Q9HR39 - HALSA - GREMLIN Contacts

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Q9HR39 - Phosphoribosylformylglycinamidine cyclo-ligase

UniProt:	Q9HR39	Sequences: MTAGENADGDPDGLTYADAGVDIADSEAATAALVDAASTGTDDTAYAGLVDLGDQYLALATDGVGTKLLVAEAVGDYSTVGIDCIAMNVNDLLAAGVEPAAFVDYLAVDEPNERRAAELGDGLAAGADAAGVALVGGETAVMPDVVRGFDIAGTAAGVATDAELFPGRAEAGDALVGFPSAGIHSNGLTLAREAATRDGGYDEPYPYEGYETVGDALLEPTRIYTHLLDAFREHGVHAAAHITGGGWTNLDRMGGFRYEVSDPLPAQPVFDYVQDAGGVSDAEMHRTFNMGTGFVVALPEDAAAALASQTDGEVVGRVADGDGVSIRGLSL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	331 (310)
Sequences:	3412 (1798)
Seq/√Len:	102.1

ECOLI - PUR5
BACSU - PUR5
HALSA - Q9HR39
SULSO - PUR5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
77_Y	149_F	3.648	1.00
39_T	128_D	3.551	1.00
183_I	191_A	3.425	1.00
169_A	238_A	3.005	1.00
211_E	219_E	2.806	1.00
125_A	129_A	2.669	1.00
171_A	320_D	2.611	1.00
74_V	214_G	2.584	1.00
176_V	312_G	2.584	1.00
130_A	223_I	2.546	1.00
175_L	295_V	2.523	1.00
42_D	98_E	2.503	1.00
125_A	128_D	2.476	1.00
51_D	161_D	2.470	1.00
259_E	317_R	2.458	1.00
54_D	162_A	2.449	1.00
292_T	315_V	2.413	1.00
239_A	294_F	2.379	1.00
175_L	297_A	2.350	1.00
194_A	279_V	2.293	1.00
307_A	312_G	2.256	1.00
17_A	22_D	2.239	1.00
54_D	161_D	2.186	1.00
259_E	319_A	2.144	1.00
176_V	307_A	2.072	1.00
32_A	117_A	2.055	1.00
76_D	215_D	2.040	1.00
72_E	148_G	2.040	1.00
177_G	292_T	2.037	1.00
253_M	297_A	2.006	1.00
257_R	319_A	2.005	1.00
298_L	306_L	2.003	1.00
28_A	32_A	1.992	1.00
258_Y	318_V	1.966	1.00
175_L	258_Y	1.955	1.00
237_H	299_P	1.928	1.00
171_A	256_F	1.913	1.00
92_L	155_A	1.882	1.00
48_G	135_V	1.871	1.00
211_E	216_A	1.846	1.00
255_G	321_G	1.843	1.00
142_M	146_V	1.829	1.00
173_D	237_H	1.812	1.00
168_R	237_H	1.811	1.00
222_R	310_T	1.739	1.00
247_W	250_L	1.727	1.00
238_A	253_M	1.686	1.00
27_E	248_T	1.677	1.00
183_I	188_L	1.671	1.00
257_R	324_V	1.657	1.00
159_A	164_L	1.647	1.00
194_A	273_V	1.641	1.00
78_S	121_D	1.632	1.00
56_Y	164_L	1.623	1.00
285_H	290_M	1.620	1.00
200_G	203_E	1.612	1.00
303_A	314_V	1.612	1.00
126_G	223_I	1.611	1.00
274_Q	281_D	1.585	1.00
108_V	116_A	1.585	1.00
299_P	302_A	1.581	1.00
24_A	286_R	1.575	1.00
234_H	306_L	1.551	1.00
239_A	296_V	1.549	1.00
216_A	219_E	1.535	1.00
94_A	239_A	1.524	1.00
29_A	33_L	1.523	1.00
82_I	126_G	1.510	1.00
304_A	308_S	1.502	1.00
36_A	121_D	1.500	1.00
68_L	145_V	1.495	1.00
60_A	92_L	1.491	1.00
