Q9HRS9 - HALSA - GREMLIN Contacts

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Q9HRS9 - Uncharacterized protein

UniProt:	Q9HRS9	Sequences: MVPGAIAGDVYVTTLSTFVPGVSLALRADALGVLFALLASTLWLAASFYSIGYMRGLGEHSQTRYFAAFAGSIASAIAVAFAANLVVLYLAYELLTVATYPLVVHDETDAARAAGRKYLAYTFGGGVAVLAGVVLVYHATGTTAFAPGGIGGLATADPTLARAAFGLLITGFGVKAALMPLHSWLPDAMVAPTPVSGLLHAVAVVKSGVFGIARVLLDVYGIDLVAHLNVGMAVAVVAAITLIVASVIALRQDNLKRRLAFSTVSQLSYIVLGLAVGAATPGADATKWALIGGLLHIPAHAFMKLTLFFCAGALHVETHTDDISDMAGIGKRMPLTMTAFAVAAAGMAGIPLVAGFVSKYFLLIGTVTGGHLVFTAALLVSGVLNIAYFWPVVYTAFFESQGDSDEKPLVSGALGGRLGGHTRADGGHEGGGFERRAVSGAEGSWFLIGPVVFAAFGSIVLGVIPDTAVFLSLVRTVVDTATAMGVVGV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	489 (383)
Sequences:	16380 (8449)
Seq/√Len:	431.7

ECOLI - HYFB NUOL HYCC HYFD HYFF NUOM NUON
BACSU - MRPA MRPD NDHF
HALSA - Q9HRS9 Q9HRL3 Q9HRT0 Q9HRL2 Q9HRL1 Q9HRS8
SULSO - Q97ZA9 Q980G8 Q980G9 Q97ZA6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
29_D	214_R	4.559	1.00
306_T	343_A	4.474	1.00
78_A	91_A	4.202	1.00
36_A	81_F	3.692	1.00
144_A	147_P	3.621	1.00
104_V	115_G	3.433	1.00
299_A	354_A	3.262	1.00
43_W	73_I	3.191	1.00
254_N	321_D	3.180	1.00
142_T	147_P	3.072	1.00
117_K	187_D	2.972	1.00
242_L	381_S	2.799	1.00
296_H	358_S	2.671	1.00
39_A	80_A	2.662	1.00
320_T	325_D	2.660	1.00
253_D	324_S	2.659	1.00
341_A	393_V	2.504	1.00
36_A	77_I	2.488	1.00
259_L	311_A	2.432	1.00
258_R	323_I	2.431	1.00
238_A	275_A	2.429	1.00
322_D	325_D	2.426	1.00
344_A	389_F	2.408	1.00
132_G	167_L	2.337	1.00
75_S	94_L	2.310	1.00
50_S	65_Y	2.274	1.00
272_L	378_L	2.269	1.00
178_L	271_V	2.218	1.00
40_S	77_I	2.198	1.00
189_M	205_V	2.174	1.00
250_L	387_A	2.142	1.00
243_I	381_S	1.992	1.00
295_L	358_S	1.979	1.00
189_M	196_S	1.965	1.00
38_L	301_A	1.956	1.00
333_M	336_T	1.955	1.00
363_L	378_L	1.950	1.00
232_M	236_V	1.915	1.00
27_R	83_A	1.907	1.00
262_S	388_Y	1.867	1.00
139_A	164_A	1.853	1.00
246_S	265_S	1.808	1.00
253_D	322_D	1.798	1.00
292_G	365_G	1.773	1.00
179_M	240_I	1.764	1.00
82_A	87_V	1.760	1.00
235_A	275_A	1.751	1.00
273_G	362_L	1.741	1.00
85_L	148_G	1.734	1.00
85_L	215_V	1.713	1.00
239_A	377_A	1.703	1.00
330_G	337_M	1.678	1.00
169_I	173_G	1.655	1.00
391_P	395_T	1.654	1.00
29_D	32_G	1.650	1.00
364_I	368_T	1.647	1.00
177_A	185_L	1.645	1.00
88_L	211_G	1.641	1.00
83_A	146_A	1.638	1.00
205_V	263_T	1.633	1.00
372_L	376_A	1.617	1.00
34_L	298_P	1.610	1.00
213_A	274_L	1.604	1.00
366_T	375_T	1.578	1.00
234_V	275_A	1.571	1.00
