Q9HQN1 - HALSA - GREMLIN Contacts

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Q9HQN1 - Sulfite oxidase homolog

UniProt:	Q9HQN1	Sequences: MTVEDVTDLYQAFGDDRIPPGQRETTKFPVLSKGDTPNWDRDTWTFTVTGAVDTELSLSYDEFRALDTVTQRQDFHCVTGWSKLDCEFTGVPFPELAAAAGVTDDAVHVLFHALDGYTTNLPLADCMREEVLFTWAFDDDPLPPEHGGPLRVVTPHKYAYKGAKWVDGVEFLTEPQRGYWEKRGYSNTADPWAEDRYS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	198 (176)
Sequences:	4208 (2423)
Seq/√Len:	182.6

ECOLI - YEDY
BACSU - YUIH
HALSA - Q9HQN1
SULSO - Q97U24 Q97V11

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
68_T	135_W	3.730	1.00
59_S	62_E	3.351	1.00
53_D	101_G	3.217	1.00
92_P	95_E	3.203	1.00
70_T	89_T	3.135	1.00
49_T	170_E	3.106	1.00
49_T	168_G	2.947	1.00
53_D	103_T	2.899	1.00
111_F	169_V	2.642	1.00
66_L	99_A	2.623	1.00
112_H	168_G	2.574	1.00
89_T	136_A	2.526	1.00
45_T	57_S	2.451	1.00
47_T	57_S	2.280	1.00
97_A	171_F	2.128	1.00
133_F	150_L	2.124	1.00
98_A	127_M	2.118	1.00
56_L	100_A	2.095	1.00
75_F	159_A	2.064	1.00
110_L	172_L	2.059	1.00
95_E	98_A	2.015	1.00
70_T	87_E	1.992	1.00
40_D	43_T	1.978	1.00
51_A	173_T	1.960	1.00
86_C	137_F	1.950	1.00
87_E	139_D	1.901	1.00
96_L	133_F	1.859	1.00
121_L	154_T	1.850	1.00
109_V	171_F	1.818	1.00
72_R	87_E	1.809	1.00
68_T	89_T	1.798	1.00
134_T	153_V	1.778	1.00
94_P	98_A	1.758	1.00
51_A	103_T	1.737	1.00
114_L	167_D	1.646	1.00
69_V	92_P	1.632	1.00
54_T	101_G	1.601	1.00
112_H	170_E	1.583	1.00
110_L	170_E	1.550	1.00
91_V	96_L	1.532	1.00
133_F	166_V	1.530	1.00
105_D	173_T	1.518	1.00
111_F	166_V	1.518	1.00
64_R	135_W	1.504	1.00
47_T	168_G	1.492	1.00
28_F	86_C	1.459	1.00
106_A	171_F	1.454	1.00
52_V	55_E	1.449	1.00
74_D	85_D	1.442	1.00
93_F	126_C	1.441	1.00
60_Y	64_R	1.432	1.00
56_L	99_A	1.389	1.00
42_D	61_D	1.369	1.00
68_T	136_A	1.359	1.00
65_A	99_A	1.343	1.00
58_L	99_A	1.333	1.00
111_F	152_V	1.331	1.00
131_V	154_T	1.312	1.00
136_A	141_P	1.277	1.00
62_E	65_A	1.267	1.00
109_V	126_C	1.252	1.00
75_F	162_G	1.242	1.00
51_A	105_D	1.201	1.00
22_Q	137_F	1.177	1.00
177_R	182_K	1.152	1.00
178_G	181_E	1.132	1.00
22_Q	72_R	1.116	1.00
44_W	60_Y	1.109	1.00
66_L	91_V	1.104	1.00
93_F	169_V	1.093	1.00
89_T	135_W	1.063	1.00
63_F	150_L	1.058	1.00
67_D	95_E	1.057	1.00
177_R	181_E	1.046	1.00
113_A	163_A	1.013	0.99
123_L	171_F	1.012	0.99
71_Q	132_L	1.010	0.99
154_T	162_G	1.004	0.99