121_D	125_A	1.489	1.00
15_T	18_D	1.482	1.00
247_W	295_V	1.474	1.00
31_A	34_V	1.472	1.00
257_R	321_G	1.466	1.00
307_A	314_V	1.458	1.00
106_L	116_A	1.457	1.00
25_D	113_E	1.454	1.00
44_T	50_V	1.448	1.00
69_L	148_G	1.441	1.00
29_A	116_A	1.431	1.00
265_P	313_E	1.422	1.00
256_F	318_V	1.408	1.00
235_G	302_A	1.400	1.00
179_P	313_E	1.392	1.00
176_V	314_V	1.390	1.00
82_I	129_A	1.388	1.00
32_A	114_R	1.384	1.00
169_A	253_M	1.375	1.00
274_Q	284_M	1.364	0.99
227_L	296_V	1.364	0.99
302_A	305_A	1.360	0.99
305_A	308_S	1.351	0.99
129_A	223_I	1.346	0.99
175_L	260_V	1.343	0.99
70_V	74_V	1.342	0.99
250_L	260_V	1.336	0.99
36_A	117_A	1.331	0.99
265_P	271_D	1.319	0.99
80_V	151_I	1.313	0.99
49_L	58_A	1.307	0.99
303_A	307_A	1.303	0.99
75_G	115_R	1.301	0.99
70_V	201_Y	1.298	0.99
300_E	317_R	1.275	0.99
207_Y	210_Y	1.272	0.99
59_L	101_A	1.270	0.99
51_D	54_D	1.252	0.99
73_A	196_T	1.251	0.99
266_A	271_D	1.247	0.99
211_E	215_D	1.244	0.99
321_G	324_V	1.228	0.99
26_S	30_T	1.224	0.99
169_A	318_V	1.219	0.99
230_A	306_L	1.214	0.99
55_Q	160_T	1.194	0.99
181_A	219_E	1.187	0.99
183_I	269_V	1.184	0.98
87_M	185_S	1.176	0.98
42_D	50_V	1.175	0.98
160_T	163_E	1.166	0.98
174_A	303_A	1.165	0.98
229_D	232_R	1.156	0.98
178_F	294_F	1.152	0.98
87_M	221_T	1.149	0.98
227_L	294_F	1.145	0.98
179_P	311_D	1.137	0.98
284_M	288_F	1.130	0.98
118_E	121_D	1.122	0.98
126_G	130_A	1.118	0.98
170_E	299_P	1.117	0.98
69_L	73_A	1.117	0.98
174_A	314_V	1.115	0.98
296_V	306_L	1.104	0.98
280_S	283_E	1.102	0.98
102_F	153_G	1.100	0.98
116_A	119_L	1.092	0.97
36_A	124_A	1.083	0.97
111_P	116_A	1.077	0.97
177_G	265_P	1.076	0.97
131_G	226_H	1.075	0.97
56_Y	159_A	1.072	0.97
196_T	199_G	1.069	0.97
28_A	31_A	1.068	0.97
185_S	221_T	1.049	0.97
279_V	284_M	1.047	0.97
88_N	155_A	1.044	0.97
212_T	215_D	1.034	0.96
179_P	312_G	1.033	0.96
15_T	283_E	1.030	0.96
209_G	216_A	1.028	0.96
174_A	300_E	1.024	0.96
49_L	164_L	1.024	0.96
271_D	275_D	1.022	0.96
89_V	155_A	1.020	0.96
93_L	294_F	1.014	0.96
98_E	131_G	1.014	0.96
131_G	228_L	1.011	0.96
106_L	119_L	1.011	0.96
14_L	18_D	1.005	0.96
72_E	145_V	1.005	0.96
24_A	27_E	0.993	0.96
101_A	156_A	0.990	0.95
47_A	58_A	0.989	0.95
56_Y	161_D	0.989	0.95
204_P	210_Y	0.985	0.95
266_A	290_M	0.984	0.95
59_L	156_A	0.980	0.95
175_L	318_V	0.973	0.95
168_R	235_G	0.970	0.95
129_A	226_H	0.967	0.95
101_A	135_V	0.964	0.95
126_G	129_A	0.958	0.95
196_T	201_Y	0.953	0.94
