GREMLIN Database
Q9HQU8 - Acetyl-CoA synthetase
UniProt: Q9HQU8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 667 (503)
Sequences: 54311 (38327)
Seq/√Len: 1708.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
270_M287_T4.2071.00
476_L523_A3.3481.00
560_V603_S3.2931.00
185_A275_Y3.0361.00
492_N495_R2.9751.00
137_V165_A2.9621.00
126_N162_R2.9441.00
289_S487_Q2.9181.00
457_D479_Q2.8041.00
141_D189_E2.7971.00
122_H162_R2.7621.00
142_I168_S2.7201.00
144_T188_S2.7141.00
524_K532_T2.5921.00
312_T338_T2.5361.00
103_E338_T2.5161.00
100_A115_T2.4761.00
90_D122_H2.4041.00
187_D491_E2.3861.00
131_G135_M2.3691.00
461_I477_T2.3411.00
96_R99_E2.3271.00
475_H518_F2.2971.00
557_I582_A2.2501.00
473_A522_G2.2431.00
92_H96_R2.2201.00
356_E360_S2.2181.00
156_A192_V2.1951.00
542_N547_R2.1711.00
462_D466_D2.1611.00
459_R467_D2.1491.00
559_D607_A2.1361.00
185_A492_N2.1311.00
311_D393_R2.1251.00
565_E625_K2.1211.00
140_D269_D2.1071.00
189_E222_S2.0751.00
139_E269_D2.0731.00
181_T282_Q2.0611.00
558_V566_A2.0361.00
266_D269_D2.0341.00
128_F155_I2.0281.00
526_D532_T2.0081.00
122_H126_N1.9831.00
104_W151_P1.9801.00
493_D497_I1.9661.00
539_D633_R1.9541.00
124_E155_I1.9511.00
83_N91_R1.9461.00
98_D119_A1.9381.00
495_R498_D1.9221.00
311_D364_T1.9121.00
477_T518_F1.8611.00
526_D530_Y1.8521.00
180_S184_N1.8401.00
125_V162_R1.8401.00
105_V113_N1.8351.00
581_Y618_V1.8351.00
135_M223_D1.8071.00
119_A123_R1.8061.00
632_M635_L1.7841.00
473_A534_L1.7831.00
103_E361_Y1.7671.00
91_R95_E1.7671.00
103_E115_T1.7601.00
362_E391_S1.7571.00
160_C165_A1.7491.00
133_R163_L1.7451.00
289_S292_G1.7411.00
340_M363_A1.7311.00
554_E568_V1.7191.00
138_G141_D1.7111.00
420_P438_L1.7001.00
448_S532_T1.6881.00
404_P408_T1.6861.00
568_V582_A1.6861.00
460_V523_A1.6861.00
270_M487_Q1.6581.00
470_G525_V1.6531.00
140_D487_Q1.6431.00
525_V531_I1.6291.00
92_H95_E1.6271.00
148_P194_C1.6141.00
585_L623_L1.6001.00
558_V565_E1.5921.00
564_A587_T1.5881.00
301_S335_L1.5841.00
543_V548_L1.5841.00
161_A271_L1.5811.00
435_V458_A1.5741.00
562_G599_R1.5661.00
292_G431_G1.5661.00
90_D162_R1.5521.00
126_N130_A1.5451.00
494_E498_D1.5441.00
572_D578_E1.5361.00
371_T400_E1.5321.00
100_A103_E1.5301.00
99_E310_S1.5291.00
116_Y155_I1.5231.00
116_Y151_P1.5201.00
100_A338_T1.5191.00
458_A478_I1.5171.00
584_V619_F1.5081.00
353_R356_E1.5041.00
93_L122_H1.4981.00
142_I166_P1.4961.00
459_R477_T1.4951.00
273_L490_Y1.4901.00
469_A472_R1.4901.00
584_V617_V1.4841.00
268_T291_G1.4781.00
117_T120_Q1.4741.00
583_Y636_L1.4671.00
144_T170_V1.4661.00
524_K534_L1.4621.00
143_V165_A1.4591.00
408_T412_T1.4571.00
154_P329_V1.4521.00
556_A607_A1.4511.00
635_L638_D1.4501.00
