Q9HR78 - HALSA - GREMLIN Contacts

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Q9HR78 - Probable molybdenum cofactor guanylyltransferase

UniProt:	Q9HR78	Sequences: MVMGSAAGGRAGIVLAGGRSTRFGDREKALATLGGRPLLWHVVARLGTVVDSVVVNCRRDQRAAFRTAVTTTDTDVAFAVDPDPGQGPAAGLSTALNAVGEPVVAVTACDMPFIDPAFFAWLCDRRADAGCAGAVPVVDGHLQVTHSVLAAAPTRVAVDAAAAAGNRSLSGVVARLPVTQVPAAQTRHRTARHSFMDVDTPAELAAARERHRAPRAVDRAHDPGETGVSNAGD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	233 (185)
Sequences:	6165 (4935)
Seq/√Len:	362.9

ECOLI - MOBA MOCA
BACSU - MOBA PUCB
HALSA - Q9HR78
SULSO - Q7LXN3 Q97W15

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
36_R	44_A	5.228	1.00
11_A	101_E	3.015	1.00
13_I	95_A	2.890	1.00
23_F	31_A	2.883	1.00
37_P	40_W	2.821	1.00
29_A	109_C	2.815	1.00
52_S	77_A	2.543	1.00
12_G	46_L	2.463	1.00
12_G	50_V	2.371	1.00
103_V	126_R	2.347	1.00
113_F	207_A	2.326	1.00
31_A	204_L	2.312	1.00
46_L	107_T	2.191	1.00
36_R	41_H	2.064	1.00
11_A	52_S	1.980	1.00
200_T	203_E	1.980	1.00
168_S	171_G	1.978	1.00
13_I	104_V	1.947	1.00
103_V	148_V	1.850	1.00
11_A	99_V	1.831	1.00
133_G	176_L	1.823	1.00
97_N	159_D	1.822	1.00
99_V	104_V	1.755	1.00
126_R	134_A	1.736	1.00
36_R	40_W	1.699	1.00
105_A	119_F	1.690	1.00
81_D	90_A	1.676	1.00
118_F	194_S	1.664	1.00
115_D	194_S	1.641	1.00
198_V	207_A	1.635	1.00
108_A	111_M	1.575	1.00
96_L	104_V	1.525	1.00
33_L	38_L	1.497	1.00
115_D	118_F	1.495	1.00
40_W	44_A	1.485	1.00
157_A	175_R	1.463	1.00
86_Q	90_A	1.456	1.00
14_V	43_V	1.447	1.00
137_V	182_P	1.430	1.00
178_V	185_Q	1.421	1.00
26_R	201_P	1.418	1.00
92_L	106_V	1.415	1.00
126_R	150_A	1.395	1.00
114_I	146_H	1.383	1.00
26_R	31_A	1.365	1.00
54_V	79_A	1.363	1.00
196_M	206_A	1.353	1.00
132_A	150_A	1.351	1.00
204_L	208_R	1.349	1.00
56_N	95_A	1.345	1.00
49_V	120_A	1.333	1.00
107_T	114_I	1.332	1.00
103_V	150_A	1.313	1.00
105_A	148_V	1.301	1.00
157_A	176_L	1.278	1.00
48_T	116_P	1.260	1.00
137_V	180_Q	1.254	1.00
83_D	86_Q	1.254	1.00
172_V	176_L	1.220	1.00
157_A	160_A	1.220	1.00
142_L	180_Q	1.219	1.00
196_M	207_A	1.210	1.00
93_S	97_N	1.202	1.00
23_F	201_P	1.194	1.00
161_A	172_V	1.193	1.00
16_A	55_V	1.177	1.00
180_Q	185_Q	1.175	1.00
10_R	123_C	1.168	1.00
14_V	46_L	1.163	1.00
111_M	146_H	1.160	1.00
9_G	102_P	1.159	1.00
122_L	148_V	1.154	1.00
38_L	198_V	1.151	1.00
11_A	54_V	1.149	1.00
107_T	119_F	1.147	1.00
14_V	42_V	1.144	1.00
32_T	35_G	1.138	1.00
57_C	61_Q	1.121	1.00
47_G	75_D	1.119	1.00
43_V	53_V	1.117	1.00
40_W	74_T	1.116	1.00
