DMSC - HALSA - GREMLIN Contacts

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DMSC - Putative dimethyl sulfoxide reductase membrane subunit C

UniProt:	Q9HR72	Sequences: MADDDTTARRPVLSSFGTLGRGWLGVLALLLVIGLGAWAYQLQHGLIETGMRNVFSWGLYIMLFVLFVGLSAGGLILSSAPKFFHSQRYEGFARLGVLVSLGCIIVAGLLILPDIGRPDRIYQFVTSPDFRSPMVWDFGIVMLYGALNVWYLWLLTRRDLAARGSRLSLWVSDSAAGRDRDRTLMFWTAVCALPAAVALHSVTGWIFATQVGRGDWFSPLVAPVFIAKALVSGLGLLLVVSILADRFTAFTADRGELTSLGKLLGIFLAFHVVYLLAAERLPHAWAHHFGFWAITSNFLIGDTVYFWLWTGLGGAVPLLLLATPSLRRRTAVIFTASVLAVFGTLFEGIRLVFTGYQRVNINAAPGIATGGEYAGLTTDAWATAGTYTPTAVEIAVTVGVISIGALIVMAGLRYLPLQRAAPDAAYATDGGDRTQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	435 (363)
Sequences:	1359 (982)
Seq/√Len:	51.5

ECOLI - HYBB
HALSA - DMSC
SULSO - Q97V35

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
37_A	395_A	5.076	1.00
28_A	32_V	4.406	1.00
239_V	334_F	3.871	1.00
261_G	333_I	3.406	1.00
63_L	345_L	3.338	1.00
31_L	403_I	3.227	1.00
387_Y	393_E	3.202	1.00
32_V	36_G	3.117	1.00
31_L	406_L	3.009	1.00
27_L	402_S	2.995	1.00
50_G	390_T	2.894	1.00
30_L	402_S	2.789	1.00
235_G	337_S	2.761	1.00
338_V	342_F	2.677	1.00
19_L	22_G	2.638	1.00
239_V	337_S	2.577	1.00
36_G	40_Y	2.564	1.00
112_L	121_I	2.563	1.00
306_F	309_W	2.540	1.00
316_V	339_L	2.539	1.00
220_L	275_L	2.432	1.00
123_Q	127_S	2.431	1.00
41_Q	60_Y	2.364	1.00
305_Y	309_W	2.338	1.00
23_W	409_M	2.264	1.00
242_I	334_F	2.209	1.00
257_L	333_I	2.173	1.00
320_L	336_A	2.163	1.00
320_L	326_L	2.159	1.00
264_L	340_A	2.105	1.00
69_G	229_A	2.097	1.00
25_G	29_L	2.088	1.00
48_E	392_V	2.080	1.00
40_Y	44_H	2.063	1.00
227_A	270_F	2.046	1.00
26_V	30_L	2.045	1.00
329_R	332_V	2.026	1.00
61_I	64_F	1.994	1.00
313_G	339_L	1.984	1.00
72_A	196_A	1.958	1.00
394_I	398_V	1.930	0.99
311_G	316_V	1.914	0.99
32_V	35_L	1.875	0.99
304_V	307_W	1.860	0.99
410_A	414_Y	1.853	0.99
33_I	395_A	1.848	0.99
120_R	123_Q	1.821	0.99
49_T	60_Y	1.805	0.99
44_H	47_I	1.804	0.99
123_Q	126_T	1.796	0.99
231_V	340_A	1.795	0.99
261_G	321_L	1.775	0.99
29_L	32_V	1.770	0.99
95_L	241_S	1.759	0.99
258_T	328_R	1.754	0.99
199_L	203_T	1.749	0.99
39_A	43_Q	1.727	0.99
267_F	270_F	1.720	0.99
218_S	354_T	1.715	0.99
24_L	406_L	1.710	0.99
326_L	332_V	1.709	0.99
325_S	328_R	1.705	0.99
64_F	137_D	1.696	0.99
258_T	262_K	1.668	0.98
22_G	26_V	1.662	0.98
