Q9HRM1 - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q9HRM1 - NADH dehydrogenase/oxidoreductase-like protein

UniProt:	Q9HRM1	Sequences: MNPWIAIGMLALVSVLIPAGMLSVSSLIRPSVSEQGKRATYESAEVPTGNARLQFNTQYYMVALLFLVFDIETVLIFPWTVIYRDALAMDGIGLTNVLAPMLVFIGILVVGLAWAWRKGVVQWMRTPAHEQRTTHE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	136 (112)
Sequences:	4777 (2307)
Seq/√Len:	218.0

ECOLI - NUOA
HALSA - Q9HRM1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
79_W	101_M	4.757	1.00
100_P	115_A	4.258	1.00
114_W	117_R	3.758	1.00
17_I	21_M	2.667	1.00
25_S	29_R	2.346	1.00
109_V	113_A	2.320	1.00
16_L	20_G	2.303	1.00
33_S	38_R	2.271	1.00
28_I	31_S	2.258	1.00
21_M	24_V	2.216	1.00
26_S	31_S	2.080	1.00
58_Q	124_M	2.046	1.00
98_L	102_L	2.030	1.00
107_I	115_A	1.969	1.00
114_W	118_K	1.933	1.00
36_G	39_A	1.849	1.00
92_I	97_V	1.849	1.00
107_I	111_G	1.833	1.00
12_L	16_L	1.735	1.00
77_F	80_T	1.709	1.00
59_Y	62_V	1.684	1.00
66_F	70_D	1.667	1.00
92_I	95_T	1.616	1.00
19_A	23_S	1.578	1.00
34_E	39_A	1.564	1.00
99_A	103_V	1.550	1.00
99_A	102_L	1.520	1.00
37_K	111_G	1.506	1.00
39_A	46_V	1.499	1.00
15_V	19_A	1.463	1.00
75_L	118_K	1.415	1.00
104_F	108_L	1.369	1.00
39_A	45_E	1.325	1.00
11_A	14_S	1.315	1.00
24_V	28_I	1.308	1.00
39_A	47_P	1.279	1.00
29_R	32_V	1.251	1.00
95_T	100_P	1.240	1.00
95_T	99_A	1.233	1.00
66_F	69_F	1.224	1.00
97_V	101_M	1.161	1.00
76_I	101_M	1.148	1.00
6_A	9_M	1.131	1.00
74_V	77_F	1.109	1.00
73_T	115_A	1.090	1.00
82_I	85_D	1.082	1.00
115_A	121_V	1.067	1.00
12_L	15_V	1.031	1.00
39_A	43_S	1.019	1.00
23_S	27_L	1.016	1.00
102_L	105_I	1.004	1.00
109_V	115_A	0.991	1.00
79_W	97_V	0.986	1.00
71_I	74_V	0.986	1.00
36_G	45_E	0.971	1.00
63_A	66_F	0.956	1.00
116_W	123_W	0.954	1.00
40_T	56_N	0.928	0.99
25_S	28_I	0.904	0.99
95_T	98_L	0.901	0.99
11_A	15_V	0.899	0.99
18_P	76_I	0.890	0.99
8_G	19_A	0.880	0.99
54_Q	60_Y	0.879	0.99
113_A	117_R	0.873	0.99
113_A	116_W	0.859	0.99
58_Q	80_T	0.841	0.99
28_I	32_V	0.840	0.99
84_R	112_L	0.839	0.99
104_F	113_A	0.834	0.99
56_N	59_Y	0.822	0.99
45_E	56_N	0.821	0.99
102_L	106_G	0.819	0.99
56_N	60_Y	0.814	0.99
72_E	108_L	0.813	0.99
50_N	63_A	0.806	0.99
112_L	121_V	0.804	0.99
15_V	99_A	0.797	0.98
23_S	26_S	0.794	0.98
61_M	121_V	0.787	0.98
46_V	49_G	0.786	0.98
25_S	31_S	0.780	0.98
38_R	41_Y	0.766	0.98
97_V	100_P	0.752	0.98