255_L	392_V	1.569	1.00
235_A	374_F	1.559	1.00
32_G	210_F	1.553	1.00
173_G	178_L	1.512	1.00
252_Q	257_R	1.507	1.00
135_L	164_A	1.504	1.00
340_F	392_V	1.501	1.00
276_V	289_A	1.500	1.00
68_A	101_P	1.486	1.00
337_M	393_V	1.485	1.00
229_N	232_M	1.480	1.00
79_V	207_S	1.476	1.00
274_L	293_G	1.473	1.00
84_N	144_A	1.462	1.00
337_M	398_F	1.455	1.00
25_A	83_A	1.453	1.00
340_F	344_A	1.452	1.00
28_A	81_F	1.447	1.00
246_S	381_S	1.446	1.00
276_V	366_T	1.433	1.00
47_S	69_F	1.433	1.00
323_I	396_A	1.432	1.00
102_L	195_V	1.424	1.00
114_A	190_V	1.416	1.00
132_G	171_G	1.400	1.00
110_A	190_V	1.390	1.00
303_M	346_G	1.389	1.00
84_N	143_T	1.379	1.00
47_S	66_F	1.377	1.00
213_A	293_G	1.371	1.00
172_F	211_G	1.371	1.00
42_L	305_L	1.356	1.00
273_G	289_A	1.354	1.00
61_S	64_R	1.348	1.00
17_T	23_S	1.346	1.00
121_Y	183_S	1.342	1.00
178_L	237_V	1.339	1.00
347_M	389_F	1.335	1.00
27_R	30_A	1.331	1.00
49_Y	309_F	1.330	1.00
88_L	145_F	1.323	1.00
159_T	163_A	1.315	1.00
265_S	385_N	1.303	1.00
169_I	234_V	1.302	1.00
270_I	293_G	1.291	1.00
212_I	271_V	1.286	1.00
231_G	235_A	1.282	1.00
134_V	138_H	1.277	1.00
307_L	343_A	1.275	1.00
42_L	301_A	1.262	1.00
238_A	272_L	1.244	1.00
361_F	364_I	1.238	1.00
135_L	160_L	1.220	1.00
236_V	240_I	1.217	1.00
345_A	350_I	1.215	1.00
17_T	20_P	1.211	1.00
70_A	74_A	1.209	1.00
179_M	244_V	1.199	1.00
244_V	248_I	1.198	1.00
238_A	268_S	1.193	1.00
315_H	321_D	1.191	1.00
323_I	395_T	1.184	1.00
86_V	143_T	1.180	1.00
317_E	333_M	1.172	1.00
40_S	44_L	1.170	1.00
15_L	23_S	1.166	1.00
132_G	168_L	1.166	1.00
44_L	48_F	1.164	1.00
39_A	73_I	1.159	1.00
85_L	133_V	1.158	1.00
341_A	397_F	1.152	1.00
373_V	376_A	1.150	1.00
314_L	329_I	1.147	1.00
310_C	340_F	1.147	1.00
191_A	200_H	1.141	1.00
142_T	148_G	1.140	1.00
139_A	160_L	1.137	1.00
140_T	148_G	1.131	1.00
128_A	167_L	1.130	1.00
132_G	164_A	1.129	1.00
340_F	397_F	1.128	1.00
292_G	361_F	1.125	1.00
313_A	336_T	1.125	1.00
187_D	257_R	1.122	1.00
367_V	375_T	1.118	1.00
41_T	45_A	1.117	1.00
273_G	293_G	1.116	1.00
133_V	168_L	1.107	1.00
137_Y	143_T	1.106	1.00
35_F	297_I	1.105	1.00
162_R	229_N	1.097	1.00
69_F	198_L	1.096	1.00
174_V	181_L	1.095	1.00
15_L	19_V	1.094	1.00
327_A	395_T	1.093	1.00
129_V	133_V	1.081	1.00
206_K	210_F	1.079	1.00
128_A	170_T	1.078	1.00
135_L	139_A	1.077	1.00
209_V	271_V	1.077	1.00
338_T	342_V	1.076	1.00
344_A	393_V	1.073	1.00
299_A	358_S	1.068	1.00
113_A	117_K	1.067	1.00
32_G	36_A	1.066	1.00
89_Y	130_L	1.066	1.00
