Q9HRM9 - HALSA - GREMLIN Contacts

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Q9HRM9 - Molybdenum cofactor biosynthesis protein

UniProt:	Q9HRM9	Sequences: MTGRYYEGFEVGETIEHATRRTVSEADNQEFCDMTMNQQPLHLDAAFASETQFGERIVNGLYTMSLAVGITIPETTDGTIVANLSYDDVEHPAPVFHGDTIRVQSTVTDKRETSDGERGVVTMRVEVFAVNREDEPLVCEFERTVLSLKRAHDATGD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	157 (133)
Sequences:	6455 (4024)
Seq/√Len:	348.9

ECOLI - PAAZ
BACSU - YDEM
HALSA - Q9HRM9 Q9HN18
SULSO - Q97U86 Q97YZ5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
55_E	96_F	3.078	1.00
14_T	104_Q	3.010	1.00
22_T	100_T	2.518	1.00
109_D	122_T	2.515	1.00
14_T	106_T	2.468	1.00
88_D	142_E	2.437	1.00
10_E	13_E	2.422	1.00
108_T	124_R	2.416	1.00
93_A	135_E	2.315	1.00
28_N	97_H	2.258	1.00
21_R	27_D	2.084	1.00
25_E	45_A	1.915	1.00
106_T	124_R	1.914	1.00
63_T	95_V	1.900	1.00
45_A	49_S	1.875	1.00
46_A	49_S	1.854	1.00
16_E	104_Q	1.851	1.00
33_D	38_Q	1.720	1.00
45_A	56_R	1.710	1.00
25_E	56_R	1.684	1.00
130_V	137_L	1.679	1.00
24_S	27_D	1.667	1.00
124_R	142_E	1.661	1.00
64_M	89_V	1.644	1.00
111_R	120_V	1.636	1.00
11_V	109_D	1.634	1.00
23_V	66_L	1.614	1.00
95_V	138_V	1.593	1.00
29_Q	33_D	1.551	1.00
100_T	131_N	1.523	1.00
45_A	55_E	1.506	1.00
99_D	132_R	1.498	1.00
67_A	129_A	1.488	1.00
108_T	142_E	1.433	1.00
62_Y	66_L	1.428	1.00
104_Q	130_V	1.420	1.00
10_E	110_K	1.402	1.00
11_V	110_K	1.373	1.00
110_K	121_V	1.333	1.00
25_E	29_Q	1.323	1.00
70_I	103_V	1.302	1.00
20_R	100_T	1.296	1.00
20_R	102_R	1.293	1.00
87_D	122_T	1.280	1.00
122_T	142_E	1.270	1.00
63_T	139_C	1.264	1.00
67_A	103_V	1.262	1.00
131_N	135_E	1.252	1.00
40_P	47_F	1.234	1.00
46_A	50_E	1.233	1.00
90_E	140_E	1.228	1.00
32_C	59_N	1.227	1.00
23_V	62_Y	1.224	1.00
32_C	43_L	1.206	1.00
124_R	140_E	1.197	1.00
122_T	144_T	1.186	1.00
26_A	29_Q	1.181	1.00
14_T	17_H	1.161	1.00
92_P	140_E	1.135	1.00
95_V	101_I	1.119	1.00
120_V	144_T	1.117	1.00
87_D	142_E	1.109	1.00
17_H	104_Q	1.105	1.00
130_V	138_V	1.098	1.00
96_F	99_D	1.096	1.00
26_A	30_E	1.095	1.00
108_T	122_T	1.081	1.00
42_H	60_G	1.069	1.00
69_G	73_P	1.064	1.00
105_S	123_M	1.058	1.00
30_E	33_D	1.039	1.00
107_V	123_M	1.037	1.00
28_N	58_V	1.026	1.00
30_E	34_M	1.014	1.00
103_V	125_V	1.007	1.00
44_D	47_F	1.001	1.00
113_T	118_R	0.983	1.00
16_E	102_R	0.947	1.00
12_G	106_T	0.938	1.00
26_A	33_D	0.936	1.00
99_D	131_N	0.929	1.00
61_L	68_V	0.928	1.00
102_R	130_V	0.921	1.00
123_M	145_V	0.920	1.00
96_F	133_E	0.918	1.00
61_L	86_Y	0.898	1.00
78_G	81_V	0.894	1.00
99_D	133_E	0.893	1.00
107_V	121_V	0.891	1.00
111_R	122_T	0.873	1.00
61_L	64_M	0.859	1.00
22_T	98_G	0.853	1.00
89_V	141_F	0.852	1.00
38_Q	43_L	0.849	1.00
113_T	116_G	0.843	1.00
9_F	121_V	0.842	1.00
86_Y	89_V	0.842	1.00
47_F	51_T	0.840	1.00
