Q9HRZ6 - HALSA - GREMLIN Contacts

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Q9HRZ6 - Pyruvate ferredoxin oxidoreductase, subunit beta

UniProt:	Q9HRZ6	Sequences: MSSENVRFTDFKSDKQPTWCPGCGDFGTMNGMMKALAETGNSPDDTFVVAGIGCSGKIGTYMRSYALHGVHGRALPVGTGVKLANPDLEVMVAGGDGDGYSIGAGHFIHAVRRNVDITYVVMDNRIYGLTKGQASPTSRSDFETSTSPDGPKQPPVNPLALAMAAGGSFIAQSFSSDALRHQEIVQEAIEHDGFSLVNTFSPCVTFNDVDTYDYFRDSLVDLSEDDDYDRHDYDQAKDAILDAGKEYLGVLYQDEDSTPYSEAHGVTENMAELPDGAPDGATDLVREFY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	289 (254)
Sequences:	2794 (1473)
Seq/√Len:	92.4

ECOLI - NIFJ
HALSA - Q9HRZ6 F2Z6I7
SULSO - Q97V20 Q97V79 Q97YV0 Q7LX68

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
116_D	192_D	5.016	1.00
118_T	195_S	4.467	1.00
188_A	197_V	3.663	1.00
173_S	181_H	3.626	1.00
47_F	81_V	3.289	1.00
121_V	196_L	3.180	1.00
173_S	184_I	3.073	1.00
120_V	199_T	2.582	1.00
110_A	117_I	2.433	1.00
186_Q	190_E	2.430	1.00
138_S	142_F	2.317	1.00
94_G	119_Y	2.286	1.00
213_D	216_R	2.208	1.00
123_D	198_N	2.138	1.00
85_N	88_L	2.131	1.00
119_Y	194_F	2.109	1.00
111_V	162_A	2.105	1.00
74_A	92_V	2.079	1.00
168_S	191_H	2.078	1.00
45_D	87_D	2.077	1.00
92_V	117_I	2.073	1.00
157_N	160_A	2.063	1.00
187_E	250_V	2.061	1.00
91_M	189_I	2.049	1.00
172_Q	198_N	2.012	1.00
233_Y	236_A	1.976	1.00
78_G	92_V	1.949	1.00
107_F	162_A	1.943	1.00
49_V	81_V	1.938	1.00
25_D	122_M	1.917	1.00
180_R	184_I	1.907	1.00
192_D	262_E	1.897	1.00
111_V	194_F	1.808	1.00
249_G	269_N	1.806	1.00
32_M	185_V	1.793	1.00
269_N	273_L	1.769	1.00
94_G	99_G	1.764	1.00
56_G	59_G	1.748	1.00
120_V	185_V	1.748	1.00
180_R	248_L	1.743	1.00
30_N	34_K	1.732	1.00
32_M	93_A	1.719	1.00
185_V	197_V	1.670	1.00
187_E	253_Q	1.668	1.00
250_V	253_Q	1.639	1.00
99_G	119_Y	1.631	1.00
121_V	158_P	1.620	1.00
169_F	250_V	1.615	1.00
224_E	246_E	1.575	1.00
28_T	201_S	1.539	1.00
29_M	93_A	1.539	1.00
29_M	58_I	1.493	1.00
46_T	89_E	1.493	1.00
266_V	269_N	1.486	1.00
69_G	77_V	1.478	1.00
118_T	189_I	1.472	1.00
78_G	90_V	1.469	1.00
217_D	254_D	1.447	1.00
100_Y	121_V	1.443	0.99
49_V	78_G	1.432	0.99
99_G	121_V	1.414	0.99
91_M	118_T	1.395	0.99
208_D	256_D	1.395	0.99
270_M	273_L	1.387	0.99
183_E	186_Q	1.378	0.99
232_D	236_A	1.376	0.99
162_A	196_L	1.370	0.99
181_H	199_T	1.352	0.99
182_Q	186_Q	1.339	0.99
267_T	270_M	1.325	0.99
191_H	195_S	1.324	0.99
152_K	267_T	1.321	0.99
49_V	92_V	1.321	0.99
181_H	185_V	1.319	0.99
47_F	88_L	1.315	0.99
173_S	180_R	1.313	0.99
140_S	154_P	1.295	0.99
171_A	184_I	1.292	0.99