108_T	111_A	1.065	1.00
136_V	164_A	1.064	1.00
278_A	289_A	1.060	1.00
158_P	162_R	1.055	1.00
210_F	214_R	1.054	1.00
83_A	144_A	1.050	1.00
164_A	168_L	1.049	1.00
28_A	33_V	1.048	1.00
42_L	201_A	1.047	1.00
360_Y	364_I	1.043	1.00
376_A	380_V	1.038	1.00
52_G	55_R	1.037	1.00
129_V	171_G	1.036	1.00
31_L	294_L	1.035	1.00
289_A	365_G	1.033	1.00
125_G	174_V	1.032	1.00
327_A	402_G	1.031	1.00
162_R	230_V	1.022	1.00
272_L	366_T	1.020	1.00
404_S	407_K	1.006	1.00
173_G	237_V	1.005	1.00
303_M	355_G	1.001	1.00
409_L	412_G	0.999	1.00
189_M	200_H	0.997	1.00
34_L	294_L	0.996	1.00
406_E	409_L	0.996	1.00
71_G	98_A	0.996	1.00
247_V	384_L	0.991	1.00
254_N	322_D	0.990	1.00
14_T	17_T	0.988	1.00
266_Q	388_Y	0.986	1.00
109_D	113_A	0.986	1.00
145_F	149_G	0.985	1.00
335_L	339_A	0.984	1.00
112_R	115_G	0.984	1.00
335_L	338_T	0.981	1.00
246_S	388_Y	0.980	1.00
137_Y	140_T	0.980	1.00
209_V	270_I	0.972	1.00
153_L	156_A	0.970	1.00
242_L	272_L	0.969	1.00
39_A	76_A	0.969	1.00
22_V	86_V	0.967	1.00
193_T	256_K	0.965	1.00
185_L	189_M	0.964	1.00
159_T	162_R	0.964	1.00
31_L	213_A	0.962	1.00
363_L	375_T	0.954	1.00
143_T	147_P	0.951	1.00
300_H	304_K	0.950	1.00
176_A	209_V	0.950	1.00
157_D	161_A	0.949	1.00
266_Q	385_N	0.944	1.00
111_A	190_V	0.943	1.00
196_S	200_H	0.942	1.00
46_A	309_F	0.941	1.00
149_G	218_D	0.939	1.00
166_G	170_T	0.935	1.00
38_L	298_P	0.935	1.00
239_A	374_F	0.932	1.00
270_I	297_I	0.928	1.00
26_L	81_F	0.919	1.00
240_I	244_V	0.919	1.00
142_T	145_F	0.919	1.00
77_I	81_F	0.917	1.00
245_A	268_S	0.915	1.00
338_T	397_F	0.914	1.00
407_K	410_V	0.912	1.00
103_V	188_A	0.910	1.00
266_Q	296_H	0.910	1.00
162_R	166_G	0.909	1.00
327_A	399_E	0.909	1.00
332_R	401_Q	0.909	1.00
239_A	272_L	0.908	1.00
402_G	405_D	0.908	1.00
258_R	392_V	0.907	1.00
295_L	299_A	0.903	1.00
246_S	384_L	0.902	1.00
205_V	210_F	0.902	1.00
197_G	309_F	0.900	1.00
215_V	219_V	0.897	1.00
32_G	214_R	0.893	1.00
310_C	339_A	0.892	1.00
165_F	230_V	0.889	1.00
63_T	67_A	0.888	1.00
151_G	154_A	0.885	1.00
337_M	341_A	0.885	1.00
263_T	300_H	0.881	1.00
72_S	76_A	0.880	1.00
13_T	25_A	0.877	1.00
235_A	239_A	0.876	1.00
279_A	288_W	0.874	1.00
37_L	41_T	0.873	1.00
99_T	204_V	0.872	1.00
185_L	188_A	0.870	1.00
110_A	113_A	0.869	1.00
393_V	398_F	0.868	1.00
100_Y	122_T	0.866	1.00
235_A	238_A	0.861	1.00
89_Y	93_E	0.859	1.00
405_D	408_P	0.859	1.00
89_Y	133_V	0.859	1.00
232_M	235_A	0.858	1.00
200_H	304_K	0.857	1.00
25_A	144_A	0.857	1.00
278_A	365_G	0.855	1.00