86_Y	143_R	0.839	1.00
102_R	134_D	0.837	1.00
55_E	97_H	0.834	1.00
131_N	138_V	0.823	1.00
35_T	59_N	0.813	1.00
57_I	96_F	0.812	1.00
113_T	120_V	0.811	1.00
29_Q	43_L	0.810	1.00
59_N	62_Y	0.781	1.00
21_R	66_L	0.772	1.00
27_D	36_M	0.763	1.00
67_A	139_C	0.748	1.00
56_R	97_H	0.747	1.00
9_F	13_E	0.743	1.00
21_R	62_Y	0.733	0.99
13_E	110_K	0.731	0.99
37_N	59_N	0.731	0.99
47_F	50_E	0.730	0.99
61_L	91_H	0.730	0.99
137_L	140_E	0.728	0.99
87_D	90_E	0.727	0.99
92_P	137_L	0.724	0.99
40_P	51_T	0.723	0.99
27_D	30_E	0.722	0.99
40_P	44_D	0.715	0.99
105_S	125_V	0.714	0.99
37_N	42_H	0.702	0.99
67_A	125_V	0.689	0.99
49_S	54_G	0.686	0.99
67_A	141_F	0.670	0.99
82_A	85_S	0.670	0.99
68_V	72_I	0.668	0.99
130_V	134_D	0.666	0.99
71_T	143_R	0.664	0.99
39_Q	47_F	0.663	0.99
130_V	133_E	0.652	0.99
61_L	65_S	0.652	0.99
22_T	27_D	0.648	0.99
42_H	59_N	0.647	0.99
49_S	55_E	0.646	0.99
92_P	139_C	0.641	0.99
9_F	107_V	0.640	0.99
52_Q	57_I	0.638	0.99
53_F	94_P	0.630	0.98
110_K	119_G	0.629	0.98
32_C	37_N	0.629	0.98
116_G	119_G	0.629	0.98
64_M	91_H	0.627	0.98
36_M	69_G	0.625	0.98
81_V	84_L	0.620	0.98
119_G	125_V	0.620	0.98
98_G	101_I	0.618	0.98
35_T	42_H	0.618	0.98
74_E	105_S	0.617	0.98
113_T	146_L	0.615	0.98
84_L	146_L	0.612	0.98
61_L	143_R	0.611	0.98
29_Q	45_A	0.606	0.98
85_S	90_E	0.598	0.98
87_D	144_T	0.598	0.98
7_E	110_K	0.597	0.98
64_M	139_C	0.595	0.98
49_S	52_Q	0.592	0.98
118_R	146_L	0.589	0.98
71_T	123_M	0.586	0.98
129_A	139_C	0.583	0.97
85_S	144_T	0.583	0.97
9_F	110_K	0.572	0.97
36_M	62_Y	0.569	0.97
54_G	96_F	0.568	0.97
17_H	21_R	0.566	0.97
11_V	108_T	0.564	0.97
31_F	65_S	0.563	0.97
57_I	94_P	0.562	0.97
51_T	54_G	0.554	0.97
21_R	69_G	0.552	0.97
93_A	138_V	0.551	0.96
32_C	38_Q	0.547	0.96
52_Q	55_E	0.547	0.96
72_I	75_T	0.546	0.96
18_A	70_I	0.545	0.96
27_D	34_M	0.544	0.96
25_E	97_H	0.539	0.96
93_A	133_E	0.535	0.96
93_A	131_N	0.534	0.96
131_N	134_D	0.534	0.96
29_Q	38_Q	0.528	0.96
64_M	68_V	0.528	0.96
101_I	131_N	0.525	0.95
104_Q	129_A	0.524	0.95
100_T	132_R	0.522	0.95
102_R	129_A	0.522	0.95
71_T	125_V	0.520	0.95
85_S	89_V	0.518	0.95
23_V	95_V	0.513	0.95
67_A	143_R	0.508	0.95
41_L	47_F	0.507	0.94
99_D	138_V	0.507	0.94
70_I	101_I	0.505	0.94
29_Q	56_R	0.504	0.94
31_F	61_L	0.501	0.94
24_S	29_Q	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1q6wA	6	0.9236	100	0.214	Contact Map
2bi0A	3	0.9682	100	0.236	Contact Map
3exzA	2	0.9172	100	0.246	Contact Map
4e3eA	3	0.9299	100	0.253	Contact Map
4ffuA	6	0.9554	100	0.258	Contact Map
4rv2B	2	0.8662	100	0.302	Contact Map
2c2iA	2	0.9172	100	0.303	Contact Map
3ir3A	2	0.8089	100	0.304	Contact Map
4v12A	2	0.8726	100	0.306	Contact Map
3k67A	2	0.8344	100	0.325	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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