Q9HQX0 - HALSA - GREMLIN Contacts

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Q9HQX0 - Chemotaxis protein

UniProt:	Q9HQX0	Sequences: MRRRGVEEYAGYLTLLEEDDDDERAELLDTLSVNVTEFFRDEKVWTALRDVLLELADTVRSIDIWSAACADGREPYSLAMLALDAGLDPRNVSILATDIDEDALARARAGRYESTRTADISDQLGFLDNPQEYVDREGDRAFVVNDRVKDLVTFERHDLITGDPKSGFDLVACRNVCIYIDKQYKLPILDTVSKSLREGGHLVLGQTETLPGEVKERFEAEDPRIRIYSRVADT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	234 (218)
Sequences:	4648 (3633)
Seq/√Len:	246.1

ECOLI - CHER
BACSU - CHER
HALSA - Q9HQX0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
71_D	103_A	3.099	1.00
169_D	197_R	2.816	1.00
121_S	124_L	2.777	1.00
219_E	229_S	2.640	1.00
8_E	11_G	2.591	1.00
12_Y	23_E	2.519	1.00
171_V	192_V	2.517	1.00
65_W	97_T	2.446	1.00
135_D	145_N	2.415	1.00
44_V	203_V	2.317	1.00
137_E	143_V	2.304	1.00
196_L	200_G	2.201	1.00
73_R	116_R	2.194	1.00
111_R	143_V	2.183	1.00
193_S	218_F	2.141	1.00
111_R	141_A	2.102	1.00
97_T	157_H	2.054	1.00
15_L	19_D	2.034	1.00
6_V	15_L	2.032	1.00
146_D	150_D	2.020	1.00
75_P	96_A	2.012	1.00
46_T	50_D	2.003	1.00
84_D	124_L	1.999	1.00
93_S	153_T	1.972	1.00
48_L	170_L	1.945	1.00
101_E	156_R	1.930	1.00
64_I	78_L	1.898	1.00
34_N	103_A	1.877	1.00
83_L	147_R	1.851	1.00
96_A	152_V	1.845	1.00
122_D	131_Q	1.833	1.00
83_L	148_V	1.797	1.00
36_T	71_D	1.782	1.00
77_S	81_L	1.774	1.00
84_D	132_E	1.749	1.00
83_L	151_L	1.744	1.00
7_E	11_G	1.717	1.00
78_L	172_A	1.714	1.00
34_N	70_A	1.669	1.00
104_L	156_R	1.657	1.00
92_V	151_L	1.652	1.00
42_E	46_T	1.645	1.00
159_L	176_V	1.635	1.00
146_D	149_K	1.618	1.00
138_G	141_A	1.540	1.00
124_L	133_Y	1.535	1.00
187_P	191_T	1.534	1.00
95_L	155_E	1.510	1.00
82_A	92_V	1.503	1.00
173_C	192_V	1.494	1.00
177_C	189_L	1.429	1.00
49_R	84_D	1.425	1.00
105_A	109_A	1.419	1.00
95_L	168_F	1.410	1.00
171_V	196_L	1.402	1.00
46_T	49_R	1.397	1.00
75_P	94_I	1.393	1.00
177_C	188_I	1.377	1.00
34_N	100_D	1.376	1.00
80_M	84_D	1.373	1.00
15_L	23_E	1.369	1.00
79_A	151_L	1.362	1.00
190_D	217_R	1.356	1.00
117_T	130_P	1.351	1.00
201_H	221_E	1.341	1.00
160_I	184_Y	1.341	1.00
79_A	94_I	1.338	1.00
16_L	27_L	1.323	1.00
134_V	144_V	1.310	1.00
80_M	133_Y	1.294	1.00
64_I	82_A	1.289	1.00
110_G	144_V	1.282	1.00
67_A	159_L	1.276	1.00
83_L	133_Y	1.273	1.00
75_P	152_V	1.260	1.00
29_D	100_D	1.260	1.00
29_D	102_D	1.258	1.00
105_A	108_R	1.250	1.00
186_L	190_D	1.249	1.00
68_A	176_V	1.238	1.00
66_S	172_A	1.236	1.00
39_F	77_S	1.231	1.00
182_K	185_K	1.229	1.00
37_E	119_D	1.211	1.00
114_S	136_R	1.207	1.00
66_S	78_L	1.205	1.00
41_D	44_V	1.198	1.00
148_V	151_L	1.194	1.00
51_V	54_E	1.193	1.00
63_D	93_S	1.182	1.00
60_R	90_R	1.161	1.00
167_G	197_R	1.157	1.00
181_D	184_Y	1.157	1.00
101_E	105_A	1.155	1.00
164_P	188_I	1.142	1.00
11_G	14_T	1.128	1.00
69_C	75_P	1.126	1.00
114_S	142_F	1.125	1.00
70_A	103_A	1.122	1.00
144_V	148_V	1.120	1.00
