Q9HRQ4 - HALSA - GREMLIN Contacts

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Q9HRQ4 - Diphosphomevalonate decarboxylase

UniProt:	Q9HRQ4	Sequences: MRATPPHRRMKATARAHPIQGLVKYHGMRDESLRMPYHDSISVCTAPSNTTTTVEFDPDRDADQYVVDGDTVTGHGADRIRSVVDAVRDRAGFDHRVRLESQNSFPTNIGLGSSSSGFAAAALACVRAAGLDLDLPTVSTVARRGSASAARAVTGGFSDLHAGLNDADCRSERLDAPAEFASDLRIVVGEVPAYKETESAHAEAADSHMFDARLAHVQGQLAEMRDAVRAGDFQRVFETAEHDSLSLAATTMTGPSGWVYWKPETLSIFETVRELRADGVPTYFSTDTGATVYVNTTASHADEVEAAVADCGVDTAVWEVGGPAHELDERDAIF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	334 (303)
Sequences:	1012 (679)
Seq/√Len:	39.0

HALSA - Q9HRQ4
SULSO - DMD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
13_T	53_T	4.356	1.00
224_M	239_T	4.150	1.00
161_H	172_E	3.757	1.00
29_R	35_M	3.608	1.00
16_A	119_A	3.569	1.00
63_D	88_R	3.536	1.00
234_Q	281_P	3.480	1.00
282_T	294_V	3.354	1.00
64_Q	71_T	3.057	1.00
15_R	51_T	3.044	1.00
50_T	116_S	2.951	1.00
188_V	268_I	2.821	1.00
159_D	225_R	2.811	1.00
57_D	60_R	2.793	1.00
134_D	137_T	2.684	1.00
11_K	55_E	2.649	1.00
224_M	236_V	2.576	1.00
265_T	286_T	2.526	1.00
281_P	300_H	2.516	1.00
297_T	300_H	2.461	1.00
65_Y	101_S	2.461	1.00
211_D	215_A	2.435	1.00
13_T	51_T	2.419	1.00
103_N	116_S	2.374	1.00
226_D	230_A	2.373	1.00
66_V	71_T	2.365	1.00
64_Q	98_R	2.315	1.00
186_I	268_I	2.266	1.00
15_R	49_N	2.224	0.99
101_S	117_G	2.193	0.99
223_E	235_R	2.184	0.99
261_W	269_F	2.143	0.99
97_V	128_A	2.125	0.99
227_A	239_T	2.087	0.99
278_D	307_A	2.041	0.99
31_E	201_H	2.034	0.99
165_N	168_D	2.022	0.99
245_L	284_F	1.948	0.99
41_I	221_L	1.941	0.99
232_D	235_R	1.898	0.98
269_F	284_F	1.888	0.98
55_E	100_E	1.854	0.98
234_Q	238_E	1.836	0.98
261_W	265_T	1.806	0.98
220_Q	243_D	1.806	0.98
144_R	166_D	1.793	0.97
103_N	107_T	1.757	0.97
140_T	166_D	1.737	0.97
87_V	125_C	1.723	0.97
147_A	160_L	1.718	0.97
236_V	239_T	1.698	0.96
243_D	247_L	1.684	0.96
241_E	276_R	1.669	0.96
203_E	251_T	1.636	0.96
29_R	166_D	1.629	0.96
219_G	223_E	1.607	0.95
209_M	253_T	1.591	0.95
263_P	266_L	1.574	0.95
261_W	266_L	1.554	0.94
54_V	124_A	1.545	0.94
136_P	154_T	1.543	0.94
238_E	255_P	1.525	0.94
274_E	278_D	1.513	0.93
67_V	107_T	1.503	0.93
250_T	253_T	1.497	0.93
175_D	179_E	1.491	0.93
182_S	298_A	1.487	0.93
209_M	246_S	1.479	0.93
233_F	297_T	1.472	0.92
237_F	283_Y	1.464	0.92
14_A	127_R	1.458	0.92
