Q9HRM3 - HALSA - GREMLIN Contacts

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Q9HRM3 - N5-carboxyaminoimidazole ribonucleotide synthase

UniProt:	Q9HRM3	Sequences: MLADAASPLGVDVIVLDPTPDCPASQPATDHIRADFDDPDGVRELAARADVLTYEIELADPDVLADAAEAHEVAVHPSPETLRTIQDKLVQNRALADAGIPVPAFRAVDDAADLRAAFEELGAPLMLKRRTGGYDGSGNAPVDSVADARAEFGGDLGGFVAEELVDFERELSVIAARGDAETATFPVAENLHEAEILRESVVPARTSPAVREDATGVAADVLDALDGRGVFGVELFAVDGRVLVNEIAPRPHNSGHYTIEGCRTSQFEQCIRAVLGLPLGDTTLREPTVMANLIGDPDVDPHPATIAGVPAAFRDAGVALHWYGKRQLRPHRKMAHVTVSGGDDRLARARAARDAVSFTDTHHS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	364 (350)
Sequences:	23036 (12805)
Seq/√Len:	684.4

ECOLI - PURT ACCC PUR2 PURK RIMK DDLB CARB DDLA
BACSU - PURT PURK ACCC2 ACCC1 BACD PUR2 DDL CARY PYC CARB
HALSA - Q9HRM3 Q9HQ67 Q9HPP8 CARB Q9HSS5
SULSO - PURT PURK Q97VY6 Q7LXR2 CARB Q7LXR0 LYSX

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
119_E	145_V	3.691	1.00
104_A	163_E	3.276	1.00
115_R	149_R	3.181	1.00
144_S	147_D	3.181	1.00
110_D	113_D	2.954	1.00
216_G	220_D	2.867	1.00
238_V	241_R	2.804	1.00
38_D	41_G	2.665	1.00
123_A	145_V	2.652	1.00
341_G	346_L	2.627	1.00
343_D	346_L	2.519	1.00
219_A	223_D	2.511	1.00
106_R	120_E	2.494	1.00
217_V	220_D	2.405	1.00
272_R	277_L	2.398	1.00
97_D	224_A	2.256	1.00
66_D	70_A	2.209	1.00
66_D	83_R	2.209	1.00
143_D	147_D	2.190	1.00
213_D	241_R	2.135	1.00
95_L	221_V	2.126	1.00
212_E	216_G	2.070	1.00
117_A	120_E	2.021	1.00
8_P	268_E	2.019	1.00
47_A	71_H	2.017	1.00
177_R	182_T	1.991	1.00
207_S	210_V	1.987	1.00
61_P	86_Q	1.972	1.00
90_V	93_R	1.960	1.00
208_P	212_E	1.959	1.00
67_A	71_H	1.942	1.00
93_R	97_D	1.938	1.00
141_P	164_L	1.938	1.00
19_T	33_R	1.926	1.00
263_R	283_T	1.905	1.00
6_A	13_V	1.898	1.00
117_A	121_L	1.889	1.00
145_V	149_R	1.887	1.00
268_E	272_R	1.882	1.00
263_R	285_R	1.873	1.00
83_R	90_V	1.863	1.00
342_G	346_L	1.856	1.00
32_I	45_L	1.799	1.00
5_A	268_E	1.773	1.00
202_V	261_G	1.769	1.00
43_R	47_A	1.758	1.00
7_S	29_T	1.752	1.00
143_D	166_D	1.746	1.00
111_A	115_R	1.741	1.00
217_V	242_V	1.741	1.00
78_S	81_T	1.720	1.00
115_R	145_V	1.710	1.00
176_A	269_Q	1.691	1.00
43_R	71_H	1.683	1.00
213_D	216_G	1.681	1.00
111_A	149_R	1.678	1.00
322_W	325_K	1.676	1.00
89_L	93_R	1.672	1.00
