_A	0.849	0.59
57_Q	142_M	0.846	0.58
241_A	244_A	0.844	0.58
18_R	126_A	0.841	0.58
112_N	160_H	0.840	0.58
53_A	105_D	0.840	0.58
111_I	212_I	0.836	0.57
89_D	117_H	0.835	0.57
184_F	187_V	0.834	0.57
21_T	74_I	0.833	0.57
81_T	118_E	0.820	0.56
235_P	247_H	0.820	0.56
10_L	14_S	0.819	0.56
240_A	245_V	0.813	0.55
113_V	143_A	0.800	0.54
153_H	201_D	0.799	0.54
151_D	154_D	0.799	0.54
9_R	138_P	0.797	0.54
20_L	243_S	0.795	0.54
165_A	173_I	0.794	0.54
12_R	53_A	0.792	0.53
142_M	160_H	0.788	0.53
48_A	236_G	0.787	0.53
10_L	134_R	0.783	0.52
112_N	121_Q	0.767	0.51
116_D	148_P	0.766	0.51
74_I	150_V	0.765	0.51
118_E	122_I	0.764	0.51
30_L	115_S	0.763	0.51
19_L	52_D	0.760	0.50
14_S	172_V	0.758	0.50
158_L	187_V	0.756	0.50
159_G	190_A	0.754	0.50
58_P	94_G	0.753	0.50
101_R	134_R	0.748	0.49
39_I	43_I	0.741	0.49
96_V	137_V	0.737	0.48
152_E	157_N	0.736	0.48
178_S	187_V	0.735	0.48
49_N	239_T	0.733	0.48
109_F	129_A	0.733	0.48
75_V	205_D	0.732	0.48
94_G	130_A	0.729	0.47
24_M	39_I	0.728	0.47
162_V	187_V	0.727	0.47
141_A	170_A	0.723	0.47
185_Q	189_D	0.718	0.46
6_K	9_R	0.712	0.46
61_A	75_V	0.710	0.46
105_D	179_G	0.709	0.46
29_T	90_K	0.709	0.46
11_N	66_P	0.707	0.45
44_R	48_A	0.707	0.45
13_I	140_L	0.702	0.45
29_T	112_N	0.700	0.45
10_L	13_I	0.699	0.45
197_I	211_G	0.698	0.45
32_A	230_F	0.688	0.44
57_Q	144_Y	0.688	0.44
209_L	238_M	0.686	0.43
90_K	230_F	0.684	0.43
217_D	245_V	0.681	0.43
96_V	107_V	0.681	0.43
106_A	164_L	0.681	0.43
110_H	160_H	0.678	0.43
112_N	144_Y	0.675	0.42
29_T	110_H	0.673	0.42
96_V	128_V	0.672	0.42
76_H	198_A	0.668	0.42
152_E	176_A	0.667	0.42
175_T	187_V	0.666	0.42
47_T	61_A	0.666	0.42
14_S	234_T	0.664	0.41
127_D	240_A	0.661	0.41
10_L	19_L	0.655	0.41
28_I	78_N	0.654	0.41
26_H	33_I	0.653	0.40
78_N	90_K	0.653	0.40
57_Q	108_S	0.652	0.40
203_A	207_E	0.651	0.40
179_G	182_E	0.651	0.40
209_L	228_T	0.650	0.40
196_I	242_I	0.648	0.40
106_A	217_D	0.648	0.40
210_Q	236_G	0.648	0.40
43_I	56_T	0.647	0.40
23_P	142_M	0.647	0.40
165_A	169_G	0.645	0.40
110_H	170_A	0.640	0.39
8_A	61_A	0.640	0.39
152_E	230_F	0.639	0.39
27_G	32_A	0.639	0.39
35_G	163_R	0.638	0.39
6_K	13_I	0.637	0.39
46_V	239_T	0.637	0.39
37_V	186_R	0.637	0.39
21_T	212_I	0.635	0.39
114_G	147_G	0.634	0.39
62_P	193_K	0.634	0.39
78_N	198_A	0.634	0.39
110_H	121_Q	0.632	0.39
98_D	101_R	0.630	0.38
43_I	102_A	0.627	0.38
41_A	44_R	0.627	0.38
174_K	227_R	0.625	0.38
23_P	76_H	0.623	0.38
196_I	221_A	0.622	0.38
115_S	175_T	0.621	0.38
56_T	61_A	0.621	0.38
113_V	161_A	0.620	0.38
154_D	157_N	0.617	0.37
107_V	132_A	0.615	0.37
123_T	233_A	0.614	0.37
13_I	74_I	0.613	0.37
176_A	198_A	0.611	0.37