259_S	262_K	1.652	0.98
243_L	247_F	1.622	0.98
272_V	314_G	1.620	0.98
64_F	202_V	1.561	0.98
21_R	25_G	1.550	0.97
312_L	315_A	1.539	0.97
107_A	151_Y	1.538	0.97
235_G	341_V	1.538	0.97
323_T	326_L	1.530	0.97
262_K	266_I	1.526	0.97
106_V	404_G	1.500	0.97
75_L	192_A	1.494	0.97
142_M	206_I	1.488	0.97
322_A	325_S	1.479	0.97
150_W	188_T	1.473	0.97
98_L	411_G	1.463	0.96
305_Y	308_L	1.450	0.96
114_D	203_T	1.438	0.96
46_L	49_T	1.434	0.96
313_G	317_P	1.432	0.96
40_Y	392_V	1.432	0.96
64_F	111_I	1.425	0.96
123_Q	128_P	1.415	0.96
331_A	335_T	1.414	0.96
96_G	144_Y	1.412	0.96
411_G	415_L	1.400	0.95
41_Q	46_L	1.391	0.95
399_G	409_M	1.391	0.95
29_L	115_I	1.371	0.95
144_Y	200_H	1.368	0.95
228_K	348_G	1.355	0.94
137_D	141_V	1.346	0.94
391_A	395_A	1.343	0.94
238_L	337_S	1.337	0.94
265_G	272_V	1.332	0.94
244_A	408_V	1.330	0.94
264_L	267_F	1.325	0.94
26_V	398_V	1.320	0.94
31_L	35_L	1.318	0.94
146_A	202_V	1.318	0.94
140_I	148_N	1.314	0.93
242_I	257_L	1.311	0.93
60_Y	64_F	1.311	0.93
75_L	100_S	1.287	0.93
95_L	408_V	1.276	0.92
317_P	343_G	1.275	0.92
208_A	221_V	1.265	0.92
102_G	408_V	1.257	0.92
205_W	222_A	1.255	0.92
265_G	322_A	1.254	0.92
58_G	352_V	1.242	0.91
234_L	263_L	1.242	0.91
239_V	341_V	1.239	0.91
42_L	45_G	1.225	0.91
238_L	333_I	1.217	0.90
312_L	339_L	1.216	0.90
63_L	397_T	1.207	0.90
333_I	405_A	1.195	0.90
390_T	393_E	1.195	0.90
122_Y	125_V	1.193	0.90
109_L	112_L	1.191	0.90
332_V	336_A	1.191	0.90
22_G	25_G	1.185	0.89
275_L	278_A	1.184	0.89
102_G	404_G	1.184	0.89
62_M	353_F	1.176	0.89
249_A	316_V	1.173	0.89
138_F	142_M	1.169	0.89
315_A	319_L	1.168	0.89
27_L	31_L	1.168	0.89
33_I	398_V	1.168	0.89
313_G	343_G	1.167	0.89
299_L	302_D	1.163	0.88
29_L	33_I	1.160	0.88
51_M	60_Y	1.159	0.88
102_G	407_I	1.150	0.88
108_G	112_L	1.147	0.88
315_A	335_T	1.141	0.87
115_I	288_H	1.139	0.87
136_W	140_I	1.139	0.87
69_G	73_G	1.132	0.87
202_V	206_I	1.119	0.86
48_E	395_A	1.117	0.86
219_P	298_F	1.109	0.86
69_G	132_S	1.107	0.86
231_V	267_F	1.107	0.86
108_G	111_I	1.104	0.86
318_L	322_A	1.098	0.85
76_I	100_S	1.091	0.85
188_T	194_P	1.091	0.85
250_F	419_R	1.087	0.85
134_M	206_I	1.087	0.85
142_M	146_A	1.085	0.85
137_D	203_T	1.085	0.85
78_S	96_G	1.079	0.84
280_R	284_A	1.077	0.84
301_G	304_V	1.076	0.84
69_G	72_A	1.073	0.84
272_V	318_L	1.072	0.84
65_V	348_G	1.065	0.83