210_V	213_D	1.645	1.00
52_L	73_V	1.644	1.00
93_R	96_A	1.641	1.00
12_D	30_D	1.637	1.00
41_G	44_E	1.636	1.00
84_T	94_A	1.632	1.00
39_P	67_A	1.630	1.00
89_L	107_A	1.617	1.00
92_N	162_E	1.608	1.00
109_D	113_D	1.588	1.00
94_A	224_A	1.581	1.00
220_D	223_D	1.580	1.00
98_A	224_A	1.576	1.00
291_A	351_A	1.573	1.00
84_T	90_V	1.557	1.00
212_E	215_T	1.557	1.00
40_D	67_A	1.545	1.00
106_R	117_A	1.538	1.00
125_L	161_A	1.537	1.00
96_A	104_A	1.517	1.00
304_A	307_A	1.497	1.00
116_A	120_E	1.489	1.00
176_A	230_V	1.476	1.00
94_A	97_D	1.472	1.00
39_P	43_R	1.469	1.00
25_S	31_H	1.468	1.00
210_V	237_A	1.467	1.00
115_R	119_E	1.450	1.00
130_R	158_G	1.449	1.00
178_G	181_E	1.446	1.00
171_L	237_A	1.446	1.00
87_D	130_R	1.437	1.00
325_K	328_L	1.427	1.00
118_F	123_A	1.420	1.00
94_A	98_A	1.418	1.00
260_E	338_T	1.411	1.00
9_L	272_R	1.407	1.00
215_T	219_A	1.397	1.00
163_E	243_L	1.385	1.00
260_E	340_S	1.381	1.00
111_A	152_F	1.380	1.00
80_E	84_T	1.375	1.00
95_L	244_V	1.368	1.00
315_D	318_V	1.367	1.00
69_E	78_S	1.361	1.00
345_R	349_A	1.360	1.00
165_V	245_N	1.350	1.00
116_A	119_E	1.336	1.00
175_A	222_L	1.336	1.00
176_A	273_A	1.326	1.00
93_R	105_F	1.325	1.00
44_E	47_A	1.315	1.00
213_D	217_V	1.311	1.00
101_P	241_R	1.295	1.00
118_F	125_L	1.288	1.00
317_G	350_R	1.281	1.00
112_A	116_A	1.279	1.00
69_E	79_P	1.271	1.00
67_A	70_A	1.267	1.00
68_A	73_V	1.267	1.00
123_A	144_S	1.266	1.00
108_V	117_A	1.265	1.00
91_Q	95_L	1.260	1.00
321_H	324_G	1.256	1.00
173_V	214_A	1.248	1.00
68_A	75_V	1.247	1.00
109_D	158_G	1.244	1.00
11_V	275_L	1.238	1.00
206_T	210_V	1.235	1.00
175_A	218_A	1.224	1.00
92_N	102_V	1.223	1.00
113_D	116_A	1.220	1.00
294_I	332_R	1.218	1.00
89_L	130_R	1.218	1.00
341_G	350_R	1.213	1.00
352_A	356_V	1.213	1.00
96_A	102_V	1.208	1.00
291_A	336_H	1.191	1.00
175_A	231_F	1.184	1.00
85_I	247_I	1.183	1.00
126_M	141_P	1.180	1.00
324_G	327_Q	1.177	1.00
348_R	352_A	1.177	1.00
182_T	219_A	1.174	1.00
208_P	211_R	1.170	1.00
346_L	350_R	1.161	1.00
211_R	215_T	1.159	1.00
112_A	115_R	1.144	1.00
74_A	275_L	1.144	1.00
101_P	217_V	1.139	1.00
237_A	242_V	1.138	1.00
107_A	158_G	1.132	1.00
175_A	233_V	1.131	1.00
104_A	121_L	1.130	1.00
126_M	164_L	1.128	1.00
184_T	215_T	1.127	1.00
46_A	73_V	1.111	1.00
64_L	68_A	1.109	1.00
