Q9HQY2 - HALSA - GREMLIN Contacts

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Q9HQY2 - Flagella-related protein H

UniProt:	Q9HQY2	Sequences: MSQRFSYGLCEEENAVTLVSTELTVRGFIDQMHSLSYDVEEHLLNENLLFLEADVDTGKSALRGGASSNDDDGSRRQLLKRLMEADRMWDADVVVVDTFDAILRNDPNFEALVRENEERQAALEIISFFRDLVSQGKVIVLTVDPSTVDEEAIGPFRSIADVYLELEMVEVGNDVRRSIAVRRFAGMGEQVGDSIGYSVRSGTGIVIESRSVA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	213 (181)
Sequences:	1831 (1309)
Seq/√Len:	97.3

HALSA - Q9HQY2 Q9HNX8 Q9HP98 GVPD2
SULSO - Q97WB6 Y1861 Q97VZ8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
8_G	11_E	4.286	1.00
9_L	93_V	3.861	1.00
6_S	16_V	3.672	1.00
8_G	12_E	3.269	1.00
25_V	29_I	3.157	1.00
14_N	93_V	3.088	1.00
9_L	14_N	3.073	1.00
40_E	44_L	3.032	1.00
3_Q	32_M	3.009	1.00
87_R	135_Q	2.802	1.00
33_H	40_E	2.771	1.00
6_S	95_V	2.711	1.00
10_C	48_L	2.708	1.00
29_I	43_L	2.695	1.00
200_R	206_V	2.462	1.00
14_N	92_D	2.427	1.00
10_C	42_H	2.393	1.00
85_A	88_M	2.393	1.00
41_E	45_N	2.374	1.00
17_T	91_A	2.262	1.00
31_Q	186_G	2.255	1.00
5_F	9_L	2.243	1.00
15_A	92_D	2.210	1.00
177_R	192_G	2.191	1.00
5_F	93_V	2.174	1.00
176_R	196_G	2.070	1.00
162_V	184_F	2.024	1.00
38_D	41_E	2.002	1.00
2_S	95_V	1.956	1.00
179_I	207_I	1.942	1.00
132_L	139_I	1.889	1.00
175_V	180_A	1.863	1.00
155_P	158_S	1.805	1.00
94_V	137_K	1.746	1.00
6_S	93_V	1.745	1.00
3_Q	28_F	1.685	1.00
84_E	88_M	1.625	1.00
190_Q	193_D	1.588	1.00
190_Q	195_I	1.582	1.00
15_A	89_W	1.560	1.00
4_R	8_G	1.521	1.00
51_L	81_R	1.515	1.00
6_S	18_L	1.510	1.00
15_A	90_D	1.488	1.00
184_F	187_M	1.438	1.00
18_L	95_V	1.428	1.00
39_V	48_L	1.404	0.99
33_H	38_D	1.357	0.99
178_S	194_S	1.338	0.99
23_L	185_A	1.282	0.99
169_V	178_S	1.277	0.99
7_Y	37_Y	1.269	0.99
10_C	16_V	1.262	0.99
49_L	89_W	1.252	0.99
96_V	145_P	1.180	0.98
53_A	58_G	1.171	0.98
7_Y	38_D	1.155	0.98
28_F	50_F	1.149	0.98
98_T	142_T	1.145	0.98
81_R	85_A	1.143	0.98
9_L	12_E	1.134	0.98
16_V	95_V	1.106	0.97
29_I	40_E	1.104	0.97
153_I	158_S	1.099	0.97
82_L	86_D	1.091	0.97
98_T	159_I	1.080	0.97
174_D	192_G	1.080	0.97
47_N	50_F	1.069	0.97
19_V	82_L	1.060	0.96
197_Y	205_I	1.059	0.96
20_S	28_F	1.056	0.96
167_E	194_S	1.049	0.96
124_E	128_F	1.046	0.96
170_E	173_N	1.039	0.96
94_V	139_I	1.024	0.96
15_A	47_N	1.008	0.95
198_S	206_V	1.003	0.95
4_R	37_Y	1.001	0.95
27_G	186_G	0.998	0.95
160_A	163_Y	0.992	0.95
167_E	180_A	0.980	0.95
18_L	142_T	0.979	0.94