312_L	325_S	1.063	0.83
124_F	128_P	1.060	0.83
29_L	36_G	1.054	0.83
321_L	336_A	1.054	0.83
46_L	51_M	1.053	0.83
274_Y	278_A	1.050	0.83
58_G	387_Y	1.042	0.82
106_V	110_L	1.036	0.82
114_D	144_Y	1.035	0.82
27_L	406_L	1.035	0.82
278_A	310_T	1.035	0.82
84_F	335_T	1.034	0.82
70_L	103_C	1.033	0.82
225_F	351_L	1.029	0.81
149_V	194_P	1.027	0.81
36_G	43_Q	1.026	0.81
190_V	194_P	1.025	0.81
37_A	392_V	1.023	0.81
229_A	348_G	1.013	0.80
34_G	37_A	1.003	0.80
25_G	31_L	1.000	0.79
105_I	407_I	0.994	0.79
179_D	272_V	0.993	0.79
258_T	327_R	0.989	0.79
25_G	32_V	0.988	0.79
265_G	321_L	0.988	0.79
71_S	233_G	0.983	0.78
117_R	120_R	0.979	0.78
279_E	283_H	0.978	0.78
303_T	309_W	0.974	0.78
283_H	287_H	0.968	0.77
108_G	134_M	0.965	0.77
70_L	73_G	0.965	0.77
238_L	264_L	0.963	0.77
38_W	41_Q	0.962	0.77
86_S	89_Y	0.959	0.76
68_V	107_A	0.956	0.76
22_G	29_L	0.956	0.76
190_V	381_W	0.955	0.76
106_V	403_I	0.951	0.76
410_A	413_R	0.950	0.76
227_A	275_L	0.943	0.75
144_Y	229_A	0.941	0.75
19_L	398_V	0.941	0.75
307_W	320_L	0.940	0.75
329_R	334_F	0.939	0.75
227_A	271_H	0.939	0.75
21_R	24_L	0.931	0.74
108_G	141_V	0.927	0.74
132_S	222_A	0.923	0.74
19_L	25_G	0.916	0.73
29_L	43_Q	0.912	0.73
325_S	332_V	0.911	0.73
141_V	202_V	0.905	0.72
101_L	158_R	0.905	0.72
93_A	402_S	0.905	0.72
137_D	140_I	0.900	0.72
180_R	264_L	0.895	0.71
228_K	341_V	0.892	0.71
24_L	27_L	0.892	0.71
305_Y	350_R	0.891	0.71
320_L	323_T	0.891	0.71
26_V	33_I	0.885	0.70
74_G	96_G	0.883	0.70
30_L	108_G	0.875	0.70
88_R	259_S	0.866	0.69
92_F	232_S	0.866	0.69
19_L	39_A	0.865	0.69
137_D	199_L	0.863	0.69
122_Y	126_T	0.863	0.69
28_A	35_L	0.863	0.69
46_L	60_Y	0.861	0.68
36_G	243_L	0.858	0.68
317_P	340_A	0.852	0.68
254_R	258_T	0.850	0.67
200_H	229_A	0.848	0.67
64_F	110_L	0.841	0.67
201_S	220_L	0.835	0.66
406_L	410_A	0.834	0.66
176_A	179_D	0.833	0.66
149_V	153_W	0.832	0.66
241_S	252_A	0.824	0.65
107_A	144_Y	0.824	0.65
107_A	229_A	0.823	0.65
22_G	386_T	0.820	0.65
116_G	387_Y	0.816	0.64
94_R	351_L	0.813	0.64
344_T	347_E	0.811	0.64
294_I	314_G	0.809	0.64
262_K	338_V	0.807	0.63
140_I	202_V	0.805	0.63
248_T	412_L	0.800	0.63
320_L	332_V	0.798	0.62
88_R	291_F	0.798	0.62
24_L	34_G	0.798	0.62
29_L	35_L	0.797	0.62
239_V	335_T	0.795	0.62
31_L	37_A	0.793	0.62
41_Q	392_V	0.792	0.62
325_S	329_R	0.791	0.62