38_H	217_V	1.455	0.92
39_D	218_Q	1.442	0.92
213_R	243_D	1.442	0.92
53_T	100_E	1.411	0.91
273_R	284_F	1.401	0.90
272_V	282_T	1.387	0.90
55_E	98_R	1.385	0.90
84_V	97_V	1.382	0.90
31_E	34_R	1.379	0.90
160_L	291_T	1.378	0.90
286_T	292_V	1.378	0.90
224_M	240_A	1.377	0.90
84_V	99_L	1.371	0.89
81_R	85_D	1.368	0.89
182_S	301_A	1.316	0.87
56_F	129_A	1.309	0.87
84_V	125_C	1.295	0.86
198_E	202_A	1.291	0.86
176_A	179_E	1.290	0.86
39_D	159_D	1.289	0.86
97_V	125_C	1.283	0.86
272_V	294_V	1.264	0.85
235_R	239_T	1.260	0.85
34_R	197_T	1.253	0.85
251_T	258_W	1.251	0.84
203_E	253_T	1.237	0.84
223_E	239_T	1.235	0.84
274_E	277_A	1.234	0.84
150_A	160_L	1.224	0.83
164_L	168_D	1.220	0.83
213_R	293_Y	1.199	0.82
65_Y	72_V	1.190	0.81
39_D	161_H	1.179	0.81
29_R	168_D	1.171	0.80
198_E	201_H	1.166	0.80
19_I	26_H	1.162	0.80
111_L	185_R	1.160	0.80
197_T	286_T	1.154	0.79
112_G	288_T	1.138	0.78
238_E	242_H	1.138	0.78
296_T	304_V	1.136	0.78
176_A	180_F	1.129	0.78
78_D	82_S	1.108	0.76
245_L	253_T	1.102	0.76
227_A	235_R	1.088	0.75
235_R	238_E	1.084	0.75
203_E	250_T	1.084	0.75
33_L	163_G	1.079	0.74
209_M	250_T	1.074	0.74
50_T	103_N	1.072	0.74
160_L	169_C	1.072	0.74
51_T	268_I	1.068	0.74
51_T	102_Q	1.062	0.73
196_E	288_T	1.059	0.73
37_Y	210_F	1.055	0.73
43_V	157_F	1.048	0.72
21_G	26_H	1.041	0.72
61_D	96_R	1.040	0.72
87_V	97_V	1.039	0.72
89_D	277_A	1.032	0.71
199_S	258_W	1.025	0.71
243_D	293_Y	1.013	0.70
181_A	295_N	1.011	0.70
60_R	96_R	1.003	0.69
187_V	190_E	0.999	0.69
181_A	236_V	0.994	0.68
56_F	128_A	0.988	0.68
264_E	267_S	0.981	0.67
37_Y	214_L	0.978	0.67
275_L	307_A	0.970	0.66
216_H	246_S	0.968	0.66
90_R	131_L	0.961	0.66
184_L	296_T	0.956	0.65
180_F	231_G	0.954	0.65
197_T	247_L	0.952	0.65
251_T	259_V	0.949	0.65
249_A	252_M	0.944	0.64
268_I	308_V	0.942	0.64
139_S	142_A	0.938	0.64
41_I	174_L	0.937	0.64
228_V	236_V	0.934	0.63
268_I	272_V	0.934	0.63
125_C	128_A	0.928	0.63
285_S	295_N	0.924	0.62
67_V	103_N	0.912	0.61
19_I	28_M	0.911	0.61
126_V	129_A	0.910	0.61
65_Y	116_S	0.902	0.61
225_R	229_R	0.899	0.60
288_T	291_T	0.898	0.60
18_P	48_S	0.898	0.60
28_M	196_E	0.897	0.60
213_R	220_Q	0.896	0.60
87_V	126_V	0.895	0.60
241_E	283_Y	0.893	0.60
157_F	180_F	0.893	0.60
230_A	278_D	0.892	0.60
105_F	213_R	0.891	0.60
60_R	98_R	0.891	0.60
139_S	143_R	0.889	0.59
49_N	104_S	0.887	0.59