131_G251_V1.4471.00
434_M478_I1.4471.00
97_G119_A1.4381.00
142_I273_L1.4361.00
287_T490_Y1.4311.00
144_T183_M1.4241.00
523_A533_V1.4201.00
186_A275_Y1.4161.00
479_Q516_V1.4161.00
101_A121_L1.4131.00
122_H260_V1.4071.00
137_V141_D1.4071.00
598_E602_A1.3991.00
350_D353_R1.3961.00
183_M188_S1.3881.00
308_K311_D1.3841.00
287_T488_T1.3821.00
166_P270_M1.3741.00
603_S607_A1.3601.00
128_F159_A1.3551.00
143_V160_C1.3531.00
569_V583_Y1.3471.00
314_F363_A1.3471.00
601_V617_V1.3451.00
486_L500_Y1.3451.00
137_V143_V1.3391.00
159_A163_L1.3371.00
562_G590_H1.3351.00
586_T619_F1.3331.00
552_E612_A1.3321.00
311_D365_Q1.3261.00
170_V179_L1.3251.00
323_T367_Y1.3141.00
312_T363_A1.3121.00
332_P337_T1.3081.00
359_E387_H1.3081.00
84_A87_N1.3071.00
601_V605_E1.3041.00
368_T373_I1.2991.00
275_Y285_G1.2961.00
168_S186_A1.2901.00
312_T340_M1.2901.00
583_Y637_E1.2871.00
357_L361_Y1.2861.00
541_V550_T1.2851.00
185_A491_E1.2841.00
427_Q517_Y1.2831.00
602_A606_D1.2751.00
499_E517_Y1.2741.00
104_W114_R1.2711.00
437_G530_Y1.2711.00
265_R269_D1.2701.00
582_A617_V1.2581.00
153_L319_I1.2561.00
195_D228_D1.2551.00
462_D468_V1.2541.00
342_Y357_L1.2541.00
397_T402_I1.2531.00
570_G578_E1.2521.00
185_A282_Q1.2501.00
128_F192_V1.2491.00
522_G537_V1.2481.00
145_L156_A1.2431.00
190_Y223_D1.2401.00
124_E127_E1.2391.00
115_T361_Y1.2341.00
373_I395_L1.2261.00
546_H611_I1.2251.00
184_N282_Q1.2181.00
358_V391_S1.2151.00
268_T289_S1.2141.00
124_E152_E1.2121.00
495_R499_E1.2081.00
142_I490_Y1.1931.00
181_T185_A1.1921.00
603_S606_D1.1901.00
445_K528_D1.1891.00
340_M357_L1.1881.00
83_N87_N1.1861.00
378_K409_W1.1861.00
473_A524_K1.1801.00
626_T632_M1.1791.00
123_R127_E1.1781.00
620_A623_L1.1751.00
597_R601_V1.1631.00
311_D337_T1.1611.00
366_L392_L1.1591.00
437_G448_S1.1531.00
451_R530_Y1.1511.00
463_T537_V1.1511.00
137_V190_Y1.1491.00
176_A180_S1.1471.00
292_G485_M1.1471.00
291_G483_P1.1421.00
147_M227_V1.1401.00
158_L333_L1.1401.00
605_E613_R1.1381.00
365_Q394_L1.1351.00
276_T286_V1.1321.00
181_T275_Y1.1271.00
267_A291_G1.1231.00
597_R619_F1.1201.00
131_G134_E1.1191.00
403_N406_A1.1181.00
597_R617_V1.1151.00
120_Q123_R1.1141.00
287_T487_Q1.1081.00
114_R151_P1.1061.00
583_Y620_A1.1001.00
105_V114_R1.0941.00
567_A623_L1.0931.00
141_D165_A1.0881.00
286_V486_L1.0871.00
105_V343_E1.0821.00
459_R516_V1.0811.00
176_A213_G1.0811.00
456_V484_G1.0811.00
90_D126_N1.0781.00
288_H292_G1.0781.00
573_H579_A1.0761.00
121_L158_L1.0681.00
125_V159_A1.0661.00
565_E585_L1.0621.00
295_S455_G1.0591.00
317_A323_T1.0571.00
543_V570_G1.0491.00
579_A615_E1.0461.00
116_Y124_E1.0451.00
571_G581_Y1.0451.00
556_A604_V1.0441.00
374_R406_A1.0431.00