33_K	36_T	1.003	0.99
48_V	52_V	1.002	0.99
125_D	157_K	0.997	0.99
41_R	60_Y	0.981	0.99
33_K	37_P	0.981	0.99
28_F	137_F	0.970	0.99
128_R	131_V	0.970	0.99
107_V	173_T	0.969	0.99
51_A	106_A	0.969	0.99
119_T	160_Y	0.964	0.99
34_G	37_P	0.959	0.99
87_E	138_D	0.958	0.99
32_S	36_T	0.952	0.99
61_D	64_R	0.948	0.99
119_T	163_A	0.947	0.99
25_T	143_P	0.932	0.99
52_V	171_F	0.929	0.99
64_R	136_A	0.928	0.99
38_N	144_P	0.925	0.99
50_G	55_E	0.923	0.99
75_F	86_C	0.919	0.99
125_D	156_H	0.909	0.99
102_V	171_F	0.906	0.99
97_A	102_V	0.905	0.99
46_F	150_L	0.901	0.99
44_W	150_L	0.899	0.99
67_D	92_P	0.890	0.99
69_V	95_E	0.879	0.98
119_T	161_K	0.866	0.98
91_V	135_W	0.865	0.98
125_D	188_T	0.857	0.98
122_P	125_D	0.854	0.98
28_F	84_L	0.850	0.98
86_C	138_D	0.850	0.98
137_F	146_H	0.844	0.98
152_V	163_A	0.839	0.98
93_F	152_V	0.822	0.98
58_L	100_A	0.817	0.98
170_E	176_Q	0.816	0.98
66_L	95_E	0.812	0.97
48_V	56_L	0.800	0.97
137_F	143_P	0.799	0.97
109_V	169_V	0.794	0.97
18_I	22_Q	0.786	0.97
42_D	60_Y	0.781	0.97
78_V	160_Y	0.779	0.97
52_V	100_A	0.773	0.97
18_I	84_L	0.772	0.97
69_V	132_L	0.769	0.97
110_L	181_E	0.767	0.96
25_T	86_C	0.766	0.96
76_H	83_K	0.766	0.96
153_V	162_G	0.765	0.96
135_W	141_P	0.763	0.96
102_V	123_L	0.761	0.96
125_D	129_E	0.755	0.96
49_T	55_E	0.755	0.96
61_D	65_A	0.751	0.96
39_W	114_L	0.751	0.96
143_P	146_H	0.746	0.96
135_W	150_L	0.740	0.96
91_V	133_F	0.729	0.95
133_F	152_V	0.726	0.95
180_W	189_A	0.726	0.95
95_E	99_A	0.724	0.95
179_Y	183_R	0.724	0.95
91_V	95_E	0.721	0.95
24_E	27_K	0.719	0.95
68_T	91_V	0.718	0.95
52_V	106_A	0.715	0.95
32_S	165_W	0.713	0.95
36_T	145_E	0.705	0.94
58_L	62_E	0.703	0.94
47_T	55_E	0.697	0.94
92_P	132_L	0.695	0.94
119_T	181_E	0.695	0.94
19_P	22_Q	0.685	0.93
126_C	131_V	0.685	0.93
152_V	166_V	0.676	0.93
94_P	129_E	0.672	0.93
41_R	148_G	0.667	0.93
39_W	46_F	0.666	0.92
110_L	176_Q	0.664	0.92
108_H	176_Q	0.664	0.92
112_H	118_T	0.661	0.92
134_T	152_V	0.661	0.92
117_Y	160_Y	0.660	0.92
25_T	140_D	0.658	0.92
28_F	165_W	0.656	0.92
129_E	132_L	0.653	0.92
63_F	91_V	0.649	0.92
76_H	119_T	0.643	0.91
75_F	153_V	0.642	0.91
79_T	82_S	0.637	0.91
56_L	62_E	0.635	0.91
132_L	153_V	0.634	0.91
80_G	192_W	0.632	0.90
134_T	150_L	0.628	0.90
160_Y	181_E	0.627	0.90
36_T	144_P	0.626	0.90
97_A	127_M	0.624	0.90
78_V	158_Y	0.624	0.90
50_G	106_A	0.623	0.90
31_L	81_W	0.619	0.90
