Q9HR85 - HALSA - GREMLIN Contacts

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Q9HR85 - Quinone oxidoreductase

UniProt:	Q9HR85	Sequences: MHDRAAVNTYGCLPGVPVLGARSRTPEGAAGSVTTLPLGVVDDCMRDTSREWVFAERPEGEPDMDSFELRERDVPEPRHGELLVRVRYLSVDPYMRGRMRDSDSYADPWTVGEPLSGGVVGEVVESESDAYEAGDLVSGNGTWADYSLLDAANVAPVDPSVADLPAYLGVLGMPGRTAYFGLLEVGAPKPGDTVVVSGAAGAVGSVVGQIAKHNGCRVVGFAGSEEKVDWLTEDLGFDAGINYKQVDDYSAALDDAAPDGVDVYFDNVGGPISDAVFTKLNVDARVAVCGQIAHYNNEDVPTGPRKLPQLIAPRAKVQGLLVGDFATRFGEASEQLGQWVAAGDIEHRETVVSGLENAPDAFLGLFSGDNIGKQVVGVSE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	380 (304)
Sequences:	49346 (33852)
Seq/√Len:	1941.5

ECOLI - CURA YGGP YBDR QOR1 ACUI YCJQ YPHC GATD YAHK RSPB YDJL AHR ADHP YJJN TDH YDJJ FRMA IDND
BACSU - YFMJ YHFP YOGA ADHA BDHA DHSO ADHB YYCR YJMD TDH
HALSA - Q9HR85 Q9HP38 Q9HMB6 Q9HQS8 GLCDH
SULSO - ADH Q97ZV3 Q97YT7 Q7LXK1 Q97WA1 Q97VW0 Q97VV5 Q97XR4 Q97V32 Q97YM2 GLCD2 GLCD1 Q97TZ4 GLCD3 Q97VB8 Q97UW5 Q97W06

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
87_R	164_L	3.112	1.00
357_N	360_D	3.089	1.00
82_L	154_V	2.636	1.00
193_T	217_R	2.626	1.00
212_K	238_D	2.593	1.00
163_D	166_A	2.562	1.00
353_S	364_G	2.509	1.00
136_L	157_V	2.497	1.00
55_A	70_R	2.476	1.00
135_D	156_P	2.448	1.00
132_E	135_D	2.426	1.00
252_A	255_D	2.401	1.00
74_V	146_Y	2.362	1.00
165_P	352_V	2.318	1.00
85_R	146_Y	2.313	1.00
217_R	239_A	2.236	1.00
115_L	142_T	2.205	1.00
194_V	211_A	2.197	1.00
338_Q	342_A	2.136	1.00
130_A	151_A	2.123	1.00
79_H	126_S	2.094	1.00
351_V	364_G	2.089	1.00
229_D	233_E	2.079	1.00
78_R	81_E	2.065	1.00
354_G	357_N	2.063	1.00
229_D	234_D	2.036	1.00
208_G	237_F	2.033	1.00
161_V	341_A	2.019	1.00
79_H	127_E	2.017	1.00
189_K	192_D	2.005	1.00
53_V	70_R	2.004	1.00
115_L	139_G	1.994	1.00
80_G	127_E	1.988	1.00
136_L	164_L	1.984	1.00
352_V	377_G	1.978	1.00
116_S	164_L	1.944	1.00
363_L	367_S	1.943	1.00
83_L	148_L	1.901	1.00
100_R	366_F	1.896	1.00
175_G	206_V	1.893	1.00
55_A	68_E	1.890	1.00
183_L	214_N	1.843	1.00
360_D	363_L	1.820	1.00
195_V	221_F	1.809	1.00
213_H	344_D	1.803	1.00
125_E	128_S	1.796	1.00
195_V	261_V	1.771	1.00
353_S	361_A	1.763	1.00
228_V	240_G	1.763	1.00
192_D	285_R	1.759	1.00
219_V	261_V	1.756	1.00
228_V	233_E	1.742	1.00
364_G	369_D	1.739	1.00
262_D	281_N	1.730	1.00
225_E	229_D	1.724	1.00
285_R	316_K	1.694	1.00
157_V	164_L	1.685	1.00
157_V	167_Y	1.684	1.00
222_A	228_V	1.677	1.00
360_D	364_G	1.673	1.00