100_A117_T1.0431.00
605_E610_P1.0401.00
410_Y414_I1.0371.00
556_A559_D1.0351.00
468_V472_R1.0341.00
194_C197_Y1.0341.00
89_L93_L1.0301.00
476_L533_V1.0261.00
134_E255_H1.0261.00
273_L285_G1.0261.00
146_Y179_L1.0221.00
130_A261_S1.0221.00
114_R124_E1.0221.00
589_D592_A1.0171.00
103_E340_M1.0161.00
122_H125_V1.0161.00
478_I519_P1.0141.00
277_S628_S1.0121.00
599_R602_A1.0121.00
560_V599_R1.0121.00
435_V531_I1.0111.00
352_D379_W1.0111.00
130_A257_G1.0061.00
540_V549_G1.0031.00
460_V468_V1.0021.00
479_Q514_D1.0021.00
583_Y640_A1.0011.00
102_I154_P0.9951.00
458_A476_L0.9951.00
296_W432_G0.9941.00
137_V163_L0.9931.00
113_N360_S0.9911.00
86_A265_R0.9871.00
560_V600_I0.9851.00
623_L631_I0.9841.00
579_A616_A0.9841.00
178_A612_A0.9831.00
129_A162_R0.9821.00
312_T364_T0.9811.00
572_D575_L0.9791.00
174_F182_R0.9781.00
274_M428_T0.9771.00
367_Y433_M0.9761.00
600_I617_V0.9751.00
452_P458_A0.9751.00
99_E338_T0.9711.00
313_Y332_P0.9701.00
142_I187_D0.9701.00
121_L155_I0.9681.00
512_S518_F0.9661.00
551_M555_S0.9661.00
581_Y616_A0.9631.00
475_H537_V0.9631.00
554_E633_R0.9611.00
458_A531_I0.9601.00
559_D603_S0.9511.00
449_A533_V0.9511.00
409_W413_H0.9461.00
445_K530_Y0.9451.00
128_F156_A0.9371.00
415_G419_C0.9351.00
314_F342_Y0.9331.00
604_V613_R0.9321.00
609_G612_A0.9321.00
396_G424_T0.9311.00
322_I427_Q0.9281.00
123_R258_A0.9271.00
135_M190_Y0.9231.00
133_R261_S0.9231.00
130_A133_R0.9211.00
177_D181_T0.9201.00
402_I407_W0.9161.00
295_S483_P0.9101.00
522_G535_G0.9081.00
102_I151_P0.9081.00
195_D229_R0.9061.00
477_T516_V0.9051.00
177_D607_A0.9051.00
462_D472_R0.9031.00
116_Y121_L0.9011.00
430_T517_Y0.9001.00
332_P339_T0.9001.00
602_A605_E0.8991.00
91_R94_D0.8981.00
177_D180_S0.8981.00
86_A290_T0.8951.00
634_R638_D0.8941.00
104_W113_N0.8941.00
593_S599_R0.8941.00
340_M361_Y0.8921.00
132_L160_C0.8921.00
297_A334_A0.8921.00
564_A585_L0.8891.00
288_H486_L0.8891.00
101_A118_Y0.8891.00
377_M409_W0.8881.00
89_L158_L0.8871.00
583_Y639_I0.8871.00
121_L125_V0.8851.00
88_C298_A0.8811.00
181_T492_N0.8791.00
620_A639_I0.8791.00
151_P155_I0.8781.00
465_G477_T0.8761.00
133_R138_G0.8721.00
374_R403_N0.8711.00
460_V531_I0.8661.00
131_G255_H0.8631.00
448_S530_Y0.8621.00
144_T191_L0.8601.00
572_D576_K0.8571.00
571_G616_A0.8571.00
288_H431_G0.8541.00
90_D94_D0.8471.00
463_T475_H0.8461.00
562_G587_T0.8431.00
430_T434_M0.8391.00
132_L192_V0.8361.00
114_R152_E0.8361.00
635_L639_I0.8351.00
89_L122_H0.8331.00
171_F320_G0.8311.00
168_S188_S0.8281.00
539_D551_M0.8221.00
181_T184_N0.8211.00
93_L97_G0.8211.00
301_S331_G0.8211.00
327_Y367_Y0.8201.00
584_V600_I0.8201.00
155_I159_A0.8171.00
113_N361_Y0.8161.00
271_L293_Y0.8161.00