108_H	120_N	0.619	0.90
86_C	153_V	0.618	0.89
94_P	128_R	0.618	0.89
30_V	145_E	0.615	0.89
83_K	86_C	0.611	0.89
118_T	182_K	0.611	0.89
79_T	160_Y	0.610	0.89
89_T	92_P	0.609	0.89
48_V	58_L	0.609	0.89
93_F	97_A	0.605	0.88
52_V	56_L	0.605	0.88
111_F	117_Y	0.603	0.88
49_T	112_H	0.602	0.88
110_L	118_T	0.600	0.88
110_L	177_R	0.598	0.88
63_F	135_W	0.595	0.88
64_R	141_P	0.593	0.87
125_D	131_V	0.589	0.87
25_T	137_F	0.588	0.87
172_L	176_Q	0.585	0.87
152_V	169_V	0.585	0.87
53_D	105_D	0.584	0.87
97_A	100_A	0.582	0.86
45_T	59_S	0.574	0.86
91_V	150_L	0.574	0.86
46_F	58_L	0.573	0.86
21_G	72_R	0.570	0.85
107_V	123_L	0.570	0.85
99_A	102_V	0.570	0.85
31_L	79_T	0.567	0.85
55_E	58_L	0.565	0.85
37_P	115_D	0.565	0.85
56_L	101_G	0.564	0.85
19_P	140_D	0.561	0.84
108_H	175_P	0.560	0.84
38_N	41_R	0.559	0.84
183_R	186_S	0.554	0.84
76_H	79_T	0.553	0.84
130_E	156_H	0.553	0.84
93_F	131_V	0.551	0.83
93_F	171_F	0.544	0.83
158_Y	161_K	0.542	0.82
117_Y	161_K	0.541	0.82
93_F	154_T	0.539	0.82
178_G	182_K	0.538	0.82
175_P	181_E	0.537	0.82
53_D	56_L	0.536	0.82
179_Y	182_K	0.536	0.82
157_K	161_K	0.536	0.82
51_A	172_L	0.535	0.82
29_P	75_F	0.535	0.82
46_F	168_G	0.533	0.81
67_D	91_V	0.533	0.81
17_R	85_D	0.532	0.81
49_T	52_V	0.531	0.81
54_T	174_E	0.531	0.81
17_R	20_P	0.530	0.81
29_P	83_K	0.529	0.81
78_V	81_W	0.529	0.81
179_Y	184_G	0.528	0.81
96_L	150_L	0.524	0.80
79_T	157_K	0.524	0.80
78_V	161_K	0.522	0.80
88_F	154_T	0.521	0.80
180_W	184_G	0.521	0.80
28_F	180_W	0.519	0.80
51_A	55_E	0.518	0.79
28_F	88_F	0.517	0.79
74_D	79_T	0.515	0.79
110_L	120_N	0.515	0.79
128_R	156_H	0.515	0.79
32_S	113_A	0.514	0.79
72_R	84_L	0.511	0.79
39_W	44_W	0.510	0.78
93_F	96_L	0.510	0.78
50_G	53_D	0.507	0.78
121_L	161_K	0.506	0.78
75_F	78_V	0.505	0.78
120_N	181_E	0.504	0.78
161_K	180_W	0.504	0.78
181_E	184_G	0.500	0.77
105_D	174_E	0.500	0.77

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2a9dA	2	1	100	0.152	Contact Map
1ogpA	4	1	100	0.155	Contact Map
1soxA	2	1	100	0.156	Contact Map
2blfA	1	1	100	0.173	Contact Map
2bihA	2	1	100	0.173	Contact Map
2biiA	2	0.9646	100	0.184	Contact Map
4pw3A	2	0.9798	100	0.199	Contact Map
2xtsA	2	0.9899	100	0.202	Contact Map
1xdyA	3	0.9899	100	0.205	Contact Map
2nptA	1	0.4646	30.7	0.95	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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