GREMLIN Database
Q9HQW9 - Chemotaxis protein
UniProt: Q9HQW9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 109 (104)
Sequences: 1049 (819)
Seq/√Len: 80.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
65_E78_S5.5681.00
39_A73_I3.7861.00
88_V97_V3.6891.00
27_L32_A3.1051.00
12_P22_E2.6551.00
61_V80_T2.6321.00
41_L64_A2.2791.00
41_L75_L2.2051.00
26_A29_R2.1351.00
46_T55_S2.1031.00
28_L34_P2.1031.00
16_V64_A2.0471.00
55_S58_S1.9131.00
21_D67_A1.8451.00
27_L37_L1.7451.00
24_V71_A1.7101.00
66_R70_D1.6861.00
91_S94_S1.6491.00
25_S29_R1.6261.00
16_V63_A1.5170.99
22_E25_S1.4650.99
20_L67_A1.4560.99
39_A68_L1.4540.99
33_S36_T1.4360.99
22_E26_A1.4320.99
21_D25_S1.3400.99
42_A97_V1.3360.98
62_S66_R1.3050.98
38_T76_L1.2890.98
67_A70_D1.2660.98
39_A74_E1.2330.97
13_A22_E1.2300.97
67_A71_A1.2100.97
65_E75_L1.1980.97
52_I55_S1.1960.97
5_A18_S1.1940.97
34_P71_A1.1920.97
46_T54_D1.1910.97
24_V37_L1.1700.96
63_A67_A1.1640.96
91_S96_D1.1630.96
38_T95_G1.1500.96
32_A37_L1.1470.96
25_S71_A1.0900.95
68_L74_E1.0860.95
91_S98_T1.0850.95
65_E80_T1.0750.94
28_L37_L1.0680.94
20_L23_M1.0600.94
38_T90_F1.0480.94
21_D71_A1.0130.92
40_K77_A1.0000.92
79_E101_R0.9600.90
42_A87_S0.9550.90
27_L92_P0.9530.90
25_S28_L0.9360.89
26_A30_L0.9280.89
13_A19_G0.9120.88
32_A36_T0.8880.86
58_S62_S0.8790.86
42_A88_V0.8780.86
38_T74_E0.8680.85
17_D67_A0.8640.85
73_I76_L0.8520.84
84_S102_V0.8510.84
68_L73_I0.8470.84
42_A99_I0.8450.83
88_V99_I0.8440.83
4_E7_G0.8440.83
89_S97_V0.8360.83
61_V81_G0.8290.82
12_P15_Y0.8190.81
87_S100_D0.8170.81
16_V56_V0.7890.79
28_L33_S0.7870.79
84_S103_D0.7760.78
14_K47_M0.7730.78
34_P69_A0.7630.77
1_M101_R0.7560.76
16_V48_L0.7510.76
45_S99_I0.7480.75
14_K85_G0.7440.75
41_L80_T0.7290.73
21_D90_F0.7290.73
85_G102_V0.7240.73
90_F95_G0.7170.72
1_M13_A0.7060.71
46_T82_G0.6980.70
49_D54_D0.6940.70
41_L78_S0.6810.68
41_L65_E0.6780.68
82_G101_R0.6720.67
45_S91_S0.6720.67
20_L63_A0.6710.67
17_D59_R0.6710.67
24_V67_A0.6680.67
79_E99_I0.6650.66
47_M59_R0.6620.66
84_S101_R0.6520.65
64_A90_F0.6470.64
13_A76_L0.6460.64
48_L80_T0.6460.64
19_G49_D0.6430.64
29_R72_D0.6350.63
10_D38_T0.6340.63
42_A79_E0.6250.62
66_R69_A0.6170.61
59_R87_S0.6140.60
35_S70_D0.6090.60
24_V27_L0.6080.59
33_S67_A0.6070.59
39_A76_L0.6050.59
17_D22_E0.5980.58
21_D24_V0.5970.58
25_S35_S0.5950.58
42_A101_R0.5950.58
14_K48_L0.5940.58
70_D77_A0.5940.58
27_L62_S0.5900.57
5_A17_D0.5890.57
31_G95_G0.5830.56
88_V92_P0.5770.56
1_M59_R0.5760.55
62_S69_A0.5760.55
84_S104_A0.5720.55
6_D66_R0.5700.55
24_V33_S0.5690.55
24_V28_L0.5650.54
19_G96_D0.5610.54
54_D58_S0.5610.54
41_L61_V0.5590.53
25_S34_P0.5580.53
20_L25_S0.5550.53
58_S99_I0.5510.52
6_D15_Y0.5430.51
1_M17_D0.5390.51
24_V34_P0.5370.50
56_V88_V0.5350.50
22_E61_V0.5340.50
29_R66_R0.5330.50
28_L35_S0.5300.49
52_I58_S0.5260.49
90_F97_V0.5230.49
34_P96_D0.5220.48
50_L54_D0.5220.48
88_V102_V0.5210.48
10_D53_G0.5170.48
81_G89_S0.5150.48
87_S90_F0.5140.47
50_L53_G0.5140.47
8_P34_P0.5130.47
19_G23_M0.5100.47
46_T100_D0.5070.46
87_S101_R0.5060.46
16_V67_A0.5010.46
4_E66_R0.5000.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2f9zC 1 0.945 100 0.109 Contact Map
2furA 2 0.4954 17.7 0.924 Contact Map
3ba3A 2 0.4679 17.3 0.925 Contact Map
3gonA 1 0.6606 16.2 0.925 Contact Map
2yxzA 2 0.9358 14.5 0.927 Contact Map
3ec6A 2 0.4771 12.9 0.929 Contact Map
3hdpA 2 0.5963 12.3 0.929 Contact Map
3g3tA 1 0.5321 12 0.93 Contact Map
4ad9A 4 0.7706 11.2 0.93 Contact Map
3v8hA 2 0.8073 10.8 0.931 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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