Q9HRB9 - HALSA - GREMLIN Contacts

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Q9HRB9 - Phosphate regulatory protein homolog

UniProt:	Q9HRB9	Sequences: MGTRKVQQLGPSTLAMTLPAEWARSQDVVKGDEVTVREGGRGSLTVTPASARQGETEATIHATDFDADAVERAIVGQYVLGRRIIHVESEAALDSAHINAVYSAETQLMGLGVVEETPARITIRCSVDPADFDLNNLLERLENTGSTMRGEAVKALAHGNPDLAQRALNRERQANKIFVLLLRLIFTAYHDPGLARTVGLDEGFPLVGYRSVAKNLELVADNAEDIAEIVMATDGHTLDVDQATMRRIREFTDAVDDVAASAVSAAVNRDYDATVAVREQFSAIEDREADILADLPEMNNADLLEAREVLVSLQQSAQYSMRNAEIAANLALNEQSAHTTLT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	342 (323)
Sequences:	348 (272)
Seq/√Len:	15.1

HALSA - Q9HRB9 Q9HS09
SULSO - Q980F5 Q7LXS0 Q97VK4 Q97ZI3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
6_V	28_V	4.512	1.00
151_E	170_R	4.380	1.00
148_M	171_E	4.277	1.00
218_L	222_N	4.265	1.00
217_E	221_D	4.218	1.00
13_T	17_T	3.936	1.00
34_V	46_V	3.861	1.00
171_E	217_E	3.617	0.99
148_M	217_E	3.140	0.98
175_N	221_D	3.126	0.98
171_E	221_D	3.089	0.98
149_R	316_S	3.076	0.98
175_N	217_E	2.830	0.97
19_P	22_W	2.825	0.97
148_M	221_D	2.547	0.94
141_L	174_A	2.524	0.94
152_A	223_A	2.514	0.94
151_E	218_L	2.389	0.92
23_A	28_V	2.288	0.90
319_Y	325_E	2.277	0.90
5_K	14_L	2.251	0.90
87_V	113_V	2.246	0.90
173_Q	176_K	2.234	0.89
217_E	325_E	2.209	0.89
4_R	19_P	2.167	0.88
261_S	280_Q	2.142	0.87
8_Q	11_P	2.117	0.86
10_G	72_R	2.108	0.86
153_V	162_D	2.090	0.86
222_N	325_E	2.085	0.86
221_D	325_E	2.035	0.84
212_V	266_A	1.971	0.82
4_R	22_W	1.967	0.82
9_L	12_S	1.924	0.81
313_L	317_A	1.907	0.80
7_Q	13_T	1.886	0.79
129_P	180_L	1.869	0.78
218_L	325_E	1.860	0.78
7_Q	17_T	1.838	0.77
216_L	276_A	1.832	0.77
218_L	319_Y	1.830	0.77
155_A	164_A	1.825	0.77
10_G	20_A	1.786	0.75
11_P	14_L	1.766	0.74
171_E	175_N	1.754	0.74
315_Q	322_R	1.728	0.73
171_E	315_Q	1.725	0.73
127_V	214_K	1.706	0.72
9_L	218_L	1.694	0.71
14_L	21_E	1.688	0.71
131_D	176_K	1.660	0.69
180_L	184_L	1.641	0.69
136_N	140_R	1.635	0.68
99_N	140_R	1.622	0.68
2_G	5_K	1.619	0.67
4_R	7_Q	1.614	0.67
10_G	22_W	1.598	0.66
222_N	319_Y	1.594	0.66
10_G	31_G	1.578	0.65
27_D	121_I	1.575	0.65
13_T	23_A	1.569	0.65
12_S	208_G	1.560	0.65
207_V	210_R	1.542	0.64
9_L	319_Y	1.542	0.64
312_S	319_Y	1.533	0.63
15_A	218_L	1.520	0.62
9_L	15_A	1.520	0.62
164_A	167_A	1.512	0.62
7_Q	12_S	1.504	0.62
148_M	175_N	1.473	0.60
9_L	20_A	1.467	0.60
186_F	208_G	1.462	0.59
36_V	44_L	1.427	0.57
12_S	66_D	1.424	0.57
18_L	22_W	1.421	0.57
152_A	164_A	1.412	0.57
141_L	220_A	1.392	0.55