140_A	151_E	1.108	1.00
287_P	342_G	1.107	1.00
78_S	228_R	1.101	1.00
166_D	239_D	1.093	1.00
350_R	353_R	1.088	1.00
63_V	66_D	1.086	1.00
169_R	189_E	1.084	1.00
209_A	213_D	1.084	1.00
341_G	347_A	1.080	1.00
264_T	269_Q	1.067	1.00
207_S	240_G	1.062	1.00
96_A	105_F	1.062	1.00
114_L	148_A	1.059	1.00
339_V	351_A	1.055	1.00
269_Q	272_R	1.053	1.00
146_A	150_A	1.049	1.00
353_R	356_V	1.045	1.00
123_A	148_A	1.043	1.00
17_D	22_C	1.042	1.00
337_V	354_D	1.036	1.00
222_L	225_L	1.035	1.00
259_I	338_T	1.031	1.00
349_A	353_R	1.029	1.00
5_A	8_P	1.027	1.00
104_A	120_E	1.027	1.00
218_A	233_V	1.025	1.00
45_L	49_A	1.024	1.00
222_L	231_F	1.021	1.00
272_R	275_L	1.018	1.00
193_E	198_R	1.016	1.00
40_D	44_E	1.012	1.00
119_E	149_R	1.010	1.00
233_V	247_I	1.005	1.00
121_L	125_L	1.003	1.00
9_L	268_E	1.002	1.00
285_R	340_S	1.000	1.00
147_D	150_A	0.996	1.00
118_F	148_A	0.990	1.00
6_A	271_I	0.986	1.00
319_A	322_W	0.986	1.00
15_V	28_A	0.983	1.00
177_R	223_D	0.983	1.00
186_P	202_V	0.981	1.00
80_E	83_R	0.979	1.00
52_L	68_A	0.976	1.00
108_V	114_L	0.971	1.00
114_L	152_F	0.970	1.00
66_D	79_P	0.969	1.00
186_P	211_R	0.966	1.00
189_E	205_R	0.963	1.00
218_A	235_L	0.963	1.00
318_V	354_D	0.961	1.00
58_L	62_D	0.951	1.00
173_V	218_A	0.950	1.00
251_P	266_Q	0.950	1.00
271_I	275_L	0.947	1.00
294_I	355_A	0.945	1.00
181_E	223_D	0.944	1.00
177_R	222_L	0.943	1.00
166_D	238_V	0.941	1.00
216_G	219_A	0.937	1.00
125_L	142_V	0.934	1.00
309_V	324_G	0.933	1.00
324_G	328_L	0.932	1.00
6_A	11_V	0.930	1.00
43_R	70_A	0.927	1.00
339_V	354_D	0.925	1.00
85_I	225_L	0.922	1.00
19_T	22_C	0.919	1.00
180_A	223_D	0.918	1.00
17_D	31_H	0.918	1.00
46_A	52_L	0.913	1.00
43_R	67_A	0.912	1.00
65_A	68_A	0.912	1.00
165_V	243_L	0.910	1.00
221_V	224_A	0.908	1.00
15_V	26_Q	0.904	1.00
220_D	224_A	0.901	1.00
142_V	151_E	0.899	1.00
127_L	151_E	0.897	1.00
173_V	215_T	0.896	1.00
127_L	159_F	0.895	1.00
100_I	244_V	0.894	1.00
12_D	29_T	0.893	1.00
7_S	13_V	0.891	1.00
126_M	139_N	0.890	1.00
318_V	339_V	0.877	1.00
87_D	131_T	0.877	1.00
236_F	245_N	0.871	1.00
179_D	278_P	0.870	1.00
14_I	30_D	0.864	1.00
113_D	117_A	0.863	1.00
152_F	159_F	0.860	1.00
58_L	61_P	0.860	1.00
81_T	226_D	0.857	1.00
146_A	149_R	0.857	1.00
16_L	34_A	0.851	1.00
63_V	67_A	0.850	1.00
89_L	158_G	0.848	1.00
