GREMLIN Database
Q9HS23 - Ferredoxin
UniProt: Q9HS23 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 109 (91)
Sequences: 1331 (700)
Seq/√Len: 73.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
54_D80_Q4.1961.00
86_D89_K3.1821.00
21_E29_R2.7131.00
6_V17_V2.6051.00
72_A77_A2.3191.00
36_Y39_R2.3111.00
52_S84_V2.2941.00
5_T16_E2.2531.00
5_T14_T2.2111.00
23_I83_L2.1611.00
50_I83_L2.1571.00
48_A74_T2.1331.00
47_S67_E2.0881.00
7_E12_G2.0411.00
37_S40_V1.9251.00
26_A30_E1.9031.00
28_L39_R1.8721.00
50_I72_A1.8531.00
48_A85_L1.8041.00
49_K71_Y1.6601.00
22_T25_K1.5790.99
9_A12_G1.4600.99
65_D69_D1.4480.99
8_F15_I1.3850.98
4_Y81_T1.3850.98
7_E14_T1.3760.98
20_T78_R1.3560.98
55_V77_A1.3040.98
21_E26_A1.2600.97
54_D81_T1.2480.97
11_A86_D1.2140.96
89_K92_P1.2100.96
37_S44_L1.1880.96
9_A84_V1.1590.95
64_T67_E1.1170.94
15_I27_C1.1090.94
18_S21_E1.1030.94
17_V79_P1.1000.94
51_E84_V1.0850.93
24_L36_Y1.0680.93
56_T80_Q1.0520.92
7_E84_V1.0280.91
42_M61_R1.0250.91
42_M48_A1.0120.90
37_S42_M0.9970.90
37_S62_G0.9570.88
44_L62_G0.9470.87
6_V26_A0.9390.87
16_E52_S0.9370.87
6_V27_C0.9370.87
57_Q76_M0.9260.86
29_R33_A0.8900.84
57_Q72_A0.8900.84
53_G81_T0.8680.82
44_L47_S0.8670.82
24_L39_R0.8660.82
12_G84_V0.8600.82
11_A36_Y0.8510.81
17_V26_A0.8430.80
52_S82_D0.8310.79
13_E30_E0.8300.79
33_A76_M0.8170.78
55_V60_A0.8160.78
11_A89_K0.8020.77
51_E86_D0.7990.77
19_D52_S0.7850.75
3_E13_E0.7840.75
3_E18_S0.7760.74
36_Y63_L0.7670.74
8_F87_R0.7540.72
59_A78_R0.7480.72
36_Y89_K0.7320.70
9_A51_E0.7270.70
55_V72_A0.6940.66
59_A70_E0.6890.65
22_T39_R0.6840.65
31_G51_E0.6820.65
71_Y89_K0.6810.65
40_V89_K0.6750.64
36_Y40_V0.6740.64
63_L77_A0.6660.63
50_I57_Q0.6630.62
11_A49_K0.6610.62
14_T85_L0.6530.61
38_C43_C0.6530.61
44_L67_E0.6510.61
57_Q68_A0.6360.59
61_R67_E0.6270.58
19_D23_I0.6160.57
60_A68_A0.6140.57
15_I26_A0.6140.57
66_A70_E0.6120.56
28_L36_Y0.6110.56
45_A71_Y0.5990.55
71_Y76_M0.5930.54
8_F86_D0.5890.54
22_T28_L0.5880.53
37_S73_L0.5880.53
7_E10_G0.5830.53
16_E70_E0.5810.53
32_I77_A0.5780.52
60_A65_D0.5730.52
33_A37_S0.5700.51
32_I87_R0.5690.51
34_Q45_A0.5680.51
66_A69_D0.5660.51
77_A86_D0.5610.50
43_C46_C0.5590.50
26_A73_L0.5530.49
40_V62_G0.5490.49
49_K70_E0.5450.48
35_E90_Y0.5440.48
23_I74_T0.5430.48
32_I52_S0.5400.47
11_A14_T0.5400.47
26_A29_R0.5380.47
60_A76_M0.5380.47
25_K39_R0.5370.47
4_Y35_E0.5360.47
55_V74_T0.5330.47
40_V48_A0.5320.46
74_T85_L0.5320.46
40_V88_G0.5290.46
3_E31_G0.5270.46
33_A64_T0.5270.46
90_Y93_S0.5250.46
8_F88_G0.5240.46
37_S64_T0.5170.45
35_E88_G0.5170.45
21_E50_I0.5140.44
42_M67_E0.5140.44
5_T70_E0.5130.44
27_C34_Q0.5120.44
67_E93_S0.5030.43
62_G76_M0.5010.43
47_S76_M0.5000.43
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zyyX 2 0.9817 99.9 0.447 Contact Map
4n58A 4 0.9817 99.9 0.452 Contact Map
1iueA 1 0.8716 99.9 0.48 Contact Map
1frrA 1 0.844 99.9 0.48 Contact Map
1qoaA 1 0.8532 99.9 0.484 Contact Map
1awdA 2 0.8349 99.8 0.485 Contact Map
1frdA 1 0.8532 99.8 0.487 Contact Map
2piaA 1 0.789 99.8 0.488 Contact Map
1wriA 1 0.8257 99.8 0.49 Contact Map
3wcqA 1 0.844 99.8 0.493 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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