Q9HQQ6 - HALSA - GREMLIN Contacts

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Q9HQQ6 - Glycosyl transferase-like

UniProt:	Q9HQQ6	Sequences: MSEEYEEVCALVPTRNEAATIADVIDGLFEVGVGHVLVVDGNSADDTAAVAAEHGAEVVQQSGDGKGQAVREGVSLIEAAYVLLLDGDGTNPPAQASRLLDPLVAGEAEHVVGDRTADMRPGAMSTLNQIGNRLINRAFHRIHGEDYGDILSGYRAFTAESFDRMFLSAEGFGIETEMAVECSRHNITTRVVPTTYRARPDDSETNLHPISDGARIILTLYSLAKTSNPLFYFGSIGAGFGTLGVALAGYVAYDWLLHGVSHEVIALVAGVSVLFGVQLLMFGLLSDLIVTLHREQTRRIERLNK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	305 (261)
Sequences:	22235 (18095)
Seq/√Len:	1120.0

ECOLI - ARNC GTRB YAIP PGAC YIBD WCAA WCAE WBBL BCSA
BACSU - YKOT YKCC CSBB YDAM TUAG GGAA EPSH EPSJ GGAB CGED EPSE SPSA YWDF YFNE
HALSA - Q9HQQ6 Q9HSB1 Q9HQP8 Q9HR08 Q9HQP4 Q9HQP3 Q9HNK3 Q9HSC8
SULSO - Q97UK7 Q97TY0 Q97YM4 Q7LXY2 Q97W52 Q97WK7 Q97TZ0 Q7LXF7 Q97X05 Q97YG5 Q7LXG6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
18_A	46_D	3.867	1.00
159_A	163_D	3.831	1.00
40_D	60_Q	3.596	1.00
9_C	79_A	3.244	1.00
17_E	87_G	2.833	1.00
14_T	47_T	2.757	1.00
177_E	181_E	2.744	1.00
81_Y	103_L	2.736	1.00
46_D	49_A	2.665	1.00
39_V	73_G	2.642	1.00
48_A	60_Q	2.577	1.00
9_C	35_H	2.575	1.00
35_H	57_E	2.482	1.00
108_A	190_R	2.416	1.00
48_A	52_A	2.389	1.00
7_E	80_A	2.350	1.00
161_S	187_I	2.271	1.00
98_R	194_T	2.223	1.00
40_D	43_S	2.179	1.00
22_A	26_D	2.144	1.00
72_E	76_L	2.140	1.00
22_A	50_V	2.100	1.00
102_P	190_R	2.029	1.00
102_P	192_V	2.019	1.00
83_L	156_A	2.018	1.00
51_A	58_V	2.014	1.00
26_D	54_H	2.008	1.00
48_A	58_V	1.991	1.00
102_P	105_A	1.978	1.00
11_L	73_G	1.913	1.00
22_A	53_E	1.909	1.00
66_K	70_V	1.908	1.00
109_E	158_T	1.908	1.00
35_H	79_A	1.906	1.00
103_L	156_A	1.899	1.00
52_A	60_Q	1.885	1.00
7_E	33_V	1.866	1.00
109_E	187_I	1.835	1.00
38_V	51_A	1.815	1.00
99_L	156_A	1.815	1.00
16_N	44_A	1.793	1.00
8_V	100_L	1.785	1.00
25_I	54_H	1.774	1.00
81_Y	156_A	1.769	1.00
9_C	77_I	1.731	1.00
74_V	162_F	1.724	1.00
98_R	101_D	1.710	1.00
59_V	76_L	1.708	1.00
70_V	84_L	1.681	1.00
164_R	187_I	1.671	1.00
9_C	37_L	1.661	1.00
12_V	24_V	1.632	1.00
18_A	50_V	1.620	1.00
83_L	96_A	1.615	1.00
22_A	54_H	1.586	1.00
16_N	43_S	1.543	1.00
46_D	50_V	1.527	1.00
101_D	105_A	1.525	1.00
91_N	95_Q	1.519	1.00
94_A	98_R	1.515	1.00
7_E	78_E	1.509	1.00
50_V	53_E	1.502	1.00
164_R	185_H	1.502	1.00
70_V	86_D	1.496	1.00
23_D	90_T	1.488	1.00
8_V	96_A	1.462	1.00
15_R	63_G	1.459	1.00
72_E	75_S	1.458	1.00
110_H	189_T	1.455	1.00
12_V	36_V	1.449	1.00
49_A	53_E	1.435	1.00
102_P	106_G	1.435	1.00
7_E	79_A	1.408	1.00
160_E	164_R	1.391	1.00
26_D	30_E	1.380	1.00