318_T	326_M	0.852	1.00
49_Y	312_G	0.851	1.00
35_F	210_F	0.851	1.00
169_I	212_I	0.849	1.00
65_Y	194_P	0.849	1.00
157_D	160_L	0.848	1.00
296_H	303_M	0.847	1.00
385_N	388_Y	0.846	1.00
302_F	354_A	0.845	1.00
76_A	95_L	0.844	1.00
189_M	263_T	0.843	1.00
265_S	388_Y	0.842	1.00
76_A	202_V	0.840	1.00
156_A	159_T	0.840	1.00
163_A	166_G	0.839	1.00
331_K	334_P	0.838	1.00
249_A	388_Y	0.838	1.00
95_L	204_V	0.836	1.00
408_P	411_S	0.832	1.00
100_Y	115_G	0.832	1.00
259_L	307_L	0.828	1.00
43_W	69_F	0.826	1.00
136_V	148_G	0.822	1.00
213_A	290_L	0.822	1.00
40_S	73_I	0.822	1.00
243_I	247_V	0.818	1.00
233_A	236_V	0.817	1.00
62_Q	66_F	0.815	1.00
218_D	221_G	0.814	1.00
186_P	261_F	0.810	1.00
255_L	311_A	0.805	1.00
273_G	292_G	0.804	1.00
46_A	197_G	0.800	1.00
151_G	155_T	0.798	1.00
235_A	272_L	0.797	1.00
212_I	274_L	0.796	1.00
349_G	359_K	0.794	1.00
42_L	198_L	0.792	1.00
344_A	392_V	0.790	1.00
246_S	262_S	0.789	1.00
92_Y	129_V	0.787	1.00
269_Y	378_L	0.787	1.00
255_L	326_M	0.780	1.00
363_L	382_G	0.779	1.00
155_T	158_P	0.777	1.00
243_I	377_A	0.773	1.00
248_I	251_R	0.772	1.00
158_P	161_A	0.764	1.00
191_A	196_S	0.760	1.00
404_S	408_P	0.758	1.00
346_G	355_G	0.753	1.00
75_S	98_A	0.752	1.00
238_A	271_V	0.750	1.00
37_L	40_S	0.749	1.00
103_V	191_A	0.748	1.00
72_S	204_V	0.747	1.00
161_A	223_D	0.747	1.00
269_Y	381_S	0.745	1.00
255_L	396_A	0.745	1.00
152_G	156_A	0.743	1.00
269_Y	362_L	0.742	1.00
323_I	326_M	0.740	1.00
295_L	361_F	0.736	1.00
89_Y	126_G	0.734	1.00
209_V	267_L	0.733	1.00
130_L	134_V	0.733	1.00
348_A	386_I	0.731	1.00
279_A	291_I	0.730	1.00
313_A	317_E	0.730	1.00
45_A	305_L	0.730	1.00
39_A	77_I	0.725	1.00
50_S	53_Y	0.724	1.00
13_T	16_S	0.724	1.00
72_S	198_L	0.723	1.00
25_A	84_N	0.720	1.00
389_F	392_V	0.717	1.00
390_W	394_Y	0.716	1.00
200_H	263_T	0.716	1.00
377_A	381_S	0.715	1.00
28_A	32_G	0.715	1.00
337_M	397_F	0.715	1.00
95_L	207_S	0.711	1.00
17_T	21_G	0.711	1.00
136_V	168_L	0.711	1.00
163_A	167_L	0.710	1.00
346_G	353_V	0.708	1.00
72_S	99_T	0.708	1.00
393_V	397_F	0.707	1.00
340_F	389_F	0.706	1.00
65_Y	102_L	0.705	1.00
320_T	326_M	0.698	1.00
16_S	19_V	0.697	1.00
406_E	411_S	0.696	1.00
153_L	157_D	0.696	1.00
209_V	297_I	0.696	1.00
13_T	19_V	0.696	1.00
288_W	368_T	0.692	1.00
186_P	264_V	0.692	1.00
252_Q	261_F	0.692	1.00
176_A	212_I	0.690	1.00
14_T	19_V	0.687	1.00
196_S	205_V	0.683	1.00
165_F	169_I	0.681	1.00
325_D	404_S	0.680	1.00
65_Y	195_V	0.679	1.00
193_T	200_H	0.679	1.00
76_A	204_V	0.677	1.00