225_T	228_L	0.949	0.94
58_A	97_V	0.947	0.94
257_R	322_D	0.945	0.94
195_A	272_Y	0.943	0.94
283_E	287_T	0.937	0.94
82_I	125_A	0.934	0.94
227_L	239_A	0.934	0.94
93_L	227_L	0.931	0.94
27_E	286_R	0.931	0.94
270_F	284_M	0.927	0.94
38_S	41_T	0.925	0.93
257_R	323_G	0.920	0.93
93_L	229_D	0.917	0.93
271_D	274_Q	0.917	0.93
29_A	113_E	0.915	0.93
98_E	228_L	0.914	0.93
248_T	251_D	0.913	0.93
86_A	223_I	0.913	0.93
98_E	232_R	0.904	0.93
292_T	313_E	0.903	0.93
233_E	305_A	0.903	0.93
265_P	311_D	0.902	0.93
119_L	151_I	0.902	0.93
265_P	268_P	0.901	0.93
250_L	258_Y	0.899	0.93
227_L	231_F	0.889	0.92
87_M	223_I	0.889	0.92
195_A	198_D	0.887	0.92
277_G	284_M	0.880	0.92
229_D	233_E	0.880	0.92
69_L	72_E	0.876	0.92
204_P	212_T	0.873	0.91
173_D	299_P	0.869	0.91
290_M	321_G	0.865	0.91
29_A	120_G	0.861	0.91
169_A	237_H	0.856	0.91
179_P	309_Q	0.841	0.90
23_I	286_R	0.838	0.90
178_F	310_T	0.837	0.90
250_L	295_V	0.831	0.89
264_L	292_T	0.829	0.89
195_A	201_Y	0.828	0.89
176_V	298_L	0.827	0.89
204_P	209_G	0.826	0.89
44_T	98_E	0.817	0.88
69_L	145_V	0.816	0.88
246_G	249_N	0.816	0.88
231_F	239_A	0.812	0.88
47_A	95_A	0.812	0.88
22_D	25_D	0.812	0.88
33_L	37_A	0.811	0.88
228_L	232_R	0.809	0.88
261_S	317_R	0.809	0.88
304_A	314_V	0.809	0.88
61_T	154_T	0.808	0.88
230_A	234_H	0.804	0.88
234_H	305_A	0.802	0.87
86_A	221_T	0.801	0.87
170_E	237_H	0.801	0.87
84_C	151_I	0.799	0.87
272_Y	276_A	0.794	0.87
201_Y	213_V	0.788	0.87
53_G	161_D	0.788	0.87
52_L	158_V	0.786	0.86
86_A	185_S	0.785	0.86
113_E	117_A	0.784	0.86
240_A	247_W	0.784	0.86
106_L	151_I	0.782	0.86
145_V	148_G	0.780	0.86
165_F	239_A	0.777	0.86
53_G	160_T	0.777	0.86
298_L	303_A	0.777	0.86
114_R	118_E	0.776	0.86
88_N	102_F	0.776	0.86
229_D	235_G	0.776	0.86
177_G	313_E	0.774	0.86
207_Y	275_D	0.772	0.85
23_I	26_S	0.771	0.85
314_V	317_R	0.770	0.85
227_L	230_A	0.765	0.85
185_S	223_I	0.764	0.85
50_V	158_V	0.763	0.85
240_A	295_V	0.759	0.84
124_A	128_D	0.759	0.84
78_S	118_E	0.752	0.84
29_A	37_A	0.750	0.84
59_L	135_V	0.744	0.83
23_I	27_E	0.743	0.83
201_Y	214_G	0.742	0.83
174_A	317_R	0.736	0.83
14_L	194_A	0.735	0.83
142_M	145_V	0.732	0.82
205_Y	216_A	0.732	0.82
50_V	101_A	0.732	0.82
58_A	159_A	0.728	0.82
60_A	93_L	0.728	0.82
80_V	119_L	0.724	0.82
169_A	256_F	0.724	0.82
204_P	207_Y	0.722	0.81
230_A	296_V	0.721	0.81
195_A	273_V	0.720	0.81
213_V	217_L	0.719	0.81
25_D	28_A	0.717	0.81
25_D	110_E	0.715	0.81