459_R479_Q0.8151.00
310_S364_T0.8131.00
99_E309_P0.8121.00
86_A161_A0.8101.00
316_S369_A0.8081.00
424_T433_M0.8071.00
430_T485_M0.8061.00
195_D226_V0.8061.00
480_K485_M0.8031.00
581_Y640_A0.7981.00
373_I410_Y0.7981.00
103_E312_T0.7971.00
87_N90_D0.7961.00
544_S576_K0.7921.00
152_E194_C0.7921.00
144_T186_A0.7911.00
296_W327_Y0.7911.00
154_P341_L0.7891.00
405_R409_W0.7871.00
271_L290_T0.7871.00
409_W412_T0.7851.00
120_Q124_E0.7841.00
193_T197_Y0.7841.00
270_M289_S0.7841.00
87_N91_R0.7831.00
265_R290_T0.7801.00
323_T398_V0.7791.00
316_S372_A0.7761.00
98_D117_T0.7751.00
539_D554_E0.7741.00
156_A160_C0.7731.00
84_A290_T0.7701.00
567_A631_I0.7681.00
307_I337_T0.7651.00
473_A537_V0.7651.00
307_I365_Q0.7631.00
471_G527_D0.7621.00
193_T226_V0.7611.00
127_E131_G0.7581.00
367_Y424_T0.7581.00
157_M167_H0.7561.00
367_Y398_V0.7561.00
312_T362_E0.7551.00
430_T478_I0.7541.00
373_I397_T0.7541.00
394_L422_V0.7541.00
144_T168_S0.7511.00
369_A372_A0.7491.00
322_I432_G0.7481.00
461_I467_D0.7481.00
358_V363_A0.7471.00
177_D282_Q0.7461.00
494_E497_I0.7461.00
88_C92_H0.7461.00
88_C294_L0.7461.00
147_M150_V0.7461.00
100_A104_W0.7451.00
130_A258_A0.7451.00
136_G165_A0.7451.00
541_V580_V0.7451.00
458_A523_A0.7431.00
96_R119_A0.7421.00
479_Q515_W0.7421.00
134_E254_A0.7401.00
82_L291_G0.7401.00
128_F132_L0.7401.00
272_F288_H0.7371.00
374_R409_W0.7371.00
349_P372_A0.7371.00
572_D577_G0.7371.00
496_F500_Y0.7371.00
130_A260_V0.7371.00
328_I367_Y0.7361.00
178_A552_E0.7351.00
551_M554_E0.7351.00
184_N220_A0.7331.00
147_M192_V0.7301.00
599_R603_S0.7271.00
374_R405_R0.7271.00
557_I566_A0.7271.00
157_M329_V0.7261.00
358_V366_L0.7261.00
543_V580_V0.7251.00
550_T568_V0.7241.00
296_W431_G0.7241.00
359_E388_D0.7241.00
133_R263_V0.7241.00
182_R285_G0.7211.00
352_D356_E0.7171.00
142_I491_E0.7171.00
190_Y225_V0.7161.00
88_C334_A0.7141.00
453_L456_V0.7121.00
86_A90_D0.7111.00
476_L531_I0.7111.00
422_V438_L0.7111.00
445_K526_D0.7111.00
121_L154_P0.7101.00
405_R408_T0.7091.00
92_H336_G0.7091.00
402_I421_I0.7081.00
133_R262_P0.7081.00
133_R260_V0.7071.00
148_P196_G0.7061.00
126_N260_V0.7061.00
523_A534_L0.7051.00
586_T592_A0.7041.00
359_E390_S0.6991.00
132_L190_Y0.6991.00
296_W433_M0.6991.00
147_M156_A0.6971.00
169_V274_M0.6951.00
327_Y433_M0.6951.00
562_G586_T0.6941.00
211_L215_D0.6921.00
260_V263_V0.6911.00
571_G579_A0.6911.00
127_E258_A0.6911.00
518_F537_V0.6901.00
638_D641_N0.6881.00
146_Y191_L0.6881.00
586_T590_H0.6881.00
193_T224_V0.6871.00
129_A163_L0.6871.00
598_E601_V0.6851.00
146_Y197_Y0.6821.00
395_L410_Y0.6821.00
356_E359_E0.6821.00
94_D122_H0.6801.00
588_D591_D0.6791.00
364_T393_R0.6791.00
147_M153_L0.6791.00