247_D	252_A	1.656	1.00
225_E	242_N	1.654	1.00
197_S	276_V	1.645	1.00
239_A	256_A	1.627	1.00
230_W	234_D	1.626	1.00
280_L	286_V	1.594	1.00
280_L	315_A	1.574	1.00
77_P	148_L	1.570	1.00
217_R	238_D	1.570	1.00
285_R	318_Q	1.567	1.00
131_Y	156_P	1.554	1.00
83_L	146_Y	1.553	1.00
165_P	377_G	1.550	1.00
225_E	245_Q	1.549	1.00
81_E	150_D	1.543	1.00
143_W	362_F	1.537	1.00
186_G	263_V	1.535	1.00
248_D	251_A	1.530	1.00
223_G	243_Y	1.525	1.00
50_R	145_D	1.512	1.00
242_N	245_Q	1.502	1.00
77_P	83_L	1.501	1.00
86_V	115_L	1.495	1.00
350_T	364_G	1.492	1.00
208_G	220_G	1.488	1.00
131_Y	135_D	1.458	1.00
280_L	284_A	1.437	1.00
136_L	160_S	1.415	1.00
52_W	358_A	1.410	1.00
359_P	363_L	1.408	1.00
88_Y	165_P	1.407	1.00
81_E	148_L	1.406	1.00
80_G	150_D	1.403	1.00
264_Y	276_V	1.395	1.00
124_V	133_A	1.384	1.00
264_Y	280_L	1.382	1.00
99_M	362_F	1.345	1.00
200_A	220_G	1.321	1.00
82_L	131_Y	1.308	1.00
50_R	71_E	1.302	1.00
197_S	221_F	1.297	1.00
338_Q	341_A	1.289	1.00
193_T	219_V	1.286	1.00
213_H	339_W	1.281	1.00
251_A	255_D	1.272	1.00
207_V	265_F	1.270	1.00
228_V	242_N	1.254	1.00
52_W	69_L	1.248	1.00
188_P	216_C	1.244	1.00
74_V	83_L	1.199	1.00
131_Y	154_V	1.183	1.00
184_E	332_A	1.170	1.00
86_V	147_S	1.166	1.00
63_D	66_S	1.165	1.00
50_R	356_E	1.157	1.00
225_E	228_V	1.141	1.00
87_R	136_L	1.140	1.00
77_P	81_E	1.130	1.00
80_G	151_A	1.130	1.00
149_L	154_V	1.129	1.00
252_A	256_A	1.119	1.00
184_E	335_Q	1.112	1.00
200_A	222_A	1.108	1.00
88_Y	377_G	1.108	1.00
209_Q	346_E	1.107	1.00
193_T	262_D	1.104	1.00
220_G	237_F	1.100	1.00
91_V	361_A	1.100	1.00
223_G	244_K	1.097	1.00
51_E	72_R	1.096	1.00
224_S	242_N	1.090	1.00
335_Q	338_Q	1.088	1.00
278_T	309_Q	1.087	1.00
99_M	366_F	1.072	1.00
166_A	346_E	1.071	1.00
179_Y	183_L	1.068	1.00
230_W	371_I	1.067	1.00
192_D	262_D	1.062	1.00
339_W	344_D	1.059	1.00
248_D	252_A	1.058	1.00
178_A	210_I	1.056	1.00
186_G	287_A	1.056	1.00
358_A	376_V	1.055	1.00
52_W	355_L	1.052	1.00
76_E	121_G	1.037	1.00
180_F	332_A	1.036	1.00
354_G	377_G	1.028	1.00
69_L	356_E	1.023	1.00
185_V	316_K	1.016	1.00
245_Q	252_A	1.015	1.00
84_V	137_V	1.009	1.00
257_A	260_G	1.009	1.00
250_S	278_T	1.007	1.00
88_Y	164_L	1.007	1.00
334_E	338_Q	1.001	1.00
143_W	358_A	0.992	1.00
88_Y	375_V	0.986	1.00
87_R	116_S	0.986	1.00
162_A	167_Y	0.984	1.00
92_D	113_E	0.975	1.00
92_D	114_P	0.974	1.00
175_G	336_L	0.974	1.00
268_V	272_I	0.972	1.00
211_A	216_C	0.971	1.00
89_L	143_W	0.969	1.00