51_D	158_V	0.715	0.81
274_Q	279_V	0.713	0.81
236_V	306_L	0.713	0.81
36_A	39_T	0.710	0.80
247_W	285_H	0.709	0.80
28_A	114_R	0.709	0.80
283_E	286_R	0.704	0.80
14_L	279_V	0.703	0.80
266_A	274_Q	0.702	0.80
109_D	147_R	0.702	0.80
39_T	125_A	0.695	0.79
209_G	212_T	0.694	0.79
176_V	306_L	0.693	0.79
14_L	287_T	0.687	0.78
23_I	287_T	0.686	0.78
126_G	225_T	0.686	0.78
163_E	235_G	0.684	0.78
303_A	312_G	0.683	0.78
198_D	276_A	0.682	0.78
295_V	315_V	0.682	0.78
112_N	115_R	0.682	0.78
127_A	134_L	0.681	0.77
29_A	119_L	0.680	0.77
86_A	126_G	0.678	0.77
144_D	189_T	0.676	0.77
193_E	197_R	0.676	0.77
201_Y	217_L	0.676	0.77
26_S	141_V	0.675	0.77
44_T	51_D	0.674	0.77
231_F	236_V	0.674	0.77
165_F	238_A	0.669	0.76
29_A	84_C	0.666	0.76
175_L	296_V	0.666	0.76
165_F	294_F	0.665	0.76
30_T	141_V	0.662	0.75
177_G	315_V	0.661	0.75
273_V	279_V	0.659	0.75
216_A	269_V	0.658	0.75
123_L	155_A	0.657	0.75
29_A	106_L	0.656	0.75
74_V	218_L	0.656	0.75
266_A	285_H	0.655	0.75
32_A	113_E	0.654	0.75
300_E	303_A	0.653	0.74
28_A	113_E	0.652	0.74
261_S	314_V	0.651	0.74
119_L	123_L	0.651	0.74
266_A	281_D	0.649	0.74
75_G	118_E	0.648	0.74
171_A	317_R	0.647	0.74
209_G	269_V	0.647	0.74
23_I	283_E	0.645	0.74
209_G	272_Y	0.645	0.74
92_L	157_G	0.644	0.73
37_A	48_G	0.634	0.72
284_M	290_M	0.630	0.72
270_F	277_G	0.629	0.72
71_A	80_V	0.628	0.72
258_Y	297_A	0.626	0.71
196_T	272_Y	0.624	0.71
230_A	236_V	0.624	0.71
49_L	56_Y	0.623	0.71
179_P	310_T	0.622	0.71
300_E	314_V	0.621	0.71
103_V	154_T	0.620	0.71
51_D	56_Y	0.620	0.71
15_T	286_R	0.617	0.70
45_A	95_A	0.614	0.70
84_C	247_W	0.613	0.70
195_A	199_G	0.610	0.69
37_A	41_T	0.607	0.69
16_Y	20_G	0.607	0.69
163_E	232_R	0.605	0.69
105_Y	150_D	0.604	0.69
174_A	177_G	0.603	0.69
40_G	124_A	0.602	0.68
37_A	124_A	0.601	0.68
76_D	214_G	0.600	0.68
256_F	259_E	0.599	0.68
80_V	145_V	0.598	0.68
115_R	118_E	0.598	0.68
93_L	228_L	0.597	0.68
88_N	248_T	0.596	0.68
181_A	216_A	0.595	0.68
234_H	302_A	0.594	0.67
106_L	148_G	0.592	0.67
79_T	122_G	0.588	0.67
87_M	155_A	0.588	0.67
102_F	154_T	0.582	0.66
115_R	119_L	0.579	0.65
84_C	111_P	0.579	0.65
191_A	273_V	0.579	0.65
115_R	149_F	0.577	0.65
155_A	221_T	0.575	0.65
70_V	191_A	0.575	0.65
273_V	284_M	0.574	0.65
231_F	306_L	0.574	0.65
53_G	158_V	0.574	0.65
14_L	283_E	0.574	0.65
195_A	217_L	0.573	0.65
60_A	88_N	0.571	0.64
66_T	142_M	0.571	0.64
231_F	235_G	0.571	0.64
15_T	287_T	0.570	0.64