67_L	110_V	0.744	0.98
9_M	38_R	0.741	0.97
8_G	18_P	0.735	0.97
76_I	120_V	0.735	0.97
45_E	59_Y	0.725	0.97
10_L	74_V	0.721	0.97
37_K	71_I	0.718	0.97
16_L	93_G	0.718	0.97
18_P	22_L	0.717	0.97
54_Q	64_L	0.716	0.97
77_F	97_V	0.714	0.97
64_L	124_M	0.710	0.97
62_V	115_A	0.705	0.97
14_S	119_G	0.689	0.96
22_L	25_S	0.685	0.96
106_G	109_V	0.683	0.96
80_T	84_R	0.683	0.96
35_Q	117_R	0.682	0.96
56_N	64_L	0.679	0.96
63_A	114_W	0.673	0.96
53_L	65_L	0.670	0.95
61_M	108_L	0.666	0.95
103_V	110_V	0.663	0.95
73_T	112_L	0.659	0.95
95_T	110_V	0.656	0.95
13_V	16_L	0.656	0.95
65_L	115_A	0.652	0.95
17_I	20_G	0.643	0.94
77_F	81_V	0.642	0.94
103_V	107_I	0.641	0.94
13_V	17_I	0.634	0.94
62_V	66_F	0.634	0.94
43_S	62_V	0.631	0.94
74_V	80_T	0.631	0.94
108_L	111_G	0.627	0.94
51_A	55_F	0.619	0.93
79_W	98_L	0.617	0.93
95_T	106_G	0.616	0.93
9_M	23_S	0.612	0.93
20_G	23_S	0.606	0.92
65_L	71_I	0.604	0.92
43_S	54_Q	0.603	0.92
74_V	97_V	0.602	0.92
116_W	122_Q	0.599	0.92
30_P	71_I	0.598	0.92
93_G	117_R	0.595	0.92
81_V	84_R	0.594	0.92
52_R	71_I	0.590	0.91
10_L	18_P	0.590	0.91
49_G	53_L	0.582	0.91
8_G	12_L	0.580	0.91
76_I	103_V	0.575	0.90
8_G	83_Y	0.571	0.90
19_A	33_S	0.570	0.90
77_F	104_F	0.569	0.90
38_R	106_G	0.569	0.90
58_Q	63_A	0.568	0.90
60_Y	123_W	0.563	0.89
22_L	97_V	0.553	0.89
120_V	124_M	0.553	0.89
41_Y	114_W	0.544	0.88
75_L	102_L	0.539	0.87
6_A	10_L	0.534	0.87
24_V	84_R	0.532	0.87
75_L	101_M	0.527	0.86
10_L	17_I	0.527	0.86
75_L	104_F	0.525	0.86
52_R	62_V	0.525	0.86
45_E	71_I	0.515	0.85
50_N	53_L	0.514	0.85
22_L	26_S	0.514	0.85
15_V	18_P	0.514	0.85
63_A	120_V	0.513	0.85
14_S	18_P	0.512	0.84
67_L	70_D	0.511	0.84
17_I	28_I	0.510	0.84
45_E	115_A	0.510	0.84
9_M	12_L	0.510	0.84
68_V	72_E	0.509	0.84
37_K	68_V	0.505	0.84
45_E	52_R	0.504	0.84
6_A	71_I	0.503	0.83
11_A	65_L	0.502	0.83
73_T	124_M	0.500	0.83

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3rkoA	1	0.6985	100	0.132	Contact Map
4he8A	1	0.6544	100	0.193	Contact Map
4tllB	2	0.2206	16.9	0.934	Contact Map
4djkA	2	0.7868	11.5	0.939	Contact Map
3mk7C	2	0.6912	9	0.942	Contact Map
3aqpA	1	0.7721	7.7	0.943	Contact Map
3wajA	1	0.6765	4.8	0.948	Contact Map
2kv5A	1	0.2426	3.8	0.951	Contact Map
2m20A	2	0.3382	3.7	0.951	Contact Map
4qinA	2	0.9338	3.6	0.952	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0054 seconds.