394_L420_P0.6791.00
523_A531_I0.6791.00
300_T327_Y0.6791.00
423_D447_G0.6761.00
187_D220_A0.6761.00
152_E155_I0.6741.00
314_F357_L0.6731.00
392_L395_L0.6711.00
160_C163_L0.6691.00
143_V190_Y0.6681.00
174_F320_G0.6681.00
308_K393_R0.6671.00
460_V525_V0.6671.00
381_V409_W0.6671.00
250_A253_A0.6671.00
387_H390_S0.6641.00
342_Y354_L0.6631.00
314_F358_V0.6611.00
460_V476_L0.6611.00
138_G189_E0.6591.00
500_Y518_F0.6591.00
315_C328_I0.6581.00
139_E263_V0.6561.00
401_P533_V0.6551.00
338_T361_Y0.6491.00
553_I580_V0.6491.00
160_C167_H0.6491.00
597_R616_A0.6481.00
166_P273_L0.6461.00
187_D490_Y0.6441.00
567_A636_L0.6411.00
130_A259_S0.6391.00
543_V578_E0.6381.00
303_A454_P0.6381.00
604_V608_I0.6371.00
118_Y337_T0.6351.00
296_W300_T0.6351.00
145_L167_H0.6341.00
425_W434_M0.6331.00
478_I485_M0.6311.00
398_V433_M0.6311.00
102_I116_Y0.6301.00
115_T338_T0.6301.00
131_G252_V0.6291.00
470_G527_D0.6291.00
100_A312_T0.6251.00
569_V640_A0.6241.00
410_Y421_I0.6241.00
569_V637_E0.6241.00
147_M194_C0.6231.00
492_N496_F0.6211.00
185_A490_Y0.6201.00
129_A159_A0.6201.00
643_A646_G0.6191.00
315_C341_L0.6181.00
554_E582_A0.6171.00
315_C339_T0.6151.00
585_L622_E0.6151.00
374_R378_K0.6151.00
402_I423_D0.6141.00
601_V604_V0.6131.00
142_I188_S0.6111.00
556_A603_S0.6101.00
318_D321_W0.6101.00
317_A367_Y0.6101.00
461_I516_V0.6091.00
480_K484_G0.6091.00
424_T436_T0.6081.00
327_Y424_T0.6071.00
359_E391_S0.6071.00
226_V230_L0.6071.00
252_V255_H0.6041.00
563_V584_V0.6041.00
158_L330_Y0.6041.00
385_D413_H0.6021.00
366_L395_L0.6021.00
358_V362_E0.6001.00
492_N498_D0.6001.00
457_D514_D0.5991.00
96_R309_P0.5991.00
354_L372_A0.5981.00
307_I311_D0.5981.00
297_A331_G0.5961.00
323_T432_G0.5961.00
261_S265_R0.5941.00
102_I339_T0.5941.00
135_M251_V0.5941.00
356_E387_H0.5941.00
571_G638_D0.5931.00
139_E265_R0.5931.00
297_A330_Y0.5921.00
87_N264_E0.5911.00
326_S432_G0.5901.00
304_V438_L0.5891.00
538_D547_R0.5881.00
427_Q430_T0.5881.00
180_S216_G0.5871.00
313_Y365_Q0.5851.00
124_E252_V0.5841.00
556_A608_I0.5831.00
189_E223_D0.5821.00
166_P490_Y0.5821.00
130_A255_H0.5821.00
138_G165_A0.5821.00
154_P333_L0.5801.00
414_I419_C0.5791.00
572_D641_N0.5791.00
85_S161_A0.5791.00
137_V189_E0.5781.00
140_D270_M0.5781.00
281_G549_G0.5771.00
296_W434_M0.5771.00
90_D260_V0.5761.00
406_A409_W0.5751.00
583_Y618_V0.5741.00
268_T487_Q0.5741.00
601_V613_R0.5731.00
435_V449_A0.5721.00
116_Y120_Q0.5711.00
298_A301_S0.5691.00
229_R232_A0.5691.00
174_F179_L0.5681.00
314_F354_L0.5681.00
564_A588_D0.5681.00
127_E130_A0.5641.00
316_S368_T0.5641.00
616_A619_F0.5631.00
355_W389_L0.5631.00
147_M193_T0.5631.00
128_F131_G0.5621.00
146_Y170_V0.5621.00
343_E353_R0.5611.00