29_V	32_D	1.389	0.55
9_L	14_L	1.378	0.55
219_V	316_S	1.377	0.55
29_V	34_V	1.370	0.54
13_T	124_R	1.368	0.54
121_I	172_R	1.365	0.54
70_V	177_I	1.364	0.54
265_A	274_T	1.362	0.54
95_S	268_N	1.361	0.54
32_D	144_T	1.348	0.53
111_L	278_R	1.331	0.52
15_A	230_V	1.328	0.52
134_L	138_L	1.310	0.51
115_E	170_R	1.302	0.50
315_Q	319_Y	1.288	0.50
4_R	10_G	1.282	0.49
4_R	13_T	1.280	0.49
87_V	134_L	1.278	0.49
151_E	222_N	1.278	0.49
4_R	16_M	1.273	0.49
225_D	311_V	1.271	0.49
10_G	221_D	1.271	0.49
259_A	320_S	1.270	0.49
74_I	104_A	1.261	0.48
13_T	43_S	1.260	0.48
9_L	116_E	1.258	0.48
253_D	276_A	1.250	0.47
62_A	246_R	1.250	0.47
77_Q	127_V	1.243	0.47
18_L	43_S	1.229	0.46
153_V	291_I	1.228	0.46
32_D	329_N	1.217	0.46
222_N	315_Q	1.217	0.46
113_V	124_R	1.216	0.46
251_F	310_L	1.215	0.46
175_N	322_R	1.210	0.45
104_A	213_A	1.209	0.45
20_A	274_T	1.207	0.45
27_D	270_D	1.203	0.45
175_N	222_N	1.202	0.45
75_V	184_L	1.201	0.45
68_D	89_S	1.201	0.45
114_V	279_E	1.181	0.44
220_A	262_A	1.179	0.44
134_L	191_D	1.173	0.43
176_K	213_A	1.171	0.43
111_L	176_K	1.171	0.43
98_I	151_E	1.166	0.43
172_R	226_I	1.153	0.42
45_T	87_V	1.140	0.41
11_P	15_A	1.133	0.41
83_R	307_R	1.131	0.41
112_G	173_Q	1.125	0.41
171_E	218_L	1.110	0.40
104_A	214_K	1.109	0.40
156_L	230_V	1.105	0.39
116_E	275_V	1.096	0.39
141_L	217_E	1.090	0.39
7_Q	19_P	1.084	0.38
26_Q	127_V	1.082	0.38
10_G	19_P	1.081	0.38
166_R	170_R	1.081	0.38
155_A	265_A	1.078	0.38
312_S	328_A	1.072	0.38
6_V	14_L	1.062	0.37
195_A	198_V	1.054	0.37
31_G	108_L	1.049	0.36
320_S	324_A	1.039	0.36
3_T	44_L	1.038	0.36
7_Q	11_P	1.035	0.36
87_V	212_V	1.023	0.35
175_N	325_E	1.019	0.35
10_G	217_E	1.018	0.35
128_D	131_D	1.017	0.35
125_C	182_L	1.015	0.35
13_T	19_P	1.014	0.35
7_Q	16_M	1.005	0.34
188_A	194_L	1.002	0.34
78_Y	110_G	0.986	0.33
151_E	163_L	0.979	0.33
14_L	189_Y	0.974	0.33
112_G	175_N	0.972	0.33
18_L	120_R	0.964	0.32
16_M	29_V	0.962	0.32
255_V	277_V	0.960	0.32
9_L	325_E	0.959	0.32
76_G	175_N	0.956	0.32
185_I	322_R	0.956	0.32
108_L	210_R	0.956	0.32
221_D	322_R	0.954	0.32
79_V	179_V	0.949	0.31
116_E	325_E	0.947	0.31
145_G	223_A	0.930	0.31
153_V	252_T	0.928	0.30
89_S	116_E	0.922	0.30
8_Q	216_L	0.920	0.30
13_T	183_R	0.918	0.30
5_K	12_S	0.909	0.30
76_G	221_D	0.908	0.29
210_R	326_I	0.898	0.29
36_V	179_V	0.895	0.29
170_R	218_L	0.895	0.29
16_M	19_P	0.894	0.29
150_G	219_V	0.893	0.29
43_S	258_V	0.888	0.29
242_Q	246_R	0.887	0.29
102_Y	145_G	0.878	0.28
105_E	177_I	0.877	0.28