75_L	119_Y	1.289	0.99
234_D	238_D	1.277	0.99
67_L	77_V	1.274	0.99
270_M	274_P	1.271	0.99
239_A	242_D	1.253	0.99
169_F	187_E	1.248	0.99
187_E	190_E	1.239	0.98
47_F	90_V	1.234	0.98
268_E	272_E	1.231	0.98
34_K	182_Q	1.227	0.98
32_M	120_V	1.225	0.98
108_I	161_L	1.224	0.98
139_R	142_F	1.221	0.98
263_A	266_V	1.219	0.98
29_M	122_M	1.217	0.98
214_Y	218_S	1.202	0.98
125_R	155_P	1.195	0.98
223_S	226_D	1.193	0.98
159_L	170_I	1.188	0.98
260_Y	263_A	1.169	0.98
45_D	89_E	1.166	0.98
79_T	115_V	1.151	0.97
124_N	128_G	1.151	0.97
89_E	189_I	1.149	0.97
32_M	58_I	1.143	0.97
108_I	156_V	1.139	0.97
123_D	155_P	1.135	0.97
264_H	267_T	1.127	0.97
75_L	110_A	1.126	0.97
167_G	170_I	1.108	0.97
160_A	163_M	1.107	0.97
57_K	60_T	1.102	0.97
100_Y	158_P	1.100	0.97
244_G	247_Y	1.099	0.97
161_L	164_A	1.096	0.97
82_K	115_V	1.084	0.96
36_L	46_T	1.076	0.96
202_P	214_Y	1.065	0.96
36_L	189_I	1.065	0.96
269_N	272_E	1.063	0.96
233_Y	237_K	1.056	0.96
93_A	122_M	1.053	0.96
28_T	199_T	1.052	0.96
29_M	33_M	1.049	0.96
50_A	66_A	1.046	0.96
159_L	196_L	1.044	0.96
144_T	147_S	1.040	0.95
105_G	108_I	1.037	0.95
184_I	250_V	1.034	0.95
212_Y	216_R	1.028	0.95
56_G	68_H	1.027	0.95
173_S	185_V	1.023	0.95
234_D	237_K	1.018	0.95
249_G	253_Q	1.016	0.95
52_I	68_H	1.015	0.95
183_E	187_E	1.010	0.95
174_F	222_L	1.010	0.95
237_K	241_L	1.006	0.95
210_D	214_Y	1.005	0.94
122_M	201_S	0.995	0.94
50_A	59_G	0.989	0.94
174_F	200_F	0.984	0.94
52_I	57_K	0.980	0.94
82_K	116_D	0.976	0.94
231_H	235_Q	0.970	0.93
114_N	194_F	0.963	0.93
174_F	218_S	0.955	0.93
57_K	61_Y	0.940	0.92
232_D	235_Q	0.937	0.92
159_L	172_Q	0.934	0.92
233_Y	238_D	0.924	0.92
32_M	91_M	0.922	0.91
259_P	263_A	0.921	0.91
27_G	30_N	0.916	0.91
118_T	188_A	0.914	0.91
238_D	241_L	0.914	0.91
254_D	257_S	0.910	0.91
118_T	185_V	0.906	0.91
100_Y	137_T	0.897	0.90
81_V	90_V	0.893	0.90
210_D	213_D	0.893	0.90
19_W	26_F	0.891	0.90
89_E	116_D	0.888	0.90
177_D	221_D	0.886	0.90
162_A	170_I	0.884	0.90
55_S	122_M	0.879	0.89
158_P	196_L	0.877	0.89
219_L	222_L	0.874	0.89
79_T	113_R	0.862	0.89
107_F	196_L	0.861	0.88
104_A	108_I	0.861	0.88
83_L	115_V	0.856	0.88
58_I	122_M	0.854	0.88
226_D	229_D	0.848	0.88
110_A	194_F	0.847	0.88
217_D	220_V	0.847	0.88
265_G	268_E	0.845	0.88
266_V	270_M	0.844	0.87
125_R	139_R	0.842	0.87
175_S	181_H	0.840	0.87
126_I	205_T	0.833	0.87
18_T	60_T	0.832	0.87
28_T	122_M	0.830	0.87
80_G	84_A	0.822	0.86
219_L	223_S	0.822	0.86
259_P	262_E	0.819	0.86
52_I	56_G	0.815	0.86
56_G	60_T	0.814	0.85
247_Y	250_V	0.812	0.85