65_A	69_E	0.843	1.00
192_H	197_L	0.843	1.00
319_A	323_Y	0.841	1.00
66_D	80_E	0.836	1.00
165_V	238_V	0.832	1.00
308_G	311_A	0.829	1.00
176_A	185_F	0.827	1.00
127_L	142_V	0.826	1.00
69_E	228_R	0.822	1.00
53_T	270_C	0.820	1.00
213_D	242_V	0.816	1.00
131_T	156_L	0.815	1.00
182_T	223_D	0.815	1.00
339_V	347_A	0.811	1.00
78_S	226_D	0.810	1.00
214_A	242_V	0.810	1.00
221_V	225_L	0.804	1.00
65_A	75_V	0.802	1.00
57_E	60_D	0.801	1.00
96_A	106_R	0.799	1.00
209_A	212_E	0.798	1.00
34_A	45_L	0.790	1.00
221_V	247_I	0.790	1.00
154_G	157_G	0.789	1.00
289_V	347_A	0.789	1.00
303_P	306_I	0.781	1.00
5_A	9_L	0.781	1.00
346_L	349_A	0.781	1.00
173_V	187_V	0.775	1.00
42_V	68_A	0.774	1.00
14_I	32_I	0.774	1.00
94_A	225_L	0.772	1.00
65_A	83_R	0.770	1.00
35_D	38_D	0.769	1.00
321_H	325_K	0.766	1.00
118_F	122_G	0.764	1.00
68_A	71_H	0.758	1.00
261_G	288_T	0.758	1.00
314_R	318_V	0.757	1.00
270_C	274_V	0.754	1.00
191_L	199_E	0.752	1.00
106_R	113_D	0.751	1.00
163_E	241_R	0.751	1.00
313_F	347_A	0.749	1.00
228_R	273_A	0.748	1.00
101_P	243_L	0.746	1.00
182_T	222_L	0.746	1.00
169_R	237_A	0.745	1.00
87_D	90_V	0.743	1.00
345_R	348_R	0.741	1.00
315_D	350_R	0.741	1.00
89_L	160_V	0.739	1.00
142_V	148_A	0.737	1.00
246_E	250_R	0.735	1.00
76_H	271_I	0.734	1.00
87_D	158_G	0.733	1.00
217_V	235_L	0.732	1.00
175_A	184_T	0.729	1.00
127_L	161_A	0.729	1.00
184_T	219_A	0.724	1.00
174_I	230_V	0.724	1.00
66_D	69_E	0.723	1.00
117_A	161_A	0.721	1.00
22_C	25_S	0.721	1.00
198_R	294_I	0.721	1.00
289_V	348_R	0.719	1.00
206_T	211_R	0.719	1.00
187_V	204_A	0.719	1.00
287_P	340_S	0.714	1.00
88_K	128_K	0.712	1.00
193_E	196_I	0.712	1.00
179_D	228_R	0.711	1.00
199_E	291_A	0.711	1.00
64_L	67_A	0.710	1.00
181_E	278_P	0.710	1.00
183_A	282_T	0.707	1.00
93_R	107_A	0.707	1.00
63_V	68_A	0.706	1.00
177_R	228_R	0.705	1.00
320_L	324_G	0.705	1.00
259_I	265_S	0.701	1.00
173_V	235_L	0.701	1.00
121_L	163_E	0.701	1.00
171_L	214_A	0.699	1.00
90_V	94_A	0.698	1.00
34_A	41_G	0.696	1.00
192_H	196_I	0.695	1.00
306_I	309_V	0.693	1.00
201_V	344_D	0.692	1.00
63_V	83_R	0.691	1.00
351_A	355_A	0.689	1.00
178_G	279_L	0.687	1.00
127_L	152_F	0.685	1.00
311_A	314_R	0.684	1.00
9_L	271_I	0.683	1.00
187_V	211_R	0.683	1.00
111_A	148_A	0.682	1.00
