Q9HRY6 - HALSA - GREMLIN Contacts

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Q9HRY6 - Probable acetyltransferase

UniProt:	Q9HRY6	Sequences: MPGPIVTEGDRVTLRTVERDDAAHLQRSCTDPRIRHSLGSVHHRSREQQADGIEHWVEDDGSVVAVVCVDDEDAPPGQPAADETTPIGSFSARHVDSDRAWLAYWLRPEYTGSGYGRDMATTGIDYVFAQYGVHNVSAAAYDFNEASRGLLAAMGFTEVGRRREARYIDGGYADEVWYDVLRREWTADRER	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	191 (167)
Sequences:	18287 (13947)
Seq/√Len:	1079.3

ECOLI - RIMJ ATDA RIML YHHY MNAT
BACSU - YJCK YOKL YDAF YNAD YOAA YKKB YJDG YWNH
HALSA - Q9HRY6 Q9HRY5 Q9HMZ2 Q9HNJ3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
138_A	151_L	2.781	1.00
117_R	153_A	2.680	1.00
15_R	68_C	2.635	1.00
15_R	21_D	2.451	1.00
159_V	179_D	2.363	1.00
100_A	133_V	2.228	1.00
33_R	108_P	2.224	1.00
164_E	183_R	2.215	1.00
11_R	118_D	2.191	1.00
69_V	83_E	2.161	1.00
92_A	127_V	2.124	1.00
158_E	161_R	2.109	1.00
140_A	148_R	2.108	1.00
158_E	176_V	2.082	1.00
9_G	122_T	1.997	1.00
140_A	151_L	1.969	1.00
8_E	70_D	1.969	1.00
149_G	152_A	1.943	1.00
9_G	118_D	1.932	1.00
148_R	152_A	1.867	1.00
125_D	129_A	1.852	1.00
102_L	120_A	1.749	1.00
31_D	108_P	1.734	1.00
124_I	156_F	1.732	1.00
23_A	46_R	1.725	1.00
124_I	136_V	1.722	1.00
161_R	176_V	1.703	1.00
134_H	164_E	1.680	1.00
66_V	86_P	1.678	1.00
148_R	158_E	1.647	1.00
46_R	50_A	1.583	1.00
148_R	176_V	1.557	1.00
24_H	86_P	1.554	1.00
142_D	174_D	1.541	1.00
17_V	66_V	1.539	1.00
120_A	154_M	1.521	1.00
167_Y	172_Y	1.506	1.00
107_R	110_Y	1.498	1.00
19_R	54_E	1.497	1.00
22_A	50_A	1.490	1.00
45_S	48_Q	1.484	1.00
152_A	158_E	1.482	1.00
106_L	116_G	1.463	1.00
90_F	119_M	1.458	1.00
122_T	125_D	1.454	1.00
52_G	56_W	1.418	1.00
68_C	84_T	1.411	1.00
13_T	70_D	1.351	1.00
7_T	122_T	1.348	1.00
145_E	148_R	1.306	1.00
135_N	179_D	1.298	1.00
148_R	178_Y	1.291	1.00
90_F	123_G	1.286	1.00
134_H	172_Y	1.281	1.00
117_R	150_L	1.276	1.00
127_V	136_V	1.260	1.00
165_A	175_E	1.251	1.00
24_H	85_T	1.239	1.00
162_R	177_W	1.226	1.00
8_E	13_T	1.221	1.00
67_V	119_M	1.215	1.00
87_I	110_Y	1.212	1.00
69_V	87_I	1.211	1.00
104_Y	151_L	1.192	1.00
143_F	173_A	1.178	1.00
67_V	106_L	1.178	1.00
142_D	161_R	1.160	1.00
126_Y	130_Q	1.127	1.00
116_G	150_L	1.113	1.00
13_T	68_C	1.103	1.00
22_A	53_I	1.084	1.00
69_V	115_Y	1.081	1.00