188_G	192_G	0.975	0.94
15_A	88_M	0.973	0.94
7_Y	11_E	0.968	0.94
24_T	27_G	0.965	0.94
42_H	47_N	0.956	0.94
94_V	132_L	0.953	0.94
188_G	201_S	0.950	0.94
90_D	135_Q	0.945	0.93
100_D	174_D	0.927	0.93
16_V	48_L	0.915	0.92
20_S	58_G	0.914	0.92
96_V	136_G	0.910	0.92
107_P	121_A	0.899	0.92
198_S	208_E	0.885	0.91
144_D	158_S	0.881	0.91
84_E	188_G	0.875	0.90
95_V	142_T	0.873	0.90
3_Q	18_L	0.867	0.90
18_L	50_F	0.860	0.90
150_E	155_P	0.851	0.89
27_G	82_L	0.849	0.89
16_V	92_D	0.845	0.89
43_L	47_N	0.834	0.88
22_E	127_S	0.832	0.88
198_S	201_S	0.830	0.88
31_Q	161_D	0.829	0.88
165_E	182_R	0.829	0.88
3_Q	20_S	0.825	0.88
30_D	33_H	0.811	0.87
167_E	178_S	0.808	0.87
166_L	197_Y	0.807	0.86
80_K	84_E	0.803	0.86
198_S	207_I	0.800	0.86
167_E	170_E	0.795	0.86
52_E	56_D	0.794	0.86
42_H	45_N	0.788	0.85
199_V	207_I	0.786	0.85
125_I	129_F	0.782	0.85
48_L	99_F	0.781	0.85
170_E	194_S	0.779	0.85
18_L	101_A	0.776	0.84
101_A	184_F	0.771	0.84
153_I	156_F	0.762	0.83
182_R	189_E	0.758	0.83
169_V	194_S	0.758	0.83
122_A	125_I	0.750	0.82
24_T	143_V	0.749	0.82
11_E	42_H	0.745	0.82
140_V	160_A	0.744	0.82
5_F	14_N	0.741	0.81
3_Q	133_V	0.741	0.81
202_G	206_V	0.738	0.81
22_E	133_V	0.737	0.81
177_R	197_Y	0.732	0.81
170_E	175_V	0.730	0.80
107_P	120_Q	0.726	0.80
6_S	9_L	0.725	0.80
98_T	161_D	0.724	0.80
180_A	194_S	0.720	0.80
2_S	142_T	0.718	0.79
75_R	106_D	0.717	0.79
124_E	129_F	0.714	0.79
121_A	127_S	0.713	0.79
18_L	143_V	0.708	0.78
43_L	48_L	0.707	0.78
126_I	158_S	0.707	0.78
154_G	158_S	0.707	0.78
2_S	6_S	0.705	0.78
177_R	199_V	0.701	0.78
22_E	122_A	0.689	0.77
75_R	99_F	0.681	0.76
121_A	128_F	0.681	0.76
86_D	137_K	0.680	0.76
54_D	57_T	0.676	0.75
27_G	133_V	0.674	0.75
93_V	138_V	0.674	0.75
165_E	180_A	0.672	0.75
120_Q	205_I	0.669	0.74
138_V	185_A	0.669	0.74
131_D	134_S	0.666	0.74
23_L	28_F	0.665	0.74
26_R	136_G	0.664	0.74
87_R	136_G	0.663	0.74
120_Q	181_V	0.658	0.73
13_E	47_N	0.658	0.73
168_M	175_V	0.656	0.73
170_E	180_A	0.653	0.73
138_V	205_I	0.650	0.72
28_F	159_I	0.650	0.72
96_V	182_R	0.648	0.72
163_Y	180_A	0.641	0.71
36_S	202_G	0.636	0.71
127_S	139_I	0.631	0.70
3_Q	39_V	0.626	0.69
95_V	101_A	0.624	0.69
50_F	54_D	0.623	0.69
21_T	208_E	0.623	0.69
38_D	47_N	0.623	0.69
41_E	46_E	0.621	0.69
54_D	158_S	0.620	0.69
25_V	43_L	0.618	0.68
3_Q	50_F	0.618	0.68
87_R	150_E	0.616	0.68
11_E	41_E	0.616	0.68
168_M	182_R	0.613	0.68
94_V	125_I	0.613	0.68
20_S	143_V	0.612	0.68