188_A	204_A	0.678	1.00
293_L	296_D	0.677	1.00
171_L	235_L	0.676	1.00
269_Q	280_G	0.676	1.00
28_A	31_H	0.669	1.00
114_L	161_A	0.669	1.00
214_A	217_V	0.669	1.00
46_A	68_A	0.668	1.00
302_H	305_T	0.664	1.00
173_V	184_T	0.663	1.00
110_D	152_F	0.663	1.00
174_I	232_G	0.662	1.00
47_A	70_A	0.658	1.00
79_P	83_R	0.658	1.00
227_G	231_F	0.657	1.00
84_T	97_D	0.655	1.00
185_F	262_C	0.654	1.00
174_I	188_A	0.654	1.00
238_V	243_L	0.654	1.00
240_G	243_L	0.649	1.00
320_L	337_V	0.648	1.00
320_L	335_A	0.647	1.00
39_P	62_D	0.645	1.00
185_F	266_Q	0.644	1.00
41_G	45_L	0.644	1.00
51_V	274_V	0.644	1.00
323_Y	328_L	0.644	1.00
130_R	160_V	0.644	1.00
39_P	64_L	0.642	1.00
11_V	50_D	0.641	1.00
69_E	80_E	0.640	1.00
188_A	200_S	0.640	1.00
111_A	114_L	0.635	1.00
292_N	295_G	0.634	1.00
217_V	221_V	0.634	1.00
262_C	284_L	0.633	1.00
40_D	43_R	0.632	1.00
209_A	240_G	0.631	1.00
347_A	351_A	0.631	1.00
290_M	348_R	0.631	1.00
175_A	182_T	0.629	1.00
189_E	204_A	0.629	1.00
233_V	244_V	0.628	1.00
124_P	164_L	0.628	1.00
27_P	31_H	0.625	1.00
69_E	75_V	0.625	1.00
178_G	276_G	0.624	1.00
115_R	118_F	0.623	1.00
218_A	222_L	0.622	1.00
202_V	257_Y	0.622	1.00
107_A	130_R	0.620	1.00
186_P	284_L	0.620	1.00
46_A	49_A	0.619	1.00
99_G	220_D	0.618	1.00
147_D	151_E	0.618	1.00
199_E	202_V	0.618	1.00
142_V	147_D	0.615	1.00
81_T	228_R	0.614	1.00
257_Y	260_E	0.614	1.00
16_L	42_V	0.612	1.00
181_E	280_G	0.612	1.00
179_D	276_G	0.611	1.00
323_Y	327_Q	0.611	1.00
344_D	348_R	0.610	1.00
312_A	322_W	0.609	1.00
193_E	197_L	0.608	1.00
123_A	143_D	0.603	1.00
105_F	162_E	0.598	1.00
230_V	251_P	0.596	1.00
210_V	240_G	0.595	1.00
80_E	226_D	0.595	1.00
227_G	249_P	0.593	1.00
163_E	238_V	0.593	1.00
204_A	211_R	0.592	1.00
189_E	201_V	0.589	1.00
272_R	276_G	0.588	1.00
296_D	307_A	0.588	1.00
207_S	237_A	0.586	1.00
168_E	239_D	0.585	1.00
288_T	344_D	0.584	1.00
118_F	121_L	0.583	1.00
13_V	29_T	0.581	1.00
171_L	206_T	0.580	1.00
266_Q	270_C	0.577	1.00
192_H	195_E	0.577	1.00
42_V	52_L	0.576	1.00
180_A	228_R	0.576	1.00
186_P	261_G	0.576	1.00
171_L	204_A	0.575	1.00
82_L	249_P	0.575	1.00
95_L	100_I	0.573	1.00
260_E	321_H	0.570	1.00
269_Q	282_T	0.569	1.00
71_H	74_A	0.566	1.00
14_I	48_R	0.566	1.00
303_P	307_A	0.566	1.00
118_F	152_F	0.565	1.00
143_D	164_L	0.564	1.00