28_S	105_W	1.075	1.00
140_A	178_Y	1.070	1.00
28_S	107_R	1.070	1.00
111_T	146_A	1.070	1.00
104_Y	147_S	1.067	1.00
85_T	110_Y	1.061	1.00
9_G	12_V	1.060	1.00
101_W	139_A	1.058	1.00
89_S	105_W	1.056	1.00
34_I	111_T	1.054	1.00
147_S	151_L	1.053	1.00
127_V	131_Y	1.045	1.00
85_T	109_E	1.034	1.00
158_E	178_Y	1.031	1.00
33_R	36_H	1.022	1.00
135_N	159_V	1.018	1.00
124_I	180_V	1.017	1.00
161_R	174_D	1.010	1.00
22_A	46_R	1.007	1.00
26_Q	46_R	1.006	1.00
7_T	126_Y	1.002	1.00
126_Y	131_Y	0.996	1.00
134_H	182_R	0.995	1.00
7_T	14_L	0.995	1.00
24_H	27_R	0.984	1.00
99_R	137_S	0.981	1.00
44_R	48_Q	0.976	1.00
19_R	50_A	0.974	1.00
164_E	174_D	0.965	1.00
50_A	54_E	0.958	1.00
65_A	123_G	0.951	1.00
108_P	111_T	0.944	1.00
151_L	156_F	0.942	1.00
6_V	13_T	0.938	1.00
51_D	55_H	0.933	1.00
150_L	154_M	0.933	1.00
138_A	156_F	0.931	1.00
141_Y	173_A	0.925	1.00
65_A	126_Y	0.914	1.00
163_R	179_D	0.909	1.00
43_H	49_Q	0.905	1.00
163_R	174_D	0.904	1.00
92_A	123_G	0.893	1.00
124_I	154_M	0.892	1.00
117_R	121_T	0.891	1.00
156_F	180_V	0.891	1.00
71_D	83_E	0.889	1.00
142_D	176_V	0.879	1.00
121_T	125_D	0.876	1.00
127_V	133_V	0.868	1.00
17_V	89_S	0.862	1.00
69_V	85_T	0.854	1.00
99_R	165_A	0.847	1.00
145_E	149_G	0.846	1.00
118_D	122_T	0.840	1.00
27_R	107_R	0.826	1.00
13_T	84_T	0.826	1.00
112_G	146_A	0.825	1.00
23_A	27_R	0.822	1.00
117_R	154_M	0.819	1.00
98_D	172_Y	0.817	1.00
132_G	182_R	0.810	1.00
26_Q	49_Q	0.807	1.00
162_R	165_A	0.806	1.00
12_V	115_Y	0.805	1.00
68_C	86_P	0.799	1.00
12_V	119_M	0.793	1.00
19_R	22_A	0.790	1.00
21_D	68_C	0.783	1.00
85_T	107_R	0.780	1.00
98_D	167_Y	0.774	1.00
59_D	62_S	0.771	1.00
27_R	85_T	0.770	1.00
159_V	163_R	0.768	1.00
135_N	181_L	0.759	1.00
35_R	38_L	0.756	1.00
152_A	178_Y	0.754	1.00
163_R	181_L	0.751	1.00
69_V	113_S	0.748	1.00
22_A	26_Q	0.747	1.00
101_W	137_S	0.741	1.00
106_L	115_Y	0.741	1.00
29_C	105_W	0.735	1.00
37_S	141_Y	0.735	1.00
51_D	54_E	0.732	1.00
33_R	111_T	0.731	1.00
54_E	58_E	0.730	1.00
112_G	117_R	0.726	1.00
139_A	162_R	0.722	1.00
140_A	176_V	0.718	1.00
134_H	183_R	0.714	1.00
121_T	154_M	0.712	1.00
99_R	135_N	0.710	1.00
48_Q	51_D	0.709	1.00
11_R	114_G	0.708	1.00
47_E	50_A	0.706	1.00
145_E	152_A	0.698	1.00
140_A	147_S	0.693	1.00
19_R	57_V	0.690	1.00
110_Y	113_S	0.689	1.00