241_E	244_S	0.887	0.59
69_G	100_E	0.887	0.59
29_R	164_L	0.885	0.59
247_L	293_Y	0.883	0.59
85_D	89_D	0.880	0.59
296_T	300_H	0.878	0.58
203_E	210_F	0.878	0.58
86_A	90_R	0.872	0.58
233_F	236_V	0.872	0.58
226_D	235_R	0.870	0.58
254_G	257_G	0.869	0.58
176_A	228_V	0.860	0.57
21_G	28_M	0.860	0.57
54_V	97_V	0.860	0.57
19_I	25_Y	0.858	0.57
21_G	112_G	0.851	0.56
20_Q	45_T	0.851	0.56
79_R	118_F	0.850	0.56
82_S	85_D	0.849	0.56
93_F	129_A	0.843	0.55
275_L	303_E	0.843	0.55
112_G	196_E	0.838	0.55
86_A	144_R	0.835	0.55
244_S	276_R	0.834	0.55
54_V	128_A	0.830	0.54
57_D	61_D	0.826	0.54
18_P	104_S	0.826	0.54
18_P	251_T	0.826	0.54
48_S	185_R	0.819	0.53
136_P	170_R	0.818	0.53
97_V	129_A	0.816	0.53
159_D	221_L	0.815	0.53
22_L	236_V	0.814	0.53
28_M	288_T	0.813	0.53
28_M	44_C	0.810	0.52
19_I	248_A	0.802	0.52
162_A	218_Q	0.801	0.52
28_M	112_G	0.800	0.52
109_I	200_A	0.798	0.51
21_G	24_K	0.795	0.51
62_A	230_A	0.792	0.51
19_I	42_S	0.791	0.51
113_S	146_S	0.788	0.50
280_V	300_H	0.787	0.50
221_L	239_T	0.786	0.50
20_Q	26_H	0.785	0.50
45_T	121_A	0.784	0.50
19_I	24_K	0.783	0.50
261_W	284_F	0.783	0.50
11_K	53_T	0.783	0.50
19_I	45_T	0.782	0.50
18_P	105_F	0.782	0.50
19_I	291_T	0.780	0.50
79_R	197_T	0.780	0.50
56_F	97_V	0.774	0.49
216_H	219_G	0.774	0.49
224_M	228_V	0.773	0.49
65_Y	99_L	0.771	0.49
185_R	188_V	0.768	0.49
122_A	142_A	0.767	0.49
106_P	288_T	0.765	0.48
107_T	116_S	0.764	0.48
175_D	178_A	0.764	0.48
233_F	281_P	0.763	0.48
89_D	306_A	0.762	0.48
271_T	274_E	0.762	0.48
294_V	308_V	0.762	0.48
242_H	246_S	0.757	0.48
237_F	280_V	0.752	0.47
196_E	200_A	0.748	0.47
182_S	296_T	0.748	0.47
81_R	99_L	0.745	0.47
41_I	228_V	0.743	0.46
192_P	200_A	0.741	0.46
163_G	169_C	0.738	0.46
14_A	124_A	0.738	0.46
137_T	140_T	0.737	0.46
183_D	293_Y	0.736	0.46
247_L	285_S	0.735	0.46
54_V	121_A	0.735	0.46
68_D	74_G	0.733	0.45
25_Y	28_M	0.733	0.45
73_T	76_G	0.732	0.45
296_T	301_A	0.732	0.45
117_G	202_A	0.728	0.45
306_A	310_D	0.724	0.45
18_P	259_V	0.724	0.45
194_Y	199_S	0.724	0.45
298_A	301_A	0.720	0.44
26_H	200_A	0.717	0.44
241_E	284_F	0.715	0.44
80_I	117_G	0.713	0.44
58_P	95_H	0.709	0.43
157_F	228_V	0.706	0.43
19_I	288_T	0.704	0.43
277_A	306_A	0.702	0.43
212_A	216_H	0.701	0.43
286_T	293_Y	0.699	0.42
20_Q	285_S	0.697	0.42
59_D	274_E	0.696	0.42
67_V	101_S	0.696	0.42
43_V	183_D	0.694	0.42