121_I	127_S	0.787	0.61
78_S	151_Y	0.787	0.61
41_Q	48_E	0.786	0.61
74_G	144_Y	0.786	0.61
32_V	335_T	0.785	0.61
137_D	202_V	0.782	0.61
84_F	209_T	0.778	0.60
200_H	203_T	0.778	0.60
63_L	73_G	0.777	0.60
305_Y	346_F	0.777	0.60
353_F	356_Y	0.775	0.60
97_V	201_S	0.775	0.60
96_G	237_L	0.773	0.60
115_I	125_V	0.773	0.60
260_L	402_S	0.772	0.60
312_L	316_V	0.771	0.60
308_L	342_F	0.770	0.60
35_L	43_Q	0.766	0.59
297_N	301_G	0.766	0.59
405_A	409_M	0.764	0.59
306_F	343_G	0.762	0.59
240_V	403_I	0.761	0.59
27_L	36_G	0.760	0.59
223_P	275_L	0.758	0.58
59_L	397_T	0.757	0.58
31_L	38_W	0.755	0.58
74_G	99_V	0.754	0.58
206_I	211_V	0.753	0.58
244_A	259_S	0.753	0.58
115_I	127_S	0.753	0.58
25_G	36_G	0.751	0.58
100_S	152_L	0.750	0.58
275_L	419_R	0.749	0.58
75_L	229_A	0.749	0.58
314_G	317_P	0.748	0.57
78_S	199_L	0.746	0.57
268_L	313_G	0.745	0.57
109_L	402_S	0.744	0.57
77_L	283_H	0.743	0.57
266_I	274_Y	0.741	0.57
304_V	342_F	0.741	0.57
193_L	201_S	0.741	0.57
91_G	262_K	0.739	0.57
19_L	29_L	0.739	0.57
220_L	354_T	0.738	0.56
182_R	185_M	0.737	0.56
308_L	331_A	0.736	0.56
33_I	332_V	0.734	0.56
19_L	24_L	0.731	0.56
324_P	328_R	0.731	0.56
44_H	48_E	0.730	0.56
214_G	290_G	0.730	0.56
112_L	118_P	0.730	0.56
136_W	202_V	0.727	0.55
296_S	300_I	0.727	0.55
101_L	149_V	0.727	0.55
342_F	345_L	0.718	0.54
230_L	260_L	0.715	0.54
303_T	342_F	0.714	0.54
51_M	58_G	0.709	0.53
160_L	184_L	0.708	0.53
40_Y	43_Q	0.706	0.53
116_G	132_S	0.705	0.53
86_S	268_L	0.704	0.53
243_L	295_T	0.701	0.53
27_L	403_I	0.699	0.52
36_G	397_T	0.699	0.52
255_G	262_K	0.699	0.52
227_A	257_L	0.698	0.52
99_V	240_V	0.698	0.52
300_I	304_V	0.697	0.52
105_I	145_G	0.697	0.52
141_V	232_S	0.697	0.52
204_G	356_Y	0.696	0.52
75_L	347_E	0.696	0.52
134_M	137_D	0.694	0.52
132_S	387_Y	0.691	0.52
75_L	203_T	0.688	0.51
38_W	42_L	0.686	0.51
334_F	398_V	0.685	0.51
25_G	28_A	0.681	0.51
53_N	355_G	0.681	0.51
28_A	36_G	0.678	0.50
49_T	114_D	0.678	0.50
94_R	97_V	0.678	0.50
307_W	310_T	0.676	0.50
410_A	415_L	0.676	0.50
24_L	28_A	0.673	0.50
387_Y	390_T	0.673	0.50
101_L	399_G	0.673	0.50
81_P	89_Y	0.670	0.49
143_L	207_F	0.666	0.49
79_S	345_L	0.666	0.49
26_V	32_V	0.666	0.49
34_G	84_F	0.665	0.49
81_P	93_A	0.665	0.49
57_W	207_F	0.664	0.49
72_A	204_G	0.664	0.49
71_S	116_G	0.663	0.49
307_W	399_G	0.662	0.49
316_V	342_F	0.661	0.48