167_Y	171_G	0.686	1.00
31_D	107_R	0.685	1.00
139_A	175_E	0.684	1.00
24_H	107_R	0.673	1.00
120_A	150_L	0.673	1.00
37_S	143_F	0.671	1.00
27_R	109_E	0.663	1.00
164_E	172_Y	0.662	1.00
112_G	149_G	0.652	1.00
138_A	147_S	0.650	1.00
55_H	59_D	0.649	1.00
10_D	118_D	0.647	1.00
143_F	171_G	0.643	1.00
28_S	86_P	0.642	1.00
9_G	14_L	0.638	1.00
67_V	90_F	0.637	1.00
64_V	91_S	0.635	1.00
117_R	146_A	0.632	1.00
69_V	110_Y	0.624	1.00
149_G	153_A	0.615	1.00
90_F	120_A	0.615	1.00
100_A	127_V	0.610	1.00
32_P	36_H	0.609	1.00
151_L	178_Y	0.607	1.00
12_V	118_D	0.606	1.00
157_T	163_R	0.606	1.00
47_E	51_D	0.606	1.00
106_L	110_Y	0.597	1.00
146_A	149_G	0.597	1.00
95_V	100_A	0.594	1.00
87_I	115_Y	0.593	1.00
31_D	111_T	0.592	1.00
44_R	49_Q	0.591	1.00
168_I	171_G	0.590	1.00
26_Q	30_T	0.590	1.00
92_A	100_A	0.586	1.00
15_R	18_E	0.586	1.00
116_G	120_A	0.586	1.00
138_A	178_Y	0.582	1.00
115_Y	118_D	0.582	1.00
27_R	30_T	0.579	1.00
11_R	70_D	0.579	1.00
35_R	40_S	0.577	1.00
104_Y	116_G	0.575	1.00
154_M	180_V	0.574	1.00
15_R	66_V	0.572	1.00
67_V	115_Y	0.569	1.00
120_A	156_F	0.568	1.00
135_N	165_A	0.567	1.00
137_S	162_R	0.567	1.00
142_D	148_R	0.562	1.00
46_R	49_Q	0.559	1.00
56_W	64_V	0.557	1.00
164_E	182_R	0.554	1.00
104_Y	150_L	0.552	1.00
139_A	177_W	0.551	1.00
112_G	150_L	0.550	1.00
166_R	175_E	0.548	1.00
100_A	136_V	0.544	1.00
125_D	130_Q	0.544	1.00
137_S	165_A	0.543	1.00
55_H	58_E	0.540	1.00
34_I	105_W	0.533	1.00
67_V	88_G	0.528	1.00
98_D	134_H	0.523	1.00
164_E	181_L	0.521	1.00
53_I	57_V	0.520	1.00
106_L	111_T	0.518	1.00
53_I	56_W	0.518	1.00
49_Q	52_G	0.518	1.00
38_L	105_W	0.517	1.00
141_Y	168_I	0.517	1.00
167_Y	170_G	0.516	1.00
93_R	101_W	0.514	1.00
94_H	100_A	0.512	1.00
168_I	173_A	0.510	1.00
86_P	89_S	0.506	1.00
38_L	41_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pzjA	2	0.9162	100	0.314	Contact Map
1yreA	2	0.8953	100	0.34	Contact Map
2vzyA	3	0.8377	100	0.341	Contact Map
3tcvA	2	0.9424	100	0.356	Contact Map
2z10A	2	0.9267	100	0.361	Contact Map
2fckA	2	0.8796	100	0.364	Contact Map
3r9fA	1	0.8691	100	0.374	Contact Map
2zw5A	2	0.9162	100	0.376	Contact Map
3fbuA	2	0.8691	100	0.383	Contact Map
1nslA	3	0.8901	100	0.385	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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