173_S	199_T	0.810	0.85
225_D	229_D	0.809	0.85
161_L	165_A	0.804	0.85
232_D	237_K	0.803	0.85
155_P	172_Q	0.797	0.84
225_D	245_K	0.796	0.84
220_V	254_D	0.794	0.84
230_R	233_Y	0.789	0.84
52_I	73_R	0.788	0.84
235_Q	238_D	0.782	0.83
57_K	68_H	0.777	0.83
209_V	214_Y	0.773	0.82
31_G	178_A	0.773	0.82
260_Y	268_E	0.769	0.82
163_M	170_I	0.768	0.82
54_C	102_I	0.765	0.82
175_S	215_F	0.765	0.82
37_A	44_D	0.763	0.82
36_L	91_M	0.762	0.82
52_I	66_A	0.760	0.81
240_I	243_A	0.758	0.81
82_K	90_V	0.757	0.81
120_V	197_V	0.749	0.80
17_P	26_F	0.749	0.80
108_I	165_A	0.748	0.80
126_I	142_F	0.748	0.80
56_G	73_R	0.748	0.80
214_Y	217_D	0.744	0.80
248_L	252_Y	0.741	0.80
32_M	48_V	0.741	0.80
249_G	252_Y	0.739	0.80
118_T	197_V	0.737	0.79
249_G	261_S	0.737	0.79
211_T	214_Y	0.733	0.79
74_A	94_G	0.729	0.79
78_G	117_I	0.727	0.78
107_F	111_V	0.727	0.78
256_D	259_P	0.727	0.78
19_W	58_I	0.724	0.78
111_V	196_L	0.724	0.78
233_Y	241_L	0.717	0.77
211_T	215_F	0.716	0.77
74_A	98_D	0.715	0.77
264_H	272_E	0.708	0.77
207_N	210_D	0.706	0.76
223_S	227_D	0.700	0.76
15_K	18_T	0.700	0.76
57_K	101_S	0.696	0.75
175_S	202_P	0.696	0.75
225_D	228_Y	0.695	0.75
107_F	163_M	0.692	0.75
222_L	225_D	0.688	0.74
223_S	245_K	0.688	0.74
138_S	144_T	0.686	0.74
97_G	135_S	0.684	0.74
261_S	265_G	0.681	0.74
265_G	269_N	0.681	0.74
249_G	262_E	0.675	0.73
159_L	251_L	0.675	0.73
163_M	237_K	0.675	0.73
215_F	218_S	0.670	0.73
67_L	81_V	0.666	0.72
25_D	201_S	0.664	0.72
221_D	251_L	0.664	0.72
125_R	142_F	0.661	0.72
222_L	229_D	0.660	0.71
180_R	247_Y	0.659	0.71
138_S	150_G	0.659	0.71
221_D	227_D	0.659	0.71
184_I	197_V	0.655	0.71
262_E	265_G	0.655	0.71
239_A	243_A	0.655	0.71
230_R	235_Q	0.653	0.71
32_M	46_T	0.652	0.70
134_A	147_S	0.651	0.70
232_D	240_I	0.647	0.70
49_V	74_A	0.644	0.70
221_D	248_L	0.641	0.69
48_V	64_S	0.641	0.69
216_R	223_S	0.641	0.69
100_Y	198_N	0.640	0.69
107_F	119_Y	0.640	0.69
20_C	23_C	0.638	0.69
166_G	170_I	0.637	0.69
70_V	73_R	0.636	0.69
230_R	236_A	0.632	0.68
220_V	245_K	0.631	0.68
59_G	68_H	0.627	0.68
100_Y	196_L	0.627	0.68
200_F	246_E	0.627	0.68
48_V	62_M	0.625	0.67
236_A	240_I	0.624	0.67
75_L	99_G	0.622	0.67
132_G	143_E	0.622	0.67
75_L	106_H	0.621	0.67
125_R	138_S	0.620	0.67
50_A	60_T	0.618	0.66
27_G	31_G	0.617	0.66
17_P	68_H	0.611	0.66
267_T	271_A	0.611	0.66
49_V	90_V	0.610	0.65
216_R	222_L	0.609	0.65
69_G	73_R	0.609	0.65
262_E	266_V	0.606	0.65
265_G	273_L	0.606	0.65
253_Q	261_S	0.606	0.65
55_S	201_S	0.604	0.65
226_D	248_L	0.594	0.63