238_L	261_G	0.660	0.48
35_L	403_I	0.658	0.48
31_L	43_Q	0.658	0.48
62_M	349_I	0.657	0.48
109_L	403_I	0.655	0.48
35_L	300_I	0.654	0.48
101_L	411_G	0.653	0.48
133_P	138_F	0.652	0.48
69_G	348_G	0.651	0.47
149_V	329_R	0.649	0.47
277_A	281_L	0.644	0.47
60_Y	110_L	0.644	0.47
92_F	236_L	0.643	0.47
357_Q	393_E	0.643	0.47
231_V	242_I	0.643	0.47
115_I	197_V	0.642	0.46
220_L	227_A	0.640	0.46
77_L	237_L	0.639	0.46
69_G	196_A	0.638	0.46
238_L	260_L	0.635	0.46
201_S	274_Y	0.633	0.46
45_G	53_N	0.632	0.45
92_F	193_L	0.631	0.45
72_A	100_S	0.630	0.45
297_N	302_D	0.630	0.45
74_G	107_A	0.628	0.45
69_G	77_L	0.628	0.45
89_Y	259_S	0.626	0.45
71_S	236_L	0.625	0.45
235_G	408_V	0.624	0.45
133_P	142_M	0.624	0.45
73_G	401_I	0.623	0.45
87_Q	90_E	0.623	0.45
238_L	242_I	0.621	0.44
63_L	343_G	0.618	0.44
35_L	405_A	0.616	0.44
271_H	276_L	0.616	0.44
150_W	199_L	0.614	0.44
125_V	138_F	0.613	0.44
311_G	335_T	0.610	0.43
240_V	415_L	0.610	0.43
139_G	142_M	0.609	0.43
28_A	406_L	0.609	0.43
51_M	61_I	0.608	0.43
277_A	310_T	0.608	0.43
228_K	271_H	0.606	0.43
224_V	337_S	0.606	0.43
224_V	317_P	0.604	0.43
61_I	144_Y	0.604	0.43
213_R	355_G	0.603	0.42
278_A	314_G	0.602	0.42
255_G	398_V	0.602	0.42
79_S	193_L	0.602	0.42
208_A	282_P	0.599	0.42
152_L	182_R	0.598	0.42
78_S	144_Y	0.597	0.42
24_L	32_V	0.597	0.42
42_L	134_M	0.597	0.42
218_S	279_E	0.595	0.42
29_L	398_V	0.594	0.42
55_F	78_S	0.593	0.41
307_W	313_G	0.592	0.41
120_R	124_F	0.592	0.41
111_I	115_I	0.591	0.41
69_G	144_Y	0.590	0.41
270_F	275_L	0.589	0.41
31_L	40_Y	0.589	0.41
38_W	113_P	0.589	0.41
185_M	188_T	0.588	0.41
58_G	62_M	0.587	0.41
57_W	132_S	0.585	0.41
397_T	400_V	0.585	0.41
112_L	141_V	0.583	0.40
19_L	40_Y	0.582	0.40
196_A	200_H	0.582	0.40
190_V	193_L	0.581	0.40
69_G	200_H	0.580	0.40
148_N	151_Y	0.578	0.40
134_M	250_F	0.578	0.40
65_V	203_T	0.577	0.40
285_W	291_F	0.576	0.40
301_G	307_W	0.576	0.40
33_I	36_G	0.574	0.40
183_T	186_F	0.574	0.40
106_V	153_W	0.570	0.39
23_W	316_V	0.569	0.39
397_T	405_A	0.569	0.39
55_F	353_F	0.569	0.39
73_G	357_Q	0.567	0.39
116_G	393_E	0.565	0.39
268_L	311_G	0.565	0.39
75_L	344_T	0.565	0.39
255_G	267_F	0.563	0.38
62_M	352_V	0.562	0.38
58_G	211_V	0.562	0.38
65_V	77_L	0.561	0.38
60_Y	205_W	0.561	0.38
24_L	39_A	0.559	0.38
58_G	393_E	0.559	0.38
193_L	226_I	0.558	0.38
58_G	233_G	0.556	0.38