219_V	239_A	0.966	1.00
364_G	374_Q	0.960	1.00
96_R	365_L	0.950	1.00
183_L	335_Q	0.950	1.00
208_G	218_V	0.948	1.00
363_L	366_F	0.948	1.00
171_L	340_V	0.943	1.00
178_A	207_V	0.939	1.00
85_R	145_D	0.937	1.00
266_D	269_G	0.931	1.00
62_P	66_S	0.930	1.00
250_S	275_A	0.929	1.00
62_P	65_D	0.929	1.00
274_D	278_T	0.922	1.00
196_V	207_V	0.920	1.00
87_R	120_V	0.920	1.00
124_V	128_S	0.912	1.00
90_S	114_P	0.912	1.00
221_F	243_Y	0.912	1.00
179_Y	335_Q	0.910	1.00
253_L	261_V	0.909	1.00
181_G	289_C	0.907	1.00
89_L	142_T	0.907	1.00
128_S	151_A	0.900	1.00
250_S	254_D	0.896	1.00
181_G	265_F	0.892	1.00
275_A	278_T	0.892	1.00
330_G	334_E	0.887	1.00
197_S	264_Y	0.887	1.00
143_W	376_V	0.883	1.00
205_S	230_W	0.880	1.00
188_P	192_D	0.876	1.00
310_L	317_V	0.875	1.00
196_V	211_A	0.874	1.00
119_V	131_Y	0.871	1.00
223_G	228_V	0.871	1.00
53_V	72_R	0.867	1.00
192_D	263_V	0.866	1.00
195_V	279_K	0.865	1.00
227_K	371_I	0.863	1.00
83_L	121_G	0.861	1.00
76_E	83_L	0.861	1.00
210_I	336_L	0.860	1.00
83_L	120_V	0.860	1.00
220_G	231_L	0.859	1.00
219_V	241_I	0.856	1.00
222_A	240_G	0.854	1.00
234_D	346_E	0.853	1.00
80_G	125_E	0.852	1.00
132_E	156_P	0.852	1.00
283_D	314_R	0.846	1.00
183_L	210_I	0.844	1.00
176_R	332_A	0.840	1.00
335_Q	339_W	0.834	1.00
115_L	147_S	0.832	1.00
309_Q	313_P	0.832	1.00
138_S	337_G	0.831	1.00
331_E	335_Q	0.824	1.00
160_S	341_A	0.823	1.00
224_S	227_K	0.821	1.00
129_D	151_A	0.820	1.00
53_V	110_T	0.817	1.00
219_V	253_L	0.816	1.00
210_I	339_W	0.815	1.00
193_T	261_V	0.815	1.00
234_D	348_R	0.810	1.00
351_V	360_D	0.810	1.00
251_A	254_D	0.804	1.00
121_G	133_A	0.799	1.00
181_G	207_V	0.798	1.00
78_R	148_L	0.796	1.00
226_E	229_D	0.796	1.00
91_V	365_L	0.795	1.00
185_V	318_Q	0.793	1.00
353_S	357_N	0.792	1.00
250_S	279_K	0.787	1.00
193_T	259_D	0.786	1.00
219_V	256_A	0.784	1.00
120_V	146_Y	0.782	1.00
365_L	374_Q	0.781	1.00
200_A	231_L	0.779	1.00
249_Y	275_A	0.779	1.00
182_L	211_A	0.779	1.00
231_L	237_F	0.775	1.00
92_D	95_M	0.768	1.00
178_A	203_V	0.768	1.00
94_Y	113_E	0.767	1.00
69_L	355_L	0.766	1.00
85_R	120_V	0.764	1.00
211_A	218_V	0.763	1.00
91_V	143_W	0.762	1.00
267_N	289_C	0.760	1.00
162_A	340_V	0.757	1.00
339_W	342_A	0.755	1.00
306_K	309_Q	0.752	1.00
178_A	206_V	0.751	1.00
248_D	275_A	0.748	1.00
233_E	239_A	0.746	1.00
124_V	132_E	0.744	1.00
80_G	126_S	0.741	1.00
50_R	69_L	0.738	1.00
72_R	110_T	0.733	1.00
331_E	334_E	0.731	1.00
188_P	263_V	0.728	1.00
