GREMLIN Database
Q9HQY2 - Flagella-related protein H
UniProt: Q9HQY2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 213 (181)
Sequences: 1831 (1309)
Seq/√Len: 97.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_G11_E4.2861.00
9_L93_V3.8611.00
6_S16_V3.6721.00
8_G12_E3.2691.00
25_V29_I3.1571.00
14_N93_V3.0881.00
9_L14_N3.0731.00
40_E44_L3.0321.00
3_Q32_M3.0091.00
87_R135_Q2.8021.00
33_H40_E2.7711.00
6_S95_V2.7111.00
10_C48_L2.7081.00
29_I43_L2.6951.00
200_R206_V2.4621.00
14_N92_D2.4271.00
10_C42_H2.3931.00
85_A88_M2.3931.00
41_E45_N2.3741.00
17_T91_A2.2621.00
31_Q186_G2.2551.00
5_F9_L2.2431.00
15_A92_D2.2101.00
177_R192_G2.1911.00
5_F93_V2.1741.00
176_R196_G2.0701.00
162_V184_F2.0241.00
38_D41_E2.0021.00
2_S95_V1.9561.00
179_I207_I1.9421.00
132_L139_I1.8891.00
175_V180_A1.8631.00
155_P158_S1.8051.00
94_V137_K1.7461.00
6_S93_V1.7451.00
3_Q28_F1.6851.00
84_E88_M1.6251.00
190_Q193_D1.5881.00
190_Q195_I1.5821.00
15_A89_W1.5601.00
4_R8_G1.5211.00
51_L81_R1.5151.00
6_S18_L1.5101.00
15_A90_D1.4881.00
184_F187_M1.4381.00
18_L95_V1.4281.00
39_V48_L1.4040.99
33_H38_D1.3570.99
178_S194_S1.3380.99
23_L185_A1.2820.99
169_V178_S1.2770.99
7_Y37_Y1.2690.99
10_C16_V1.2620.99
49_L89_W1.2520.99
96_V145_P1.1800.98
53_A58_G1.1710.98
7_Y38_D1.1550.98
28_F50_F1.1490.98
98_T142_T1.1450.98
81_R85_A1.1430.98
9_L12_E1.1340.98
16_V95_V1.1060.97
29_I40_E1.1040.97
153_I158_S1.0990.97
82_L86_D1.0910.97
98_T159_I1.0800.97
174_D192_G1.0800.97
47_N50_F1.0690.97
19_V82_L1.0600.96
197_Y205_I1.0590.96
20_S28_F1.0560.96
167_E194_S1.0490.96
124_E128_F1.0460.96
170_E173_N1.0390.96
94_V139_I1.0240.96
15_A47_N1.0080.95
198_S206_V1.0030.95
4_R37_Y1.0010.95
27_G186_G0.9980.95
160_A163_Y0.9920.95
167_E180_A0.9800.95
18_L142_T0.9790.94
188_G192_G0.9750.94
15_A88_M0.9730.94
7_Y11_E0.9680.94
24_T27_G0.9650.94
42_H47_N0.9560.94
94_V132_L0.9530.94
188_G201_S0.9500.94
90_D135_Q0.9450.93
100_D174_D0.9270.93
16_V48_L0.9150.92
20_S58_G0.9140.92
96_V136_G0.9100.92
107_P121_A0.8990.92
198_S208_E0.8850.91
144_D158_S0.8810.91
84_E188_G0.8750.90
95_V142_T0.8730.90
3_Q18_L0.8670.90
18_L50_F0.8600.90
150_E155_P0.8510.89
27_G82_L0.8490.89
16_V92_D0.8450.89
43_L47_N0.8340.88
22_E127_S0.8320.88
198_S201_S0.8300.88
31_Q161_D0.8290.88
165_E182_R0.8290.88
3_Q20_S0.8250.88
30_D33_H0.8110.87
167_E178_S0.8080.87
166_L197_Y0.8070.86
80_K84_E0.8030.86
198_S207_I0.8000.86
167_E170_E0.7950.86
52_E56_D0.7940.86
42_H45_N0.7880.85
199_V207_I0.7860.85
125_I129_F0.7820.85
48_L99_F0.7810.85
170_E194_S0.7790.85
18_L101_A0.7760.84
101_A184_F0.7710.84
153_I156_F0.7620.83
182_R189_E0.7580.83
169_V194_S0.7580.83
122_A125_I0.7500.82
24_T143_V0.7490.82
11_E42_H0.7450.82
140_V160_A0.7440.82
5_F14_N0.7410.81
3_Q133_V0.7410.81
202_G206_V0.7380.81
22_E133_V0.7370.81
177_R197_Y0.7320.81
170_E175_V0.7300.80
107_P120_Q0.7260.80
6_S9_L0.7250.80
98_T161_D0.7240.80
180_A194_S0.7200.80
2_S142_T0.7180.79
75_R106_D0.7170.79
124_E129_F0.7140.79
121_A127_S0.7130.79