34_G	53_N	0.556	0.38
396_V	403_I	0.555	0.38
408_V	418_Q	0.553	0.37
55_F	121_I	0.552	0.37
75_L	148_N	0.550	0.37
177_G	181_D	0.548	0.37
20_G	23_W	0.547	0.37
135_V	211_V	0.546	0.37
141_V	145_G	0.546	0.37
24_L	31_L	0.545	0.37
262_K	288_H	0.544	0.37
94_R	416_P	0.544	0.37
74_G	233_G	0.542	0.36
20_G	24_L	0.540	0.36
218_S	282_P	0.539	0.36
215_D	223_P	0.538	0.36
281_L	295_T	0.538	0.36
77_L	188_T	0.538	0.36
389_P	393_E	0.538	0.36
386_T	394_I	0.536	0.36
136_W	148_N	0.535	0.36
187_W	191_C	0.534	0.36
82_K	93_A	0.534	0.36
184_L	189_A	0.532	0.35
392_V	395_A	0.532	0.35
276_L	313_G	0.530	0.35
254_R	260_L	0.530	0.35
144_Y	348_G	0.529	0.35
315_A	414_Y	0.529	0.35
82_K	222_A	0.529	0.35
80_A	230_L	0.529	0.35
151_Y	203_T	0.528	0.35
221_V	351_L	0.527	0.35
100_S	233_G	0.526	0.35
197_V	295_T	0.526	0.35
25_G	342_F	0.525	0.35
26_V	293_A	0.523	0.35
284_A	340_A	0.523	0.35
32_V	329_R	0.522	0.35
118_P	132_S	0.521	0.34
116_G	396_V	0.520	0.34
80_A	214_G	0.518	0.34
25_G	39_A	0.518	0.34
265_G	286_A	0.517	0.34
394_I	397_T	0.517	0.34
152_L	411_G	0.516	0.34
228_K	347_E	0.516	0.34
58_G	343_G	0.516	0.34
58_G	132_S	0.516	0.34
312_L	335_T	0.515	0.34
78_S	100_S	0.515	0.34
66_L	345_L	0.514	0.34
293_A	297_N	0.514	0.34
102_G	199_L	0.513	0.34
217_F	230_L	0.513	0.34
36_G	235_G	0.512	0.34
25_G	315_A	0.511	0.33
101_L	204_G	0.511	0.33
191_C	198_A	0.511	0.33
65_V	111_I	0.511	0.33
71_S	199_L	0.510	0.33
287_H	292_W	0.509	0.33
275_L	282_P	0.507	0.33
147_L	195_A	0.507	0.33
45_G	116_G	0.507	0.33
137_D	151_Y	0.506	0.33
110_L	403_I	0.505	0.33
156_T	159_D	0.505	0.33
121_I	197_V	0.504	0.33
26_V	39_A	0.504	0.33
118_P	121_I	0.504	0.33
48_E	391_A	0.503	0.33
122_Y	127_S	0.503	0.33
262_K	278_A	0.502	0.33
239_V	264_L	0.502	0.33
97_V	161_A	0.501	0.33
187_W	342_F	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2vpzC	2	0.5678	100	0.668	Contact Map
4o6yA	2	0.469	81.8	0.953	Contact Map
4ev6A	3	0.1816	40.3	0.964	Contact Map
4i0uA	4	0.1793	32.1	0.966	Contact Map
4humA	1	0.8437	30.3	0.967	Contact Map
3l1lA	2	0.7793	27.9	0.967	Contact Map
2wswA	3	0.954	23.4	0.969	Contact Map
4c7rA	3	0.9149	23.3	0.969	Contact Map
2l8sA	1	0.1057	20.3	0.969	Contact Map
4fc4A	3	0.5264	17.4	0.97	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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