194_V	216_C	0.726	1.00
264_Y	286_V	0.725	1.00
288_V	317_V	0.723	1.00
139_G	149_L	0.722	1.00
137_V	154_V	0.721	1.00
196_V	220_G	0.717	1.00
276_V	286_V	0.717	1.00
142_T	147_S	0.715	1.00
82_L	151_A	0.715	1.00
218_V	238_D	0.714	1.00
92_D	173_M	0.714	1.00
370_N	374_Q	0.712	1.00
180_F	314_R	0.711	1.00
121_G	131_Y	0.708	1.00
364_G	367_S	0.708	1.00
138_S	157_V	0.708	1.00
339_W	343_G	0.705	1.00
214_N	335_Q	0.703	1.00
233_E	240_G	0.702	1.00
54_F	66_S	0.702	1.00
245_Q	248_D	0.701	1.00
310_L	315_A	0.697	1.00
351_V	374_Q	0.695	1.00
187_A	316_K	0.695	1.00
77_P	125_E	0.694	1.00
259_D	281_N	0.693	1.00
349_E	352_V	0.689	1.00
92_D	174_P	0.687	1.00
62_P	68_E	0.686	1.00
51_E	110_T	0.685	1.00
113_E	173_M	0.684	1.00
282_V	313_P	0.681	1.00
114_P	173_M	0.679	1.00
222_A	231_L	0.678	1.00
174_P	202_A	0.677	1.00
353_S	374_Q	0.677	1.00
187_A	318_Q	0.676	1.00
263_V	287_A	0.676	1.00
187_A	285_R	0.675	1.00
261_V	264_Y	0.674	1.00
353_S	376_V	0.674	1.00
178_A	182_L	0.671	1.00
75_P	148_L	0.671	1.00
230_W	348_R	0.670	1.00
273_S	286_V	0.668	1.00
155_A	333_S	0.665	1.00
155_A	334_E	0.664	1.00
205_S	348_R	0.663	1.00
65_D	363_L	0.660	1.00
216_C	263_V	0.657	1.00
52_W	359_P	0.657	1.00
249_Y	253_L	0.656	1.00
228_V	231_L	0.655	1.00
337_G	341_A	0.651	1.00
253_L	279_K	0.649	1.00
179_Y	339_W	0.649	1.00
239_A	252_A	0.646	1.00
93_P	97_G	0.645	1.00
179_Y	336_L	0.644	1.00
208_G	235_L	0.642	1.00
84_V	139_G	0.640	1.00
230_W	235_L	0.638	1.00
87_R	377_G	0.638	1.00
197_S	272_I	0.638	1.00
159_P	341_A	0.635	1.00
295_Y	306_K	0.633	1.00
130_A	330_G	0.632	1.00
310_L	319_G	0.632	1.00
173_M	177_T	0.631	1.00
130_A	133_A	0.630	1.00
177_T	203_V	0.630	1.00
254_D	257_A	0.629	1.00
138_S	172_G	0.629	1.00
75_P	146_Y	0.628	1.00
52_W	67_F	0.628	1.00
105_Y	109_W	0.627	1.00
212_K	218_V	0.626	1.00
136_L	161_V	0.625	1.00
186_G	285_R	0.625	1.00
222_A	243_Y	0.623	1.00
130_A	156_P	0.622	1.00
94_Y	98_R	0.621	1.00
221_F	241_I	0.621	1.00
228_V	243_Y	0.617	1.00
254_D	260_G	0.616	1.00
231_L	240_G	0.616	1.00
64_M	363_L	0.615	1.00
135_D	160_S	0.614	1.00
261_V	279_K	0.613	1.00
208_G	231_L	0.611	1.00
155_A	337_G	0.610	1.00
210_I	214_N	0.609	1.00
362_F	366_F	0.606	1.00
80_G	152_A	0.605	1.00
120_V	124_V	0.603	1.00
116_S	157_V	0.602	1.00
241_I	256_A	0.600	1.00
271_P	275_A	0.599	1.00
139_G	154_V	0.597	1.00
116_S	168_L	0.595	1.00
86_V	89_L	0.595	1.00
314_R	324_D	0.595	1.00
181_G	320_L	0.592	1.00
274_D	309_Q	0.591	1.00