408_P	412_G	0.676	1.00
326_M	396_A	0.676	1.00
381_S	384_L	0.676	1.00
193_T	196_S	0.675	1.00
152_G	155_T	0.675	1.00
212_I	220_Y	0.674	1.00
108_T	190_V	0.672	1.00
33_V	37_L	0.672	1.00
349_G	355_G	0.670	1.00
165_F	220_Y	0.670	1.00
329_I	333_M	0.669	1.00
262_S	266_Q	0.666	1.00
87_V	90_L	0.665	1.00
353_V	357_V	0.663	1.00
262_S	300_H	0.660	1.00
43_W	198_L	0.660	1.00
200_H	205_V	0.659	1.00
248_I	261_F	0.658	0.99
80_A	210_F	0.655	0.99
238_A	242_L	0.655	0.99
338_T	341_A	0.655	0.99
160_L	163_A	0.654	0.99
344_A	348_A	0.654	0.99
167_L	171_G	0.653	0.99
266_Q	304_K	0.652	0.99
92_Y	207_S	0.652	0.99
263_T	267_L	0.651	0.99
253_D	262_S	0.649	0.99
192_P	200_H	0.649	0.99
348_A	390_W	0.648	0.99
79_V	95_L	0.647	0.99
386_I	390_W	0.646	0.99
407_K	412_G	0.646	0.99
224_L	229_N	0.644	0.99
46_A	69_F	0.644	0.99
248_I	252_Q	0.643	0.99
175_K	256_K	0.640	0.99
300_H	308_F	0.640	0.99
160_L	164_A	0.639	0.99
247_V	251_R	0.639	0.99
324_S	395_T	0.636	0.99
177_A	205_V	0.633	0.99
289_A	293_G	0.631	0.99
330_G	397_F	0.631	0.99
222_I	229_N	0.631	0.99
19_V	22_V	0.630	0.99
200_H	300_H	0.629	0.99
383_V	387_A	0.628	0.99
276_V	369_G	0.627	0.99
246_S	385_N	0.627	0.99
32_G	80_A	0.620	0.99
176_A	208_G	0.616	0.99
261_F	264_V	0.616	0.99
35_F	80_A	0.615	0.99
349_G	353_V	0.613	0.99
239_A	243_I	0.612	0.99
365_G	369_G	0.611	0.99
391_P	394_Y	0.610	0.99
328_G	334_P	0.609	0.99
135_L	163_A	0.608	0.99
35_F	39_A	0.606	0.99
331_K	400_S	0.605	0.99
196_S	300_H	0.605	0.99
185_L	205_V	0.604	0.99
337_M	396_A	0.603	0.99
123_F	126_G	0.603	0.99
303_M	347_M	0.603	0.99
42_L	202_V	0.600	0.99
405_D	409_L	0.600	0.99
389_F	393_V	0.600	0.99
46_A	194_P	0.600	0.99
342_V	346_G	0.599	0.99
79_V	92_Y	0.598	0.99
13_T	17_T	0.597	0.99
179_M	245_A	0.596	0.99
345_A	390_W	0.595	0.99
53_Y	194_P	0.595	0.99
88_L	129_V	0.595	0.99
403_D	406_E	0.591	0.99
195_V	198_L	0.591	0.99
196_S	199_L	0.590	0.99
103_V	199_L	0.585	0.99
399_E	402_G	0.584	0.99
27_R	146_A	0.583	0.99
242_L	269_Y	0.583	0.99
31_L	35_F	0.581	0.99
83_A	87_V	0.581	0.99
161_A	164_A	0.581	0.99
379_L	382_G	0.581	0.99
357_V	361_F	0.580	0.99
116_R	120_A	0.580	0.99
146_A	149_G	0.576	0.99
387_A	391_P	0.575	0.99
85_L	136_V	0.575	0.99
39_A	206_K	0.574	0.99
39_A	259_L	0.570	0.99
328_G	401_Q	0.570	0.99
48_F	51_I	0.570	0.99
96_T	99_T	0.569	0.99
262_S	304_K	0.568	0.99
196_S	202_V	0.568	0.99
314_L	326_M	0.567	0.99
205_V	208_G	0.567	0.99
395_T	399_E	0.566	0.98
310_C	336_T	0.565	0.98
189_M	260_A	0.565	0.98