126_I	184_F	0.610	0.67
152_A	155_P	0.608	0.67
124_E	127_S	0.607	0.67
181_V	205_I	0.604	0.67
12_E	92_D	0.603	0.67
29_I	44_L	0.601	0.66
16_V	44_L	0.600	0.66
78_L	82_L	0.595	0.66
161_D	190_Q	0.595	0.66
17_T	28_F	0.593	0.65
23_L	31_Q	0.590	0.65
7_Y	10_C	0.588	0.65
143_V	186_G	0.585	0.64
129_F	141_L	0.585	0.64
165_E	168_M	0.584	0.64
100_D	160_A	0.584	0.64
11_E	87_R	0.583	0.64
79_L	100_D	0.581	0.64
144_D	163_Y	0.578	0.63
101_A	104_R	0.578	0.63
79_L	190_Q	0.577	0.63
5_F	140_V	0.574	0.63
46_E	208_E	0.572	0.63
10_C	47_N	0.570	0.62
122_A	128_F	0.570	0.62
55_V	182_R	0.569	0.62
83_M	131_D	0.567	0.62
125_I	128_F	0.566	0.62
23_L	86_D	0.563	0.61
165_E	189_E	0.563	0.61
103_L	120_Q	0.559	0.61
104_R	181_V	0.558	0.61
140_V	148_V	0.557	0.61
172_G	179_I	0.557	0.61
48_L	143_V	0.556	0.60
85_A	89_W	0.555	0.60
43_L	92_D	0.555	0.60
167_E	175_V	0.555	0.60
4_R	11_E	0.554	0.60
82_L	102_I	0.553	0.60
96_V	141_L	0.553	0.60
103_L	181_V	0.551	0.60
81_R	170_E	0.549	0.59
168_M	192_G	0.549	0.59
19_V	79_L	0.548	0.59
27_G	161_D	0.548	0.59
52_E	55_V	0.546	0.59
98_T	163_Y	0.545	0.59
19_V	53_A	0.545	0.59
131_D	135_Q	0.544	0.59
30_D	99_F	0.544	0.59
77_Q	83_M	0.543	0.59
86_D	205_I	0.543	0.59
87_R	138_V	0.543	0.59
94_V	124_E	0.541	0.58
13_E	33_H	0.538	0.58
164_L	181_V	0.537	0.58
13_E	201_S	0.537	0.58
180_A	193_D	0.536	0.58
15_A	49_L	0.531	0.57
28_F	83_M	0.528	0.56
77_Q	94_V	0.521	0.55
28_F	53_A	0.519	0.55
24_T	75_R	0.519	0.55
11_E	48_L	0.516	0.55
29_I	33_H	0.514	0.54
33_H	140_V	0.514	0.54
22_E	161_D	0.511	0.54
86_D	131_D	0.511	0.54
30_D	41_E	0.510	0.54
39_V	46_E	0.510	0.54
11_E	25_V	0.509	0.54
84_E	164_L	0.509	0.54
121_A	126_I	0.509	0.54
145_P	165_E	0.508	0.54
107_P	197_Y	0.508	0.54
83_M	102_I	0.506	0.53
43_L	46_E	0.506	0.53
79_L	184_F	0.504	0.53
17_T	51_L	0.504	0.53
42_H	46_E	0.503	0.53
92_D	165_E	0.501	0.53
9_L	52_E	0.500	0.53

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bs4A	1	0.8873	100	0.429	Contact Map
1tf7A	3	0.8732	99.9	0.496	Contact Map
2dr3A	3	0.939	99.9	0.507	Contact Map
4a8jA	1	0.8592	99.9	0.53	Contact Map
4bwyA	3	0.6995	99.9	0.571	Contact Map
4tl6A	3	0.8873	99.8	0.584	Contact Map
2ztsA	3	0.8685	99.8	0.591	Contact Map
2w0mA	1	0.8404	99.8	0.603	Contact Map
2cvhA	1	0.8122	99.7	0.651	Contact Map
1n0wA	1	0.7653	99.6	0.677	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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