18_L143_V0.7080.78
43_L48_L0.7070.78
126_I158_S0.7070.78
154_G158_S0.7070.78
2_S6_S0.7050.78
177_R199_V0.7010.78
22_E122_A0.6890.77
75_R99_F0.6810.76
121_A128_F0.6810.76
86_D137_K0.6800.76
54_D57_T0.6760.75
27_G133_V0.6740.75
93_V138_V0.6740.75
165_E180_A0.6720.75
120_Q205_I0.6690.74
138_V185_A0.6690.74
131_D134_S0.6660.74
23_L28_F0.6650.74
26_R136_G0.6640.74
87_R136_G0.6630.74
120_Q181_V0.6580.73
13_E47_N0.6580.73
168_M175_V0.6560.73
170_E180_A0.6530.73
138_V205_I0.6500.72
28_F159_I0.6500.72
96_V182_R0.6480.72
163_Y180_A0.6410.71
36_S202_G0.6360.71
127_S139_I0.6310.70
3_Q39_V0.6260.69
95_V101_A0.6240.69
50_F54_D0.6230.69
21_T208_E0.6230.69
38_D47_N0.6230.69
41_E46_E0.6210.69
54_D158_S0.6200.69
25_V43_L0.6180.68
3_Q50_F0.6180.68
87_R150_E0.6160.68
11_E41_E0.6160.68
168_M182_R0.6130.68
94_V125_I0.6130.68
20_S143_V0.6120.68
126_I184_F0.6100.67
152_A155_P0.6080.67
124_E127_S0.6070.67
181_V205_I0.6040.67
12_E92_D0.6030.67
29_I44_L0.6010.66
16_V44_L0.6000.66
78_L82_L0.5950.66
161_D190_Q0.5950.66
17_T28_F0.5930.65
23_L31_Q0.5900.65
7_Y10_C0.5880.65
143_V186_G0.5850.64
129_F141_L0.5850.64
165_E168_M0.5840.64
100_D160_A0.5840.64
11_E87_R0.5830.64
79_L100_D0.5810.64
144_D163_Y0.5780.63
101_A104_R0.5780.63
79_L190_Q0.5770.63
5_F140_V0.5740.63
46_E208_E0.5720.63
10_C47_N0.5700.62
122_A128_F0.5700.62
55_V182_R0.5690.62
83_M131_D0.5670.62
125_I128_F0.5660.62
23_L86_D0.5630.61
165_E189_E0.5630.61
103_L120_Q0.5590.61
104_R181_V0.5580.61
140_V148_V0.5570.61
172_G179_I0.5570.61
48_L143_V0.5560.60
85_A89_W0.5550.60
43_L92_D0.5550.60
167_E175_V0.5550.60
4_R11_E0.5540.60
82_L102_I0.5530.60
96_V141_L0.5530.60
103_L181_V0.5510.60
81_R170_E0.5490.59
168_M192_G0.5490.59
19_V79_L0.5480.59
27_G161_D0.5480.59
52_E55_V0.5460.59
98_T163_Y0.5450.59
19_V53_A0.5450.59
131_D135_Q0.5440.59
30_D99_F0.5440.59
77_Q83_M0.5430.59
86_D205_I0.5430.59
87_R138_V0.5430.59
94_V124_E0.5410.58
13_E33_H0.5380.58
164_L181_V0.5370.58
13_E201_S0.5370.58
180_A193_D0.5360.58
15_A49_L0.5310.57
28_F83_M0.5280.56
77_Q94_V0.5210.55
28_F53_A0.5190.55
24_T75_R0.5190.55
11_E48_L0.5160.55
29_I33_H0.5140.54
33_H140_V0.5140.54
22_E161_D0.5110.54
86_D131_D0.5110.54
30_D41_E0.5100.54
39_V46_E0.5100.54
11_E25_V0.5090.54
84_E164_L0.5090.54
121_A126_I0.5090.54
145_P165_E0.5080.54
107_P197_Y0.5080.54
83_M102_I0.5060.53
43_L46_E0.5060.53
79_L184_F0.5040.53
17_T51_L0.5040.53
42_H46_E0.5030.53
92_D165_E0.5010.53
9_L52_E0.5000.53
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3bs4A 1 0.8873 100 0.429 Contact Map
1tf7A 3 0.8732 99.9 0.496 Contact Map
2dr3A 3 0.939 99.9 0.507 Contact Map
4a8jA 1 0.8592 99.9 0.53 Contact Map
4bwyA 3 0.6995 99.9 0.571 Contact Map
4tl6A 3 0.8873 99.8 0.584 Contact Map
2ztsA 3 0.8685 99.8 0.591 Contact Map
2w0mA 1 0.8404 99.8 0.603 Contact Map
2cvhA 1 0.8122 99.7 0.651 Contact Map
1n0wA 1 0.7653 99.6 0.677 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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