139_T	142_M	0.569	0.64
177_G	295_V	0.568	0.64
86_A	220_P	0.568	0.64
247_W	260_V	0.568	0.64
199_G	276_A	0.568	0.64
15_T	279_V	0.566	0.64
41_T	44_T	0.565	0.64
33_L	120_G	0.565	0.64
33_L	36_A	0.564	0.63
257_R	318_V	0.563	0.63
111_P	151_I	0.563	0.63
80_V	126_G	0.562	0.63
195_A	276_A	0.562	0.63
68_L	146_V	0.562	0.63
186_N	244_G	0.561	0.63
73_A	201_Y	0.560	0.63
212_T	216_A	0.560	0.63
178_F	222_R	0.559	0.63
311_D	314_V	0.559	0.63
52_L	160_T	0.558	0.63
70_V	183_I	0.558	0.63
183_I	217_L	0.555	0.62
268_P	271_D	0.554	0.62
177_G	264_L	0.554	0.62
262_D	265_P	0.553	0.62
191_A	196_T	0.552	0.62
117_A	121_D	0.552	0.62
235_G	299_P	0.550	0.61
191_A	194_A	0.549	0.61
228_L	231_F	0.547	0.61
51_D	160_T	0.545	0.61
183_I	270_F	0.545	0.61
250_L	285_H	0.545	0.61
108_V	115_R	0.544	0.61
76_D	79_T	0.543	0.60
205_Y	272_Y	0.542	0.60
35_D	38_S	0.542	0.60
175_L	253_M	0.541	0.60
29_A	290_M	0.540	0.60
87_M	220_P	0.538	0.60
48_G	59_L	0.537	0.60
209_G	215_D	0.535	0.59
42_D	133_A	0.535	0.59
35_D	117_A	0.534	0.59
33_L	111_P	0.532	0.59
72_E	149_F	0.529	0.59
111_P	141_V	0.528	0.58
86_A	130_A	0.527	0.58
77_Y	115_R	0.525	0.58
193_E	196_T	0.525	0.58
15_T	280_S	0.524	0.58
173_D	300_E	0.523	0.58
194_A	276_A	0.523	0.58
266_A	284_M	0.522	0.58
195_A	213_V	0.522	0.58
70_V	214_G	0.521	0.57
59_L	154_T	0.520	0.57
262_D	266_A	0.520	0.57
62_D	186_N	0.519	0.57
86_A	225_T	0.516	0.57
14_L	197_R	0.512	0.56
213_V	269_V	0.512	0.56
253_M	295_V	0.511	0.56
308_S	320_D	0.510	0.56
82_I	86_A	0.510	0.56
120_G	123_L	0.510	0.56
170_E	233_E	0.510	0.56
31_A	35_D	0.509	0.56
42_D	132_V	0.509	0.56
69_L	147_R	0.508	0.56
155_A	185_S	0.506	0.55
256_F	321_G	0.505	0.55
174_A	179_P	0.505	0.55
203_E	213_V	0.505	0.55
55_Q	59_L	0.504	0.55
167_G	238_A	0.504	0.55
45_A	49_L	0.502	0.55
163_E	231_F	0.501	0.54
89_V	130_A	0.501	0.54
82_I	223_I	0.500	0.54
178_F	296_V	0.500	0.54

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3kizA	2	0.8852	100	0.447	Contact Map
3mdoA	2	0.8761	100	0.457	Contact Map
2btuA	2	0.9063	100	0.488	Contact Map
2z01A	2	0.864	100	0.5	Contact Map
3m84A	2	0.9668	100	0.517	Contact Map
3p4eA	2	0.9033	100	0.519	Contact Map
2v9yA	2	0.8429	100	0.573	Contact Map
3wjpA	2	0.8761	100	0.684	Contact Map
4lgyA	1	0.9033	100	0.691	Contact Map
3u0oA	2	0.8792	100	0.696	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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