263_A	270_M	0.591	0.63
71_H	102_I	0.590	0.63
83_L	166_G	0.589	0.63
246_E	250_V	0.589	0.63
243_A	246_E	0.587	0.62
217_D	255_E	0.586	0.62
169_F	191_H	0.585	0.62
81_V	85_N	0.581	0.62
160_A	164_A	0.580	0.62
97_G	127_Y	0.579	0.61
224_E	247_Y	0.579	0.61
177_D	180_R	0.577	0.61
48_V	81_V	0.575	0.61
262_E	271_A	0.573	0.61
265_G	272_E	0.573	0.61
79_T	110_A	0.571	0.60
169_F	251_L	0.571	0.60
53_G	73_R	0.569	0.60
102_I	105_G	0.569	0.60
70_V	101_S	0.567	0.60
230_R	238_D	0.567	0.60
206_F	210_D	0.567	0.60
51_G	98_D	0.565	0.60
149_D	152_K	0.561	0.59
54_C	203_C	0.560	0.59
49_V	77_V	0.559	0.59
264_H	268_E	0.556	0.58
114_N	167_G	0.556	0.58
94_G	98_D	0.555	0.58
74_A	137_T	0.554	0.58
18_T	68_H	0.553	0.58
153_Q	167_G	0.552	0.58
36_L	64_S	0.552	0.58
247_Y	251_L	0.551	0.58
237_K	242_D	0.550	0.57
89_E	92_V	0.550	0.57
253_Q	256_D	0.550	0.57
31_G	34_K	0.546	0.57
58_I	93_A	0.545	0.57
25_D	102_I	0.545	0.57
149_D	267_T	0.545	0.57
35_A	183_E	0.542	0.56
254_D	258_T	0.542	0.56
52_I	71_H	0.541	0.56
70_V	77_V	0.540	0.56
50_A	53_G	0.539	0.56
264_H	271_A	0.539	0.56
98_D	109_H	0.537	0.56
216_R	220_V	0.537	0.56
50_A	56_G	0.535	0.55
101_S	136_P	0.534	0.55
179_L	182_Q	0.534	0.55
114_N	153_Q	0.533	0.55
252_Y	258_T	0.533	0.55
158_P	170_I	0.533	0.55
17_P	30_N	0.531	0.55
156_V	165_A	0.530	0.55
211_T	218_S	0.529	0.55
92_V	119_Y	0.529	0.55
18_T	57_K	0.528	0.54
221_D	224_E	0.528	0.54
134_A	137_T	0.528	0.54
104_A	109_H	0.528	0.54
112_R	134_A	0.527	0.54
200_F	226_D	0.526	0.54
120_V	188_A	0.523	0.54
238_D	242_D	0.523	0.54
113_R	167_G	0.523	0.54
170_I	196_L	0.520	0.53
75_L	121_V	0.518	0.53
123_D	172_Q	0.517	0.53
50_A	55_S	0.517	0.53
89_E	118_T	0.515	0.53
24_G	27_G	0.515	0.53
231_H	240_I	0.513	0.52
62_M	82_K	0.511	0.52
150_G	155_P	0.511	0.52
220_V	246_E	0.508	0.52
27_G	175_S	0.505	0.51
261_S	264_H	0.503	0.51
31_G	182_Q	0.503	0.51
182_Q	190_E	0.503	0.51
176_S	202_P	0.501	0.51
231_H	234_D	0.500	0.51
231_H	236_A	0.500	0.51
140_S	143_E	0.500	0.51

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2c42A	2	0.9792	100	0.439	Contact Map
5c4iC	2	0.9654	100	0.537	Contact Map
4kgdA	4	0.8131	99.9	0.744	Contact Map
1v5eA	4	0.8166	99.9	0.755	Contact Map
2panA	3	0.8062	99.9	0.759	Contact Map
1ybhA	4	0.7509	99.9	0.761	Contact Map
4rjjA	5	0.7163	99.9	0.772	Contact Map
2pgnA	4	0.7751	99.9	0.772	Contact Map
1ozhA	4	0.699	99.9	0.775	Contact Map
1t9bA	2	0.782	99.9	0.775	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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