242_Q	318_Q	0.876	0.28
13_T	33_E	0.875	0.28
222_N	312_S	0.872	0.28
172_R	175_N	0.870	0.28
180_L	195_A	0.868	0.28
127_V	176_K	0.867	0.28
218_L	315_Q	0.863	0.27
325_E	329_N	0.862	0.27
148_M	325_E	0.860	0.27
105_E	215_N	0.857	0.27
223_A	227_A	0.856	0.27
246_R	294_D	0.856	0.27
173_Q	247_R	0.854	0.27
18_L	163_L	0.854	0.27
46_V	87_V	0.852	0.27
257_D	283_A	0.850	0.27
125_C	131_D	0.850	0.27
217_E	220_A	0.849	0.27
32_D	212_V	0.845	0.27
177_I	221_D	0.844	0.27
114_V	210_R	0.842	0.26
182_L	210_R	0.840	0.26
183_R	314_Q	0.839	0.26
187_T	194_L	0.839	0.26
17_T	22_W	0.837	0.26
62_A	66_D	0.837	0.26
171_E	322_R	0.837	0.26
10_G	175_N	0.836	0.26
76_G	217_E	0.836	0.26
311_V	318_Q	0.831	0.26
106_T	309_V	0.831	0.26
30_K	76_G	0.827	0.26
8_Q	13_T	0.824	0.26
12_S	48_P	0.823	0.26
7_Q	22_W	0.822	0.26
188_A	198_V	0.818	0.25
113_V	280_Q	0.818	0.25
7_Q	10_G	0.815	0.25
174_A	263_V	0.814	0.25
59_T	88_E	0.813	0.25
13_T	22_W	0.812	0.25
291_I	299_N	0.809	0.25
11_P	17_T	0.808	0.25
86_H	183_R	0.803	0.25
18_L	124_R	0.797	0.25
48_P	137_L	0.796	0.25
172_R	197_T	0.794	0.24
108_L	179_V	0.794	0.24
168_L	171_E	0.791	0.24
308_E	311_V	0.787	0.24
199_G	202_E	0.784	0.24
62_A	158_H	0.783	0.24
240_V	276_A	0.783	0.24
234_D	262_A	0.777	0.24
323_N	328_A	0.774	0.24
216_L	259_A	0.774	0.24
273_A	291_I	0.773	0.24
109_M	179_V	0.772	0.24
314_Q	318_Q	0.771	0.23
184_L	188_A	0.767	0.23
243_A	255_V	0.766	0.23
149_R	256_D	0.764	0.23
200_L	209_Y	0.764	0.23
217_E	319_Y	0.762	0.23
241_D	290_D	0.761	0.23
44_L	321_M	0.760	0.23
247_R	294_D	0.758	0.23
84_I	124_R	0.758	0.23
138_L	256_D	0.758	0.23
90_E	279_E	0.750	0.23
14_L	219_V	0.746	0.22
167_A	220_A	0.741	0.22
169_N	191_D	0.741	0.22
175_N	218_L	0.740	0.22
105_E	214_K	0.740	0.22
72_R	221_D	0.739	0.22
270_D	273_A	0.737	0.22
176_K	278_R	0.737	0.22
121_I	306_A	0.736	0.22
188_A	266_A	0.732	0.22
31_G	104_A	0.729	0.22
278_R	281_F	0.728	0.22
98_I	166_R	0.726	0.22
20_A	218_L	0.726	0.22
10_G	13_T	0.724	0.22
207_V	267_V	0.723	0.22
2_G	108_L	0.722	0.22
246_R	287_R	0.719	0.21
112_G	218_L	0.716	0.21
137_L	167_A	0.715	0.21
148_M	220_A	0.715	0.21
94_D	134_L	0.715	0.21
52_R	290_D	0.715	0.21
121_I	167_A	0.715	0.21
135_N	209_Y	0.713	0.21
4_R	17_T	0.713	0.21
74_I	158_H	0.711	0.21
116_E	170_R	0.710	0.21
100_A	155_A	0.708	0.21
26_Q	42_G	0.706	0.21
121_I	140_R	0.705	0.21
130_A	242_Q	0.704	0.21
140_R	143_N	0.704	0.21
156_L	240_V	0.702	0.21
90_E	286_D	0.699	0.21
70_V	193_G	0.699	0.21
264_S	273_A	0.698	0.21