27_G	91_N	1.371	1.00
83_L	95_Q	1.362	1.00
103_L	158_T	1.352	1.00
64_D	68_Q	1.352	1.00
35_H	78_E	1.348	1.00
39_V	69_A	1.336	1.00
50_V	54_H	1.333	1.00
161_S	182_C	1.330	1.00
82_V	159_A	1.330	1.00
14_T	87_G	1.327	1.00
57_E	76_L	1.310	1.00
23_D	26_D	1.303	1.00
128_N	131_G	1.297	1.00
41_G	63_G	1.288	1.00
17_E	20_T	1.278	1.00
40_D	48_A	1.272	1.00
85_L	91_N	1.265	1.00
107_E	188_T	1.256	1.00
81_Y	100_L	1.256	1.00
14_T	38_V	1.248	1.00
25_I	38_V	1.235	1.00
74_V	82_V	1.223	1.00
169_A	172_F	1.216	1.00
14_T	17_E	1.213	1.00
59_V	72_E	1.210	1.00
77_I	159_A	1.205	1.00
97_S	101_D	1.204	1.00
27_G	90_T	1.190	1.00
29_F	55_G	1.173	1.00
110_H	182_C	1.168	1.00
115_R	153_G	1.161	1.00
67_G	174_I	1.160	1.00
158_T	161_S	1.145	1.00
23_D	200_P	1.144	1.00
13_P	69_A	1.129	1.00
61_Q	64_D	1.129	1.00
177_E	180_V	1.115	1.00
66_K	86_D	1.114	1.00
30_E	93_P	1.105	1.00
25_I	29_F	1.088	1.00
37_L	57_E	1.084	1.00
49_A	52_A	1.083	1.00
75_S	166_F	1.064	1.00
103_L	111_V	1.047	1.00
10_A	28_L	1.046	1.00
116_T	195_T	1.043	1.00
113_G	154_Y	1.041	1.00
175_E	179_A	1.030	1.00
174_I	177_E	1.027	1.00
196_Y	199_R	1.022	1.00
27_G	94_A	1.011	1.00
160_E	163_D	1.005	1.00
80_A	158_T	1.004	1.00
100_L	104_V	1.004	1.00
203_S	206_N	0.991	1.00
12_V	87_G	0.989	1.00
66_K	174_I	0.983	1.00
10_A	96_A	0.981	1.00
74_V	84_L	0.977	1.00
11_L	39_V	0.973	1.00
31_V	97_S	0.973	1.00
66_K	152_S	0.966	1.00
212_D	216_I	0.966	1.00
219_T	222_S	0.957	1.00
10_A	83_L	0.954	1.00
34_G	55_G	0.946	1.00
126_T	129_Q	0.943	1.00
192_V	195_T	0.940	1.00
23_D	27_G	0.932	1.00
176_T	180_V	0.930	1.00
95_Q	99_L	0.916	1.00
124_M	127_L	0.913	1.00
102_P	111_V	0.907	1.00
209_P	212_D	0.907	1.00
71_R	75_S	0.907	1.00
101_D	104_V	0.899	1.00
132_N	135_I	0.881	1.00
99_L	113_G	0.876	1.00
114_D	193_P	0.873	1.00
95_Q	154_Y	0.871	1.00
137_R	141_R	0.864	1.00
25_I	36_V	0.860	1.00
82_V	162_F	0.855	1.00
20_T	200_P	0.855	1.00
99_L	103_L	0.850	1.00
80_A	160_E	0.849	1.00
29_F	54_H	0.847	1.00
139_F	143_H	0.844	1.00
106_G	190_R	0.840	1.00
74_V	77_I	0.840	1.00
94_A	97_S	0.839	1.00
24_V	27_G	0.839	1.00
57_E	78_E	0.832	1.00
24_V	28_L	0.832	1.00
41_G	65_G	0.831	1.00
70_V	174_I	0.830	1.00
254_D	258_H	0.829	1.00
237_G	241_G	0.823	1.00
205_T	208_H	0.820	1.00
81_Y	158_T	0.820	1.00
157_F	162_F	0.813	1.00
27_G	31_V	0.811	1.00
114_D	191_V	0.807	1.00
26_D	29_F	0.806	1.00
28_L	36_V	0.805	1.00
98_R	102_P	0.804	1.00
89_G	199_R	0.803	1.00
132_N	136_N	0.796	1.00
61_Q	72_E	0.788	1.00
90_T	118_D	0.786	1.00
124_M	131_G	0.785	1.00
212_D	215_R	0.785	1.00
36_V	56_A	0.784	1.00
260_V	263_E	0.778	1.00