28_M	45_T	0.692	0.42
241_E	245_L	0.692	0.42
249_A	253_T	0.692	0.42
16_A	121_A	0.691	0.42
43_V	181_A	0.691	0.42
197_T	250_T	0.690	0.42
236_V	240_A	0.689	0.42
29_R	163_G	0.688	0.41
213_R	253_T	0.686	0.41
181_A	297_T	0.685	0.41
90_R	137_T	0.685	0.41
201_H	205_A	0.683	0.41
123_L	127_R	0.683	0.41
200_A	203_E	0.682	0.41
44_C	155_G	0.681	0.41
106_P	196_E	0.680	0.41
192_P	195_K	0.675	0.40
232_D	238_E	0.672	0.40
226_D	229_R	0.671	0.40
18_P	258_W	0.670	0.40
19_I	152_A	0.669	0.40
38_H	265_T	0.666	0.40
276_R	283_Y	0.665	0.39
108_N	252_M	0.662	0.39
186_I	312_G	0.662	0.39
87_V	91_A	0.659	0.39
54_V	63_D	0.658	0.39
83_V	197_T	0.657	0.39
276_R	292_V	0.657	0.39
202_A	205_A	0.656	0.39
268_I	312_G	0.654	0.38
250_T	257_G	0.654	0.38
105_F	243_D	0.653	0.38
65_Y	80_I	0.649	0.38
147_A	248_A	0.646	0.38
165_N	309_A	0.645	0.38
122_A	153_V	0.645	0.38
240_A	257_G	0.639	0.37
268_I	313_V	0.639	0.37
302_D	306_A	0.638	0.37
234_Q	279_G	0.637	0.37
188_V	191_V	0.635	0.37
109_I	288_T	0.635	0.37
55_E	116_S	0.634	0.37
112_G	291_T	0.633	0.37
89_D	302_D	0.632	0.37
41_I	224_M	0.632	0.37
244_S	286_T	0.631	0.37
67_V	72_V	0.630	0.36
92_G	95_H	0.629	0.36
17_H	105_F	0.629	0.36
138_V	153_V	0.629	0.36
19_I	112_G	0.624	0.36
285_S	288_T	0.624	0.36
15_R	104_S	0.624	0.36
116_S	234_Q	0.623	0.36
207_S	254_G	0.621	0.36
186_I	294_V	0.619	0.36
135_L	303_E	0.619	0.36
26_H	288_T	0.619	0.36
197_T	254_G	0.617	0.35
20_Q	152_A	0.616	0.35
22_L	295_N	0.615	0.35
282_T	304_V	0.613	0.35
215_A	304_V	0.612	0.35
150_A	158_S	0.612	0.35
215_A	222_A	0.610	0.35
38_H	160_L	0.606	0.34
130_G	133_L	0.606	0.34
139_S	171_S	0.606	0.34
163_G	168_D	0.606	0.34
21_G	25_Y	0.606	0.34
68_D	102_Q	0.605	0.34
251_T	276_R	0.603	0.34
220_Q	246_S	0.599	0.34
22_L	221_L	0.598	0.34
268_I	303_E	0.597	0.34
56_F	60_R	0.595	0.34
246_S	253_T	0.592	0.33
248_A	291_T	0.589	0.33
99_L	121_A	0.589	0.33
50_T	239_T	0.588	0.33
202_A	294_V	0.586	0.33
301_A	305_E	0.584	0.33
78_D	303_E	0.584	0.33
19_I	196_E	0.582	0.33
173_R	177_P	0.581	0.32
183_D	213_R	0.580	0.32
26_H	196_E	0.579	0.32
58_P	310_D	0.579	0.32
74_G	77_A	0.576	0.32
213_R	247_L	0.576	0.32
118_F	145_G	0.575	0.32
81_R	274_E	0.575	0.32
83_V	251_T	0.573	0.32
245_L	257_G	0.573	0.32
24_K	27_G	0.571	0.32
162_A	172_E	0.571	0.32
199_S	260_Y	0.570	0.32
268_I	292_V	0.570	0.32
126_V	138_V	0.569	0.32