113_E	116_R	1.119	1.00
14_T	18_E	1.119	1.00
32_S	99_I	1.117	1.00
49_R	85_A	1.108	1.00
13_L	17_E	1.108	1.00
221_E	229_S	1.104	1.00
177_C	204_L	1.102	1.00
76_Y	149_K	1.097	1.00
39_F	124_L	1.095	1.00
122_D	130_P	1.086	1.00
83_L	92_V	1.076	1.00
52_L	201_H	1.075	1.00
97_T	155_E	1.053	1.00
66_S	69_C	1.047	1.00
176_V	180_I	1.040	1.00
56_A	62_I	1.035	1.00
135_D	143_V	1.034	1.00
47_A	203_V	1.023	1.00
143_V	149_K	1.014	1.00
80_M	124_L	1.013	1.00
137_E	141_A	1.012	1.00
115_T	118_A	1.005	1.00
43_K	46_T	1.002	1.00
61_S	91_N	0.991	1.00
59_V	169_D	0.989	1.00
48_L	78_L	0.981	1.00
25_A	101_E	0.967	1.00
106_R	109_A	0.966	1.00
190_D	194_K	0.961	1.00
47_A	51_V	0.960	1.00
12_Y	27_L	0.960	1.00
214_V	217_R	0.953	1.00
172_A	203_V	0.949	1.00
80_M	134_V	0.946	1.00
29_D	101_E	0.941	1.00
111_R	137_E	0.939	1.00
32_S	100_D	0.935	1.00
148_V	152_V	0.934	1.00
12_Y	15_L	0.933	1.00
76_Y	154_F	0.932	1.00
84_D	133_Y	0.925	1.00
47_A	227_I	0.925	1.00
67_A	176_V	0.924	1.00
55_L	201_H	0.922	1.00
49_R	81_L	0.922	1.00
4_R	15_L	0.919	1.00
147_R	150_D	0.915	1.00
158_D	161_T	0.902	1.00
41_D	206_Q	0.897	1.00
123_Q	132_E	0.897	1.00
53_L	82_A	0.886	1.00
143_V	146_D	0.885	1.00
61_S	93_S	0.885	1.00
100_D	103_A	0.876	0.99
68_A	192_V	0.872	0.99
117_T	120_I	0.857	0.99
22_D	26_E	0.856	0.99
51_V	55_L	0.851	0.99
192_V	218_F	0.850	0.99
23_E	26_E	0.845	0.99
9_Y	13_L	0.844	0.99
4_R	23_E	0.842	0.99
199_G	229_S	0.838	0.99
220_A	223_P	0.831	0.99
79_A	148_V	0.824	0.99
51_V	222_D	0.821	0.99
187_P	190_D	0.815	0.99
53_L	85_A	0.813	0.99
114_S	130_P	0.803	0.99
4_R	26_E	0.803	0.99
117_T	142_F	0.801	0.99
44_V	206_Q	0.796	0.99
136_R	142_F	0.795	0.99
168_F	171_V	0.789	0.99
103_A	107_A	0.787	0.99
201_H	227_I	0.783	0.99
61_S	90_R	0.778	0.99
39_F	120_I	0.774	0.99
19_D	22_D	0.771	0.99
95_L	165_K	0.765	0.99
180_I	184_Y	0.761	0.99
124_L	130_P	0.761	0.99
196_L	218_F	0.757	0.99
52_L	56_A	0.754	0.98
157_H	163_D	0.754	0.98
204_L	210_L	0.752	0.98
3_R	26_E	0.748	0.98
130_P	134_V	0.746	0.98
107_A	154_F	0.733	0.98
45_W	77_S	0.720	0.98
184_Y	188_I	0.718	0.98
32_S	103_A	0.710	0.98
27_L	100_D	0.710	0.98
123_Q	131_Q	0.701	0.98
15_L	18_E	0.700	0.98
191_T	194_K	0.700	0.98
71_D	106_R	0.698	0.98
106_R	116_R	0.697	0.97
10_A	13_L	0.697	0.97
134_V	142_F	0.697	0.97
165_K	168_F	0.696	0.97
59_V	197_R	0.695	0.97
193_S	217_R	0.692	0.97
136_R	141_A	0.685	0.97
183_Q	186_L	0.681	0.97
63_D	168_F	0.678	0.97
63_D	165_K	0.676	0.97
81_L	85_A	0.674	0.97
102_D	105_A	0.672	0.97
102_D	106_R	0.670	0.97
113_E	141_A	0.668	0.97
114_S	117_T	0.665	0.97
114_S	118_A	0.661	0.97
62_I	90_R	0.661	0.97
25_A	29_D	0.660	0.97
26_E	29_D	0.660	0.97
190_D	214_V	0.654	0.96
52_L	170_L	0.653	0.96
109_A	143_V	0.653	0.96
112_Y	144_V	0.651	0.96
167_G	195_S	0.649	0.96
66_S	75_P	0.648	0.96
67_A	192_V	0.647	0.96
113_E	117_T	0.645	0.96
54_E	201_H	0.645	0.96