60_D	64_A	1.113	1.00
33_L	207_A	1.110	1.00
135_V	141_H	1.109	1.00
23_F	26_R	1.106	1.00
126_R	148_V	1.097	1.00
13_I	106_V	1.084	1.00
92_L	169_L	1.078	1.00
205_A	208_R	1.076	1.00
43_V	76_V	1.076	1.00
37_P	41_H	1.066	1.00
86_Q	167_R	1.061	1.00
10_R	103_V	1.060	1.00
79_A	94_T	1.044	1.00
13_I	56_N	1.041	1.00
20_S	26_R	1.037	1.00
153_P	176_L	1.032	1.00
156_V	159_D	1.020	1.00
90_A	93_S	1.016	1.00
54_V	98_A	1.014	1.00
57_C	80_V	1.011	1.00
149_L	158_V	1.010	1.00
9_G	51_D	1.008	1.00
32_T	37_P	1.006	1.00
170_S	174_A	0.995	1.00
34_G	41_H	0.993	1.00
131_C	179_T	0.993	1.00
57_C	78_F	0.989	1.00
116_P	120_A	0.987	1.00
93_S	159_D	0.979	1.00
41_H	45_R	0.975	1.00
64_A	72_T	0.975	1.00
203_E	206_A	0.973	1.00
198_V	204_L	0.969	1.00
133_G	173_V	0.953	1.00
161_A	166_N	0.938	1.00
77_A	98_A	0.935	1.00
132_A	177_P	0.927	1.00
20_S	29_A	0.926	1.00
19_R	85_G	0.920	1.00
153_P	157_A	0.918	1.00
87_G	90_A	0.917	1.00
45_R	116_P	0.916	1.00
42_V	45_R	0.912	1.00
135_V	180_Q	0.900	1.00
14_V	39_L	0.896	1.00
58_R	84_P	0.892	1.00
54_V	99_V	0.875	1.00
159_D	163_A	0.874	1.00
125_R	179_T	0.870	1.00
125_R	128_D	0.868	1.00
123_C	148_V	0.866	1.00
55_V	76_V	0.856	1.00
171_G	174_A	0.845	1.00
104_V	154_T	0.845	1.00
38_L	42_V	0.842	1.00
81_D	94_T	0.840	1.00
160_A	164_A	0.832	1.00
156_V	160_A	0.821	1.00
27_E	30_L	0.817	1.00
47_G	53_V	0.816	1.00
58_R	61_Q	0.815	1.00
12_G	49_V	0.803	1.00
181_V	185_Q	0.802	1.00
157_A	172_V	0.800	1.00
20_S	27_E	0.799	1.00
90_A	94_T	0.796	1.00
27_E	60_D	0.795	1.00
178_V	182_P	0.794	1.00
118_F	136_P	0.794	1.00
61_Q	80_V	0.791	1.00
104_V	151_A	0.786	1.00
132_A	152_A	0.783	1.00
166_N	171_G	0.780	1.00
123_C	126_R	0.777	1.00
39_L	43_V	0.772	1.00
161_A	171_G	0.769	1.00
202_A	206_A	0.768	1.00
150_A	153_P	0.763	1.00
38_L	109_C	0.760	1.00
132_A	153_P	0.751	1.00
52_S	101_E	0.751	1.00
49_V	119_F	0.748	1.00
113_F	196_M	0.747	1.00
183_A	195_F	0.744	1.00
43_V	74_T	0.743	1.00
50_V	105_A	0.740	1.00
92_L	108_A	0.738	1.00
23_F	204_L	0.735	1.00
113_F	198_V	0.724	1.00
20_S	204_L	0.723	1.00
89_A	93_S	0.722	1.00
13_I	99_V	0.721	1.00
52_S	100_G	0.721	1.00
131_C	150_A	0.712	0.99
34_G	208_R	0.712	0.99
141_H	145_T	0.710	0.99
86_Q	165_G	0.709	0.99
40_W	73_D	0.708	0.99
132_A	179_T	0.707	0.99
201_P	205_A	0.706	0.99
206_A	209_E	0.705	0.99
11_A	100_G	0.703	0.99
106_V	149_L	0.703	0.99
108_A	149_L	0.699	0.99
138_V	143_Q	0.694	0.99
120_A	123_C	0.691	0.99
45_R	49_V	0.685	0.99
32_T	36_R	0.685	0.99
102_P	151_A	0.683	0.99
118_F	122_L	0.683	0.99