323_I	392_V	0.565	0.98
144_A	149_G	0.564	0.98
129_V	211_G	0.561	0.98
65_Y	105_H	0.561	0.98
198_L	202_V	0.561	0.98
38_L	297_I	0.560	0.98
255_L	314_L	0.559	0.98
206_K	209_V	0.559	0.98
49_Y	53_Y	0.558	0.98
206_K	267_L	0.558	0.98
328_G	331_K	0.558	0.98
70_A	73_I	0.555	0.98
39_A	43_W	0.555	0.98
342_V	353_V	0.554	0.98
334_P	337_M	0.553	0.98
125_G	171_G	0.552	0.98
332_R	405_D	0.552	0.98
99_T	103_V	0.550	0.98
236_V	239_A	0.550	0.98
252_Q	258_R	0.550	0.98
189_M	201_A	0.545	0.98
348_A	389_F	0.545	0.98
340_F	393_V	0.545	0.98
178_L	267_L	0.544	0.98
341_A	398_F	0.544	0.98
260_A	263_T	0.540	0.98
314_L	336_T	0.540	0.98
245_A	248_I	0.538	0.98
59_E	106_D	0.538	0.98
205_V	209_V	0.537	0.98
273_G	277_G	0.537	0.98
64_R	68_A	0.537	0.98
231_G	277_G	0.537	0.98
99_T	102_L	0.537	0.98
328_G	399_E	0.536	0.98
179_M	182_H	0.535	0.98
188_A	260_A	0.533	0.98
307_L	311_A	0.531	0.98
53_Y	192_P	0.530	0.98
314_L	397_F	0.530	0.98
341_A	344_A	0.530	0.98
68_A	98_A	0.529	0.98
191_A	198_L	0.529	0.98
223_D	229_N	0.529	0.98
112_R	116_R	0.528	0.98
195_V	200_H	0.527	0.98
205_V	267_L	0.524	0.98
403_D	407_K	0.524	0.98
166_G	230_V	0.524	0.98
49_Y	197_G	0.522	0.97
293_G	299_A	0.522	0.97
214_R	218_D	0.522	0.97
165_F	219_V	0.522	0.97
330_G	341_A	0.521	0.97
241_T	271_V	0.521	0.97
246_S	266_Q	0.520	0.97
242_L	374_F	0.520	0.97
85_L	145_F	0.520	0.97
155_T	159_T	0.519	0.97
73_I	77_I	0.518	0.97
131_A	135_L	0.518	0.97
381_S	385_N	0.518	0.97
220_Y	223_D	0.517	0.97
229_N	233_A	0.514	0.97
403_D	409_L	0.514	0.97
190_V	257_R	0.510	0.97
339_A	343_A	0.509	0.97
133_V	143_T	0.508	0.97
304_K	308_F	0.507	0.97
169_I	237_V	0.507	0.97
168_L	212_I	0.506	0.97
157_D	162_R	0.506	0.97
296_H	299_A	0.505	0.97
31_L	210_F	0.504	0.97
311_A	326_M	0.504	0.97
92_Y	211_G	0.503	0.97
221_G	224_L	0.503	0.97
196_S	256_K	0.503	0.97
315_H	319_H	0.503	0.97
44_L	47_S	0.503	0.97
291_I	294_L	0.502	0.97
201_A	305_L	0.501	0.97
266_Q	269_Y	0.500	0.97
154_A	158_P	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3rkoL	1	0.9571	100	0.209	Contact Map
4he8L	1	0.955	100	0.218	Contact Map
3rkoM	1	0.8875	100	0.243	Contact Map
3rkoN	1	0.8671	100	0.265	Contact Map
4he8M	1	0.8589	100	0.27	Contact Map
4he8N	1	0.816	100	0.319	Contact Map
4he8K	1	0.1881	61.2	0.961	Contact Map
3rkoK	1	0.1963	59.2	0.962	Contact Map
3wdoA	1	0.8323	14.1	0.972	Contact Map
1pw4A	1	0.7301	10.6	0.974	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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