43_R	73_V	0.562	1.00
315_D	353_R	0.562	1.00
81_T	85_I	0.562	1.00
95_L	247_I	0.562	1.00
16_L	45_L	0.560	1.00
92_N	105_F	0.559	1.00
307_A	310_P	0.558	1.00
297_P	304_A	0.554	1.00
256_H	336_H	0.554	1.00
312_A	320_L	0.554	1.00
119_E	123_A	0.553	1.00
306_I	310_P	0.552	1.00
306_I	311_A	0.549	1.00
256_H	290_M	0.548	1.00
210_V	242_V	0.547	1.00
343_D	347_A	0.547	1.00
47_A	73_V	0.545	1.00
188_A	202_V	0.545	1.00
74_A	228_R	0.545	1.00
80_E	90_V	0.545	1.00
17_D	27_P	0.544	1.00
187_V	206_T	0.542	1.00
271_I	274_V	0.542	1.00
91_Q	244_V	0.542	1.00
14_I	49_A	0.541	1.00
275_L	278_P	0.541	1.00
220_D	225_L	0.541	1.00
165_V	168_E	0.541	1.00
100_I	217_V	0.540	1.00
270_C	273_A	0.539	1.00
103_P	245_N	0.538	1.00
323_Y	326_R	0.537	1.00
92_N	96_A	0.534	1.00
81_T	84_T	0.533	1.00
186_P	258_T	0.530	1.00
108_V	113_D	0.529	1.00
260_E	319_A	0.528	1.00
172_S	188_A	0.526	1.00
213_D	220_D	0.526	1.00
177_R	180_A	0.525	1.00
141_P	195_E	0.524	1.00
103_P	165_V	0.524	1.00
311_A	326_R	0.523	1.00
20_P	33_R	0.523	1.00
92_N	103_P	0.522	1.00
169_R	204_A	0.522	1.00
30_D	33_R	0.520	0.99
118_F	145_V	0.520	0.99
36_F	39_P	0.520	0.99
106_R	121_L	0.519	0.99
290_M	295_G	0.518	0.99
264_T	280_G	0.516	0.99
349_A	352_A	0.515	0.99
39_P	66_D	0.515	0.99
164_L	236_F	0.514	0.99
88_K	139_N	0.514	0.99
177_R	226_D	0.513	0.99
215_T	220_D	0.512	0.99
122_G	145_V	0.510	0.99
315_D	354_D	0.509	0.99
115_R	148_A	0.508	0.99
257_Y	289_V	0.508	0.99
95_L	102_V	0.507	0.99
50_D	74_A	0.507	0.99
9_L	277_L	0.506	0.99
150_A	154_G	0.506	0.99
201_V	204_A	0.505	0.99
140_A	150_A	0.505	0.99
291_A	338_T	0.504	0.99
112_A	149_R	0.503	0.99
265_S	268_E	0.503	0.99
65_A	79_P	0.502	0.99
127_L	148_A	0.500	0.99
18_P	25_S	0.500	0.99
339_V	350_R	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2dwcA	4	0.9725	100	0.279	Contact Map
4dimA	1	0.967	100	0.279	Contact Map
1kjqA	2	0.967	100	0.286	Contact Map
3ax6A	2	0.9396	100	0.294	Contact Map
4mamA	2	0.9451	100	0.297	Contact Map
3aw8A	2	0.9478	100	0.298	Contact Map
4e4tA	2	0.9835	100	0.301	Contact Map
4rcnA	6	0.9231	100	0.302	Contact Map
3votA	1	0.9698	100	0.308	Contact Map
3orqA	2	0.9505	100	0.311	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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