214_L	217_V	0.568	0.31
192_P	199_S	0.568	0.31
194_Y	198_E	0.567	0.31
304_V	310_D	0.566	0.31
269_F	293_Y	0.565	0.31
106_P	112_G	0.564	0.31
25_Y	36_P	0.563	0.31
160_L	265_T	0.563	0.31
19_I	147_A	0.562	0.31
99_L	274_E	0.562	0.31
50_T	54_V	0.561	0.31
26_H	45_T	0.560	0.31
134_D	299_S	0.560	0.31
79_R	258_W	0.559	0.31
59_D	230_A	0.559	0.31
29_R	162_A	0.555	0.30
181_A	239_T	0.555	0.30
200_A	293_Y	0.555	0.30
275_L	279_G	0.554	0.30
49_N	101_S	0.552	0.30
57_D	98_R	0.551	0.30
125_C	282_T	0.548	0.30
149_A	153_V	0.547	0.30
66_V	100_E	0.547	0.30
177_P	299_S	0.546	0.30
109_I	290_A	0.545	0.30
257_G	273_R	0.545	0.30
222_A	225_R	0.544	0.30
180_F	236_V	0.542	0.29
111_L	265_T	0.540	0.29
17_H	104_S	0.540	0.29
38_H	168_D	0.538	0.29
152_A	248_A	0.536	0.29
38_H	213_R	0.535	0.29
192_P	260_Y	0.535	0.29
239_T	243_D	0.533	0.29
275_L	304_V	0.533	0.29
61_D	78_D	0.531	0.29
35_M	166_D	0.530	0.29
196_E	199_S	0.528	0.28
245_L	276_R	0.527	0.28
73_T	77_A	0.527	0.28
220_Q	293_Y	0.526	0.28
182_S	297_T	0.526	0.28
23_V	239_T	0.524	0.28
264_E	268_I	0.524	0.28
303_E	307_A	0.523	0.28
61_D	64_Q	0.522	0.28
80_I	87_V	0.522	0.28
187_V	245_L	0.522	0.28
127_R	130_G	0.520	0.28
65_Y	81_R	0.519	0.28
158_S	173_R	0.517	0.28
26_H	112_G	0.515	0.27
120_A	131_L	0.514	0.27
244_S	291_T	0.513	0.27
45_T	285_S	0.512	0.27
53_T	132_D	0.511	0.27
215_A	300_H	0.511	0.27
91_A	131_L	0.511	0.27
173_R	176_A	0.510	0.27
17_H	236_V	0.509	0.27
189_G	262_K	0.509	0.27
204_A	217_V	0.508	0.27
87_V	129_A	0.508	0.27
200_A	288_T	0.508	0.27
76_G	272_V	0.507	0.27
32_S	229_R	0.506	0.27
51_T	104_S	0.506	0.27
267_S	270_E	0.505	0.27
253_T	257_G	0.504	0.27
211_D	214_L	0.502	0.27
23_V	41_I	0.502	0.27
212_A	253_T	0.502	0.27
282_T	296_T	0.501	0.26
73_T	277_A	0.501	0.26
72_V	286_T	0.501	0.26
229_R	310_D	0.501	0.26
123_L	174_L	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1fi4A	2	0.9731	100	0.564	Contact Map
3f0nA	2	0.9701	100	0.581	Contact Map
3qt5A	2	0.9701	100	0.598	Contact Map
2hkeA	1	0.9641	100	0.599	Contact Map
4rksA	1	0.9281	100	0.612	Contact Map
2gs8A	1	0.9401	100	0.629	Contact Map
3ltoA	2	0.9042	100	0.631	Contact Map
1h72C	2	0.8503	99.9	0.789	Contact Map
3hulA	4	0.8144	99.9	0.797	Contact Map
4p52A	2	0.8713	99.9	0.803	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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