153_H	175_T	0.611	0.37
209_L	229_V	0.610	0.37
73_Y	104_A	0.610	0.37
111_I	141_A	0.610	0.37
184_F	220_A	0.606	0.36
206_R	209_L	0.606	0.36
72_G	105_D	0.606	0.36
9_R	12_R	0.605	0.36
130_A	133_D	0.605	0.36
115_S	146_R	0.601	0.36
113_V	192_A	0.600	0.36
184_F	197_I	0.598	0.36
177_Y	197_I	0.598	0.36
204_G	233_A	0.597	0.36
23_P	80_S	0.597	0.36
111_I	131_D	0.596	0.35
80_S	230_F	0.594	0.35
63_R	191_T	0.593	0.35
209_L	249_D	0.588	0.35
207_E	214_D	0.588	0.35
29_T	35_G	0.579	0.34
115_S	224_S	0.579	0.34
180_S	214_D	0.576	0.34
10_L	127_D	0.575	0.34
166_E	193_K	0.573	0.33
138_P	230_F	0.573	0.33
196_I	224_S	0.571	0.33
91_R	123_T	0.571	0.33
209_L	232_H	0.568	0.33
80_S	90_K	0.568	0.33
79_A	112_N	0.566	0.33
121_Q	144_Y	0.564	0.33
100_V	131_D	0.563	0.33
105_D	171_D	0.562	0.33
27_G	231_Q	0.559	0.32
110_H	230_F	0.558	0.32
150_V	158_L	0.558	0.32
48_A	69_G	0.556	0.32
34_D	238_M	0.556	0.32
184_F	188_V	0.556	0.32
125_L	140_L	0.553	0.32
43_I	64_V	0.550	0.32
151_D	157_N	0.550	0.32
216_M	246_V	0.549	0.32
76_H	121_Q	0.549	0.32
130_A	134_R	0.546	0.31
23_P	90_K	0.543	0.31
200_G	227_R	0.543	0.31
188_V	225_T	0.542	0.31
39_I	206_R	0.537	0.31
166_E	173_I	0.537	0.31
66_P	69_G	0.536	0.30
143_A	225_T	0.536	0.30
144_Y	160_H	0.532	0.30
58_P	126_A	0.532	0.30
57_Q	90_K	0.531	0.30
161_A	176_A	0.531	0.30
137_V	186_R	0.530	0.30
32_A	73_Y	0.530	0.30
96_V	135_L	0.530	0.30
22_I	51_A	0.529	0.30
199_G	227_R	0.528	0.30
47_T	60_I	0.528	0.30
29_T	144_Y	0.527	0.30
72_G	108_S	0.522	0.29
73_Y	106_A	0.520	0.29
172_V	242_I	0.518	0.29
142_M	230_F	0.518	0.29
188_V	191_T	0.515	0.29
95_T	218_A	0.515	0.29
50_G	72_G	0.514	0.29
214_D	240_A	0.513	0.29
58_P	108_S	0.513	0.29
233_A	237_A	0.512	0.29
207_E	211_G	0.511	0.29
204_G	249_D	0.510	0.28
56_T	152_E	0.509	0.28
48_A	210_Q	0.509	0.28
30_L	112_N	0.507	0.28
24_M	54_V	0.506	0.28
210_Q	213_R	0.505	0.28
109_F	124_A	0.505	0.28
162_V	202_P	0.505	0.28
42_T	133_D	0.504	0.28
214_D	220_A	0.504	0.28
11_N	68_K	0.502	0.28
213_R	216_M	0.502	0.28
175_T	184_F	0.502	0.28
32_A	187_V	0.500	0.28
43_I	131_D	0.500	0.28

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3fokA	3	0.9019	100	0.34	Contact Map
3iv3A	2	0.9698	100	0.397	Contact Map
4mozA	5	1	100	0.401	Contact Map
1to3A	2	0.9547	100	0.433	Contact Map
3glcA	6	0.9547	100	0.479	Contact Map
1w8sA	4	0.917	100	0.523	Contact Map
2qjgA	6	0.9849	100	0.547	Contact Map
3oa3A	2	0.8302	100	0.656	Contact Map
3r12A	2	0.8302	100	0.661	Contact Map
3ndoA	2	0.7962	100	0.667	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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