94_D	290_D	0.694	0.21
36_V	93_L	0.694	0.21
284_I	317_A	0.694	0.21
78_Y	325_E	0.694	0.21
47_T	76_G	0.691	0.20
246_R	253_D	0.690	0.20
61_H	168_L	0.690	0.20
171_E	325_E	0.689	0.20
215_N	322_R	0.686	0.20
79_V	182_L	0.686	0.20
18_L	114_V	0.686	0.20
107_Q	180_L	0.684	0.20
51_A	276_A	0.683	0.20
11_P	123_I	0.682	0.20
6_V	26_Q	0.681	0.20
175_N	315_Q	0.678	0.20
181_L	198_V	0.677	0.20
97_H	165_Q	0.676	0.20
126_S	144_T	0.676	0.20
219_V	259_A	0.674	0.20
56_T	200_L	0.674	0.20
50_S	286_D	0.673	0.20
46_V	257_D	0.672	0.20
137_L	205_P	0.669	0.20
126_S	171_E	0.667	0.20
28_V	36_V	0.666	0.20
118_P	124_R	0.663	0.19
207_V	214_K	0.657	0.19
18_L	44_L	0.656	0.19
12_S	87_V	0.653	0.19
32_D	322_R	0.652	0.19
6_V	325_E	0.652	0.19
13_T	327_A	0.652	0.19
72_R	176_K	0.651	0.19
113_V	290_D	0.651	0.19
134_L	312_S	0.650	0.19
319_Y	329_N	0.648	0.19
290_D	297_E	0.647	0.19
16_M	22_W	0.646	0.19
60_I	314_Q	0.646	0.19
217_E	322_R	0.646	0.19
105_E	185_I	0.644	0.19
219_V	324_A	0.642	0.19
137_L	197_T	0.642	0.19
4_R	18_L	0.642	0.19
57_E	84_I	0.641	0.19
185_I	207_V	0.641	0.19
154_K	163_L	0.639	0.19
42_G	234_D	0.639	0.19
13_T	125_C	0.637	0.18
105_E	112_G	0.637	0.18
72_R	131_D	0.636	0.18
36_V	46_V	0.635	0.18
8_Q	25_S	0.633	0.18
254_A	284_I	0.632	0.18
145_G	220_A	0.631	0.18
232_A	294_D	0.631	0.18
17_T	202_E	0.629	0.18
46_V	253_D	0.628	0.18
172_R	180_L	0.627	0.18
34_V	104_A	0.627	0.18
309_V	316_S	0.624	0.18
128_D	194_L	0.623	0.18
138_L	200_L	0.623	0.18
305_E	309_V	0.622	0.18
96_A	286_D	0.622	0.18
5_K	152_A	0.620	0.18
133_D	176_K	0.618	0.18
54_G	87_V	0.618	0.18
157_A	277_V	0.618	0.18
212_V	261_S	0.617	0.18
153_V	249_R	0.616	0.18
119_A	251_F	0.615	0.18
122_T	199_G	0.614	0.18
14_L	23_A	0.613	0.18
10_G	148_M	0.612	0.18
74_I	328_A	0.609	0.18
197_T	220_A	0.609	0.18
59_T	322_R	0.607	0.17
126_S	223_A	0.607	0.17
23_A	144_T	0.607	0.17
154_K	158_H	0.605	0.17
6_V	148_M	0.605	0.17
39_G	128_D	0.603	0.17
89_S	219_V	0.601	0.17
262_A	320_S	0.601	0.17
235_G	302_D	0.601	0.17
126_S	226_I	0.600	0.17
54_G	317_A	0.599	0.17
290_D	294_D	0.599	0.17
216_L	295_L	0.597	0.17
67_A	301_A	0.597	0.17
54_G	276_A	0.597	0.17
55_E	87_V	0.595	0.17
148_M	312_S	0.595	0.17
148_M	174_A	0.594	0.17
9_L	266_A	0.593	0.17
102_Y	177_I	0.592	0.17
186_F	322_R	0.591	0.17
141_L	221_D	0.591	0.17
184_L	187_T	0.591	0.17
217_E	222_N	0.591	0.17
134_L	243_A	0.590	0.17
171_E	208_G	0.590	0.17
194_L	219_V	0.590	0.17
214_K	263_V	0.589	0.17
246_R	249_R	0.588	0.17