60_R	197_R	0.645	0.96
64_I	170_L	0.645	0.96
175_N	179_Y	0.643	0.96
185_K	189_L	0.643	0.96
48_L	81_L	0.643	0.96
68_A	173_C	0.639	0.96
203_V	227_I	0.638	0.96
189_L	214_V	0.637	0.96
193_S	230_R	0.635	0.96
106_R	112_Y	0.631	0.96
186_L	216_E	0.630	0.95
120_I	134_V	0.629	0.95
36_T	70_A	0.626	0.95
35_V	185_K	0.626	0.95
124_L	132_E	0.625	0.95
52_L	203_V	0.625	0.95
136_R	139_D	0.624	0.95
48_L	172_A	0.624	0.95
84_D	123_Q	0.623	0.95
40_R	179_Y	0.622	0.95
101_E	108_R	0.621	0.95
60_R	89_P	0.618	0.95
76_Y	152_V	0.614	0.95
157_H	161_T	0.611	0.95
120_I	124_L	0.609	0.95
130_P	133_Y	0.607	0.94
178_I	205_G	0.606	0.94
12_Y	16_L	0.605	0.94
178_I	207_T	0.605	0.94
45_W	48_L	0.604	0.94
156_R	161_T	0.595	0.94
30_T	33_V	0.594	0.94
52_L	82_A	0.589	0.94
7_E	10_A	0.587	0.93
37_E	185_K	0.585	0.93
10_A	14_T	0.584	0.93
62_I	82_A	0.584	0.93
67_A	172_A	0.580	0.93
68_A	97_T	0.579	0.93
55_L	229_S	0.577	0.93
35_V	100_D	0.576	0.93
33_V	100_D	0.576	0.93
65_W	68_A	0.572	0.93
87_L	90_R	0.572	0.93
201_H	229_S	0.571	0.92
165_K	195_S	0.569	0.92
94_I	151_L	0.569	0.92
182_K	186_L	0.566	0.92
185_K	226_R	0.565	0.92
164_P	191_T	0.563	0.92
103_A	106_R	0.562	0.92
38_F	112_Y	0.561	0.92
48_L	53_L	0.561	0.92
22_D	25_A	0.560	0.92
49_R	124_L	0.558	0.92
21_D	25_A	0.557	0.92
21_D	24_R	0.556	0.91
29_D	34_N	0.553	0.91
4_R	12_Y	0.553	0.91
14_T	17_E	0.552	0.91
157_H	195_S	0.550	0.91
68_A	188_I	0.547	0.91
106_R	113_E	0.547	0.91
23_E	27_L	0.546	0.91
33_V	179_Y	0.546	0.91
53_L	201_H	0.544	0.91
96_A	107_A	0.544	0.91
40_R	175_N	0.543	0.91
160_I	188_I	0.543	0.91
189_L	210_L	0.542	0.90
82_A	94_I	0.541	0.90
39_F	81_L	0.538	0.90
53_L	56_A	0.534	0.90
80_M	148_V	0.532	0.90
220_A	228_Y	0.531	0.90
80_M	144_V	0.531	0.90
115_T	185_K	0.527	0.89
47_A	222_D	0.526	0.89
171_V	195_S	0.524	0.89
64_I	94_I	0.524	0.89
43_K	206_Q	0.523	0.89
108_R	155_E	0.522	0.89
26_E	30_T	0.520	0.89
35_V	226_R	0.520	0.89
69_C	107_A	0.520	0.89
50_D	85_A	0.519	0.88
33_V	68_A	0.519	0.88
184_Y	187_P	0.518	0.88
188_I	191_T	0.516	0.88
44_V	185_K	0.516	0.88
6_V	12_Y	0.515	0.88
59_V	90_R	0.514	0.88
31_L	158_D	0.513	0.88
58_T	199_G	0.512	0.88
70_A	178_I	0.507	0.87
158_D	181_D	0.505	0.87
34_N	185_K	0.505	0.87
54_E	85_A	0.505	0.87
135_D	138_G	0.502	0.87
64_I	172_A	0.502	0.87
6_V	11_G	0.501	0.87
80_M	83_L	0.500	0.87

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1af7A	1	0.9402	100	0.316	Contact Map
3i53A	2	0.8077	99.7	0.753	Contact Map
4qnuA	2	0.8077	99.7	0.755	Contact Map
3gwzA	3	0.8162	99.7	0.758	Contact Map
4z2yA	2	0.7436	99.7	0.766	Contact Map
2ip2A	2	0.812	99.6	0.778	Contact Map
4gqbA	4	0.8376	99.6	0.778	Contact Map
1qzzA	2	0.7949	99.6	0.782	Contact Map
1o9gA	1	0.9145	99.5	0.786	Contact Map
2r3sA	4	0.8248	99.5	0.787	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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