215_R	219_T	0.775	1.00
9_C	159_A	0.774	1.00
173_G	176_T	0.774	1.00
12_V	28_L	0.774	1.00
150_I	155_R	0.773	1.00
140_H	143_H	0.769	1.00
241_G	244_G	0.759	1.00
216_I	220_L	0.759	1.00
7_E	35_H	0.759	1.00
182_C	187_I	0.756	1.00
67_G	71_R	0.756	1.00
21_I	87_G	0.755	1.00
37_L	77_I	0.752	1.00
79_A	159_A	0.751	1.00
135_I	139_F	0.750	1.00
21_I	50_V	0.748	1.00
14_T	21_I	0.748	1.00
34_G	96_A	0.742	1.00
18_A	45_D	0.740	1.00
28_L	85_L	0.739	1.00
209_P	213_G	0.739	1.00
161_S	165_M	0.736	1.00
9_C	78_E	0.736	1.00
165_M	182_C	0.735	1.00
68_Q	169_A	0.733	1.00
8_V	156_A	0.733	1.00
215_R	218_L	0.728	1.00
168_S	177_E	0.727	1.00
99_L	111_V	0.723	1.00
155_R	179_A	0.721	1.00
38_V	56_A	0.720	1.00
157_F	182_C	0.720	1.00
176_T	179_A	0.720	1.00
13_P	41_G	0.719	1.00
95_Q	98_R	0.716	1.00
27_G	30_E	0.716	1.00
253_Y	257_L	0.716	1.00
124_M	128_N	0.713	1.00
28_L	91_N	0.712	1.00
218_L	222_S	0.710	1.00
77_I	82_V	0.708	1.00
92_P	198_A	0.704	1.00
29_F	56_A	0.704	1.00
24_V	85_L	0.698	1.00
125_S	128_N	0.697	1.00
73_G	77_I	0.696	1.00
168_S	171_G	0.695	1.00
98_R	192_V	0.695	1.00
102_P	108_A	0.693	1.00
95_Q	113_G	0.692	1.00
242_T	246_A	0.691	1.00
43_S	47_T	0.690	1.00
15_R	41_G	0.688	1.00
48_A	51_A	0.686	1.00
83_L	99_L	0.685	1.00
25_I	56_A	0.684	1.00
152_S	155_R	0.683	1.00
27_G	197_R	0.683	1.00
106_G	188_T	0.683	1.00
141_R	145_E	0.680	1.00
13_P	70_V	0.679	1.00
179_A	183_S	0.679	1.00
100_L	156_A	0.679	1.00
61_Q	68_Q	0.675	1.00
37_L	76_L	0.675	1.00
172_F	175_E	0.673	1.00
263_E	266_A	0.672	1.00
179_A	182_C	0.672	1.00
217_I	220_L	0.672	1.00
91_N	196_Y	0.670	1.00
20_T	24_V	0.669	1.00
52_A	58_V	0.666	1.00
62_S	65_G	0.666	1.00
112_V	150_I	0.664	1.00
21_I	47_T	0.663	1.00
37_L	73_G	0.663	1.00
17_E	21_I	0.662	1.00
178_M	182_C	0.660	1.00
21_I	51_A	0.659	1.00
251_V	254_D	0.658	1.00
212_D	219_T	0.656	1.00
99_L	154_Y	0.655	1.00
267_L	270_G	0.655	1.00
18_A	22_A	0.653	1.00
157_F	178_M	0.648	1.00
238_A	241_G	0.647	1.00
92_P	95_Q	0.647	1.00
13_P	87_G	0.645	1.00
103_L	108_A	0.644	1.00
13_P	66_K	0.643	1.00
109_E	182_C	0.642	1.00
214_A	218_L	0.642	1.00
69_A	72_E	0.641	1.00
66_K	69_A	0.637	1.00
12_V	38_V	0.637	1.00
66_K	84_L	0.635	1.00
250_Y	254_D	0.633	1.00
134_L	137_R	0.633	1.00
109_E	188_T	0.629	1.00
127_L	131_G	0.628	1.00
14_T	51_A	0.625	1.00
158_T	187_I	0.623	1.00
44_A	47_T	0.622	1.00
31_V	96_A	0.617	1.00
83_L	91_N	0.615	1.00
41_G	69_A	0.613	1.00
12_V	85_L	0.612	1.00
68_Q	72_E	0.611	1.00
181_E	184_R	0.611	1.00
213_G	216_I	0.611	1.00
173_G	177_E	0.610	1.00
131_G	134_L	0.608	1.00
179_A	189_T	0.607	1.00
39_V	72_E	0.607	1.00