30_K	215_N	0.588	0.17
167_A	171_E	0.587	0.17
115_E	248_I	0.586	0.17
38_E	185_I	0.586	0.17
40_G	265_A	0.584	0.17
51_A	250_E	0.583	0.17
246_R	277_V	0.583	0.17
234_D	277_V	0.582	0.17
11_P	170_R	0.581	0.17
34_V	310_L	0.579	0.17
134_L	147_T	0.576	0.17
225_D	314_Q	0.575	0.16
75_V	329_N	0.575	0.16
177_I	217_E	0.574	0.16
289_A	293_A	0.573	0.16
173_Q	316_S	0.572	0.16
57_E	86_H	0.569	0.16
54_G	63_T	0.566	0.16
54_G	313_L	0.565	0.16
86_H	147_T	0.560	0.16
261_S	272_D	0.560	0.16
89_S	180_L	0.560	0.16
31_G	72_R	0.560	0.16
311_V	319_Y	0.557	0.16
89_S	93_L	0.557	0.16
191_D	197_T	0.557	0.16
79_V	187_T	0.557	0.16
296_P	304_L	0.553	0.16
109_M	127_V	0.552	0.16
5_K	22_W	0.552	0.16
109_M	328_A	0.552	0.16
127_V	131_D	0.552	0.16
28_V	165_Q	0.551	0.16
134_L	193_G	0.550	0.16
42_G	263_V	0.550	0.16
49_A	86_H	0.550	0.16
44_L	109_M	0.549	0.16
117_T	249_R	0.547	0.16
235_G	243_A	0.545	0.16
44_L	171_E	0.545	0.16
184_L	284_I	0.544	0.16
137_L	284_I	0.544	0.16
249_R	257_D	0.543	0.16
133_D	320_S	0.542	0.15
112_G	140_R	0.541	0.15
186_F	330_L	0.541	0.15
156_L	257_D	0.540	0.15
107_Q	313_L	0.540	0.15
17_T	114_V	0.538	0.15
122_T	287_R	0.538	0.15
116_E	312_S	0.537	0.15
104_A	108_L	0.536	0.15
12_S	47_T	0.532	0.15
117_T	120_R	0.532	0.15
86_H	155_A	0.530	0.15
8_Q	34_V	0.529	0.15
181_L	207_V	0.528	0.15
113_V	116_E	0.528	0.15
284_I	306_A	0.527	0.15
102_Y	173_Q	0.526	0.15
13_T	115_E	0.525	0.15
201_D	302_D	0.524	0.15
108_L	183_R	0.524	0.15
180_L	282_S	0.523	0.15
12_S	148_M	0.521	0.15
6_V	18_L	0.521	0.15
101_V	121_I	0.521	0.15
16_M	55_E	0.519	0.15
76_G	278_R	0.518	0.15
171_E	174_A	0.518	0.15
168_L	319_Y	0.518	0.15
96_A	287_R	0.516	0.15
312_S	325_E	0.516	0.15
5_K	13_T	0.512	0.15
222_N	323_N	0.512	0.15
275_V	328_A	0.509	0.15
26_Q	129_P	0.508	0.15
19_P	28_V	0.508	0.15
54_G	100_A	0.504	0.14
9_L	222_N	0.504	0.14
279_E	284_I	0.504	0.14
20_A	177_I	0.503	0.14
45_T	220_A	0.503	0.14
101_V	241_D	0.501	0.14
2_G	271_Y	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1sumB	2	0.617	99.9	0.738	Contact Map
1xwmA	2	0.5994	99.9	0.741	Contact Map
2i0mA	2	0.5848	99.9	0.743	Contact Map
1t72A	5	0.6082	99.9	0.746	Contact Map
4q25A	2	0.5965	99.9	0.754	Contact Map
2oltA	5	0.5673	99.7	0.8	Contact Map
3l39A	3	0.576	98.7	0.881	Contact Map
2mrnA	2	0.1462	98.6	0.887	Contact Map
3o27A	2	0.152	98.1	0.9	Contact Map
1mvfD	1	0.1287	98	0.902	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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