97_G	102_S	0.590	1.00
266_D	286_V	0.587	1.00
179_Y	332_A	0.587	1.00
96_R	366_F	0.586	1.00
263_V	285_R	0.585	1.00
222_A	242_N	0.584	1.00
209_Q	235_L	0.582	1.00
92_D	373_K	0.581	1.00
116_S	136_L	0.581	1.00
61_E	107_D	0.581	1.00
88_Y	352_V	0.578	1.00
340_V	347_H	0.577	1.00
364_G	370_N	0.576	1.00
159_P	167_Y	0.575	1.00
287_A	320_L	0.575	1.00
207_V	289_C	0.572	1.00
272_I	276_V	0.571	1.00
194_V	263_V	0.567	1.00
84_V	154_V	0.567	1.00
93_P	201_G	0.567	1.00
271_P	274_D	0.566	1.00
190_P	214_N	0.565	1.00
88_Y	116_S	0.564	1.00
219_V	257_A	0.563	1.00
264_Y	279_K	0.563	1.00
308_P	311_I	0.562	1.00
193_T	257_A	0.562	1.00
206_V	210_I	0.561	1.00
75_P	83_L	0.561	1.00
140_N	155_A	0.559	1.00
200_A	208_G	0.556	1.00
177_T	289_C	0.555	1.00
67_F	362_F	0.555	1.00
174_P	206_V	0.552	1.00
151_A	154_V	0.550	1.00
129_D	132_E	0.548	1.00
96_R	100_R	0.547	1.00
241_I	252_A	0.546	1.00
190_P	215_G	0.545	1.00
184_E	214_N	0.545	1.00
241_I	247_D	0.545	1.00
112_G	143_W	0.543	1.00
124_V	135_D	0.538	1.00
86_V	139_G	0.538	1.00
89_L	376_V	0.538	1.00
125_E	133_A	0.537	1.00
340_V	345_I	0.537	1.00
69_L	358_A	0.537	1.00
74_V	148_L	0.533	1.00
206_V	345_I	0.532	1.00
182_L	210_I	0.532	1.00
195_V	264_Y	0.532	1.00
73_D	76_E	0.531	1.00
200_A	227_K	0.531	1.00
116_S	167_Y	0.530	1.00
222_A	227_K	0.530	1.00
259_D	262_D	0.522	1.00
163_D	352_V	0.521	1.00
266_D	290_G	0.520	1.00
206_V	209_Q	0.520	1.00
241_I	249_Y	0.520	1.00
74_V	77_P	0.517	1.00
309_Q	312_A	0.517	1.00
98_R	105_Y	0.517	1.00
77_P	127_E	0.517	1.00
131_Y	151_A	0.515	1.00
138_S	155_A	0.515	1.00
205_S	235_L	0.512	1.00
197_S	249_Y	0.512	1.00
184_E	331_E	0.509	1.00
136_L	167_Y	0.508	1.00
164_L	167_Y	0.508	1.00
157_V	160_S	0.508	1.00
309_Q	315_A	0.507	1.00
181_G	287_A	0.506	1.00
66_S	359_P	0.505	1.00
212_K	237_F	0.505	1.00
104_S	107_D	0.505	1.00
97_G	291_Q	0.503	1.00
139_G	147_S	0.503	1.00
179_Y	214_N	0.503	1.00
84_V	115_L	0.501	1.00
86_V	142_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4gi2A	2	0.9	100	0.274	Contact Map
3uogA	4	0.8184	100	0.283	Contact Map
4hfmA	2	0.85	100	0.285	Contact Map
4j6fA	2	0.8421	100	0.287	Contact Map
3ukoA	4	0.8395	100	0.29	Contact Map
4a27A	2	0.7895	100	0.291	Contact Map
4ej6A	1	0.8026	100	0.293	Contact Map
1f8fA	4	0.8211	100	0.294	Contact Map
4nh4A	2	0.8605	100	0.295	Contact Map
3qwbA	2	0.8421	100	0.298	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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