407_W421_I0.5611.00
168_S275_Y0.5591.00
375_S575_L0.5591.00
126_N133_R0.5591.00
257_G261_S0.5581.00
565_E623_L0.5581.00
131_G225_V0.5581.00
90_D125_V0.5571.00
411_Y420_P0.5571.00
104_W343_E0.5561.00
299_W304_V0.5561.00
618_V639_I0.5551.00
457_D516_V0.5541.00
355_W380_G0.5531.00
132_L165_A0.5531.00
638_D642_D0.5491.00
353_R357_L0.5491.00
395_L419_C0.5491.00
174_F611_I0.5491.00
488_T493_D0.5491.00
307_I331_G0.5481.00
198_Y226_V0.5481.00
282_Q492_N0.5481.00
380_G384_P0.5481.00
542_N549_G0.5471.00
86_A162_R0.5461.00
321_W546_H0.5451.00
127_E257_G0.5451.00
286_V428_T0.5451.00
354_L358_V0.5451.00
500_Y512_S0.5431.00
96_R336_G0.5431.00
434_M456_V0.5431.00
85_S293_Y0.5411.00
273_L287_T0.5401.00
192_V225_V0.5401.00
186_A273_L0.5391.00
370_P406_A0.5391.00
168_S182_R0.5391.00
573_H576_K0.5391.00
313_Y337_T0.5381.00
150_V194_C0.5371.00
105_V360_S0.5371.00
586_T591_D0.5371.00
563_V566_A0.5361.00
296_W398_V0.5351.00
118_Y333_L0.5351.00
398_V424_T0.5341.00
126_N259_S0.5341.00
84_A265_R0.5331.00
377_M406_A0.5321.00
513_A518_F0.5311.00
140_D165_A0.5311.00
540_V547_R0.5301.00
397_T421_I0.5301.00
323_T327_Y0.5281.00
375_S378_K0.5271.00
119_A122_H0.5271.00
102_I121_L0.5261.00
357_L360_S0.5251.00
560_V563_V0.5251.00
145_L157_M0.5241.00
323_T433_M0.5241.00
323_T424_T0.5231.00
562_G603_S0.5231.00
299_W453_L0.5231.00
304_V454_P0.5221.00
157_M330_Y0.5221.00
125_V129_A0.5211.00
174_F627_R0.5201.00
561_P603_S0.5201.00
103_E113_N0.5191.00
381_V386_A0.5191.00
124_E151_P0.5191.00
185_A285_G0.5181.00
323_T396_G0.5171.00
135_M225_V0.5151.00
125_V158_L0.5151.00
157_M161_A0.5131.00
315_C324_G0.5131.00
148_P197_Y0.5121.00
500_Y517_Y0.5121.00
296_W299_W0.5121.00
408_T411_Y0.5111.00
145_L160_C0.5111.00
449_A523_A0.5101.00
226_V229_R0.5101.00
125_V128_F0.5101.00
618_V643_A0.5101.00
295_S299_W0.5091.00
370_P400_E0.5091.00
150_V227_V0.5081.00
127_E255_H0.5081.00
539_D550_T0.5071.00
550_T570_G0.5061.00
186_A285_G0.5051.00
557_I568_V0.5051.00
437_G440_G0.5041.00
557_I604_V0.5041.00
364_T391_S0.5031.00
543_V615_E0.5031.00
300_T331_G0.5021.00
624_P636_L0.5021.00
258_A261_S0.5011.00
132_L136_G0.5001.00
84_A294_L0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2vsqA 1 0.9025 100 0.152 Contact Map
1pg4A 1 0.946 100 0.215 Contact Map
1ry2A 1 0.901 100 0.229 Contact Map
1amuA 1 0.7541 100 0.233 Contact Map
4wd1A 1 0.9325 100 0.236 Contact Map
3tsyA 2 0.6717 100 0.242 Contact Map
4d4iA 1 0.7106 100 0.248 Contact Map
3etcA 2 0.7946 100 0.251 Contact Map
4dg8A 1 0.7376 100 0.256 Contact Map
4iz6A 2 0.8291 100 0.257 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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