145_T	149_L	0.673	0.99
81_D	91_G	0.673	0.99
167_R	171_G	0.670	0.99
31_A	201_P	0.670	0.99
10_R	148_V	0.662	0.99
121_W	125_R	0.661	0.99
108_A	146_H	0.659	0.99
13_I	54_V	0.657	0.99
96_L	154_T	0.657	0.99
158_V	161_A	0.652	0.99
153_P	156_V	0.651	0.99
69_V	72_T	0.648	0.99
124_D	128_D	0.642	0.99
202_A	205_A	0.641	0.99
122_L	134_A	0.639	0.99
56_N	79_A	0.637	0.99
88_P	91_G	0.633	0.99
178_V	181_V	0.632	0.99
39_L	109_C	0.627	0.99
83_D	90_A	0.627	0.99
121_W	124_D	0.627	0.99
81_D	84_P	0.622	0.99
133_G	149_L	0.622	0.99
17_G	88_P	0.621	0.99
58_R	85_G	0.620	0.99
54_V	77_A	0.620	0.99
42_V	107_T	0.615	0.98
136_P	183_A	0.615	0.98
27_E	59_R	0.613	0.98
32_T	208_R	0.590	0.98
143_Q	147_S	0.589	0.98
170_S	173_V	0.589	0.98
17_G	91_G	0.588	0.98
89_A	158_V	0.588	0.98
17_G	90_A	0.587	0.98
136_P	194_S	0.585	0.98
105_A	123_C	0.582	0.98
79_A	95_A	0.581	0.98
120_A	124_D	0.576	0.98
29_A	38_L	0.576	0.98
53_V	76_V	0.574	0.98
77_A	80_V	0.574	0.98
108_A	143_Q	0.573	0.98
135_V	142_L	0.572	0.98
92_L	149_L	0.572	0.98
157_A	161_A	0.572	0.98
14_V	107_T	0.571	0.97
23_F	198_V	0.569	0.97
84_P	90_A	0.560	0.97
131_C	177_P	0.559	0.97
33_L	204_L	0.556	0.97
130_G	150_A	0.555	0.97
158_V	172_V	0.553	0.97
11_A	102_P	0.552	0.97
30_L	37_P	0.552	0.97
18_G	22_R	0.552	0.97
82_P	97_N	0.552	0.97
164_A	175_R	0.551	0.97
32_T	204_L	0.550	0.97
147_S	173_V	0.548	0.97
179_T	182_P	0.546	0.97
40_W	69_V	0.546	0.97
137_V	142_L	0.545	0.97
149_L	169_L	0.540	0.96
165_G	168_S	0.536	0.96
132_A	136_P	0.535	0.96
12_G	42_V	0.533	0.96
121_W	181_V	0.530	0.96
31_A	208_R	0.530	0.96
33_L	41_H	0.528	0.96
49_V	116_P	0.528	0.96
135_V	173_V	0.526	0.96
144_V	147_S	0.520	0.96
117_A	120_A	0.518	0.96
43_V	47_G	0.514	0.95
58_R	62_R	0.512	0.95
88_P	92_L	0.511	0.95
125_R	134_A	0.509	0.95
129_A	179_T	0.508	0.95
138_V	141_H	0.506	0.95
45_R	48_T	0.504	0.95
56_N	81_D	0.504	0.95
23_F	200_T	0.504	0.95
132_A	178_V	0.504	0.95
138_V	192_R	0.504	0.95
34_G	37_P	0.503	0.95
38_L	207_A	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1e5kA	1	0.8026	100	0.321	Contact Map
2e8bA	1	0.7854	100	0.37	Contact Map
2weeA	1	0.8069	100	0.373	Contact Map
3ngwA	2	0.8326	100	0.38	Contact Map
2wawA	1	0.824	100	0.383	Contact Map
3d5nA	2	0.7511	100	0.412	Contact Map
1i52A	2	0.824	100	0.503	Contact Map
2xmeA	3	0.794	100	0.506	Contact Map
1vpaA	2	0.824	100	0.506	Contact Map
3rsbA	1	0.7425	99.9	0.516	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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