198_A	201_D	0.606	1.00
261_S	264_V	0.604	1.00
216_I	219_T	0.602	1.00
228_N	231_F	0.601	1.00
237_G	244_G	0.601	1.00
99_L	195_T	0.600	1.00
161_S	164_R	0.599	1.00
146_D	188_T	0.599	1.00
249_G	253_Y	0.598	1.00
109_E	161_S	0.596	1.00
199_R	203_S	0.596	1.00
126_T	131_G	0.596	1.00
175_E	178_M	0.593	1.00
210_I	213_G	0.591	1.00
11_L	77_I	0.590	1.00
41_G	64_D	0.587	1.00
126_T	130_I	0.585	1.00
260_V	265_I	0.584	1.00
32_G	104_V	0.582	1.00
17_E	66_K	0.582	1.00
18_A	49_A	0.579	1.00
33_V	55_G	0.578	1.00
175_E	180_V	0.578	1.00
139_F	142_I	0.578	1.00
35_H	77_I	0.576	1.00
7_E	34_G	0.576	1.00
15_R	44_A	0.570	1.00
51_A	56_A	0.567	1.00
7_E	104_V	0.567	1.00
36_V	55_G	0.567	1.00
133_R	136_N	0.566	1.00
245_V	248_A	0.564	1.00
81_Y	104_V	0.563	1.00
31_V	94_A	0.562	1.00
92_P	196_Y	0.562	1.00
80_A	159_A	0.560	1.00
137_R	140_H	0.560	1.00
138_A	142_I	0.559	1.00
24_V	89_G	0.558	1.00
64_D	72_E	0.557	1.00
222_S	226_T	0.556	1.00
268_V	271_V	0.556	1.00
266_A	270_G	0.555	1.00
162_F	178_M	0.554	1.00
16_N	47_T	0.552	1.00
213_G	217_I	0.552	1.00
11_L	82_V	0.548	1.00
219_T	223_L	0.547	1.00
232_Y	236_I	0.546	1.00
112_V	115_R	0.545	1.00
124_M	129_Q	0.544	1.00
150_I	179_A	0.542	1.00
21_I	26_D	0.541	1.00
267_L	271_V	0.538	1.00
233_F	237_G	0.538	1.00
111_V	192_V	0.535	1.00
137_R	142_I	0.532	1.00
17_E	86_D	0.530	1.00
32_G	97_S	0.530	1.00
42_N	61_Q	0.528	1.00
234_G	237_G	0.526	1.00
136_N	139_F	0.526	1.00
70_V	152_S	0.525	1.00
260_V	264_V	0.525	1.00
136_N	140_H	0.521	1.00
244_G	248_A	0.521	1.00
177_E	227_S	0.519	1.00
241_G	245_V	0.518	1.00
109_E	160_E	0.518	1.00
210_I	214_A	0.517	1.00
220_L	224_A	0.517	1.00
261_S	265_I	0.515	1.00
84_L	167_L	0.515	1.00
237_G	240_F	0.515	1.00
196_Y	200_P	0.513	1.00
91_N	154_Y	0.512	1.00
15_R	42_N	0.511	1.00
42_N	63_G	0.509	1.00
190_R	193_P	0.508	1.00
213_G	220_L	0.507	1.00
134_L	138_A	0.505	1.00
154_Y	197_R	0.505	1.00
209_P	216_I	0.504	1.00
246_A	250_Y	0.504	1.00
96_A	156_A	0.503	1.00
127_L	130_I	0.502	1.00
173_G	219_T	0.501	1.00
235_S	239_G	0.501	1.00
255_W	265_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4p02A	1	0.9967	100	0.361	Contact Map
3bcvA	2	0.5607	100	0.408	Contact Map
2z86A	2	0.7967	100	0.429	Contact Map
4fixA	3	0.9738	100	0.432	Contact Map
1qg8A	1	0.6951	100	0.437	Contact Map
2d7iA	1	0.9639	100	0.444	Contact Map
3l7iA	4	0.0492	100	0.444	Contact Map
5ajoA	1	0.9574	100	0.446	Contact Map
1xhbA	1	0.9541	100	0.453	Contact Map
3ckjA	2	0.8295	100	0.472	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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