GREMLIN Database
RS11 - 30S ribosomal protein S11
UniProt: Q9HQJ5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 127 (113)
Sequences: 1497 (605)
Seq/√Len: 56.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
22_T31_T3.7421.00
9_I75_R3.6451.00
8_G69_I3.5621.00
25_D29_A3.4971.00
72_V103_L3.2181.00
35_S59_Q2.9941.00
60_L64_V2.7181.00
73_H106_G2.5961.00
10_A23_V2.5501.00
73_H107_R2.5351.00
59_Q63_E2.3681.00
61_A101_A2.3431.00
35_S39_S2.2171.00
71_K104_E2.1821.00
10_A72_V2.1631.00
7_W71_K2.0601.00
32_L67_Q2.0151.00
32_L69_I1.9411.00
5_T32_L1.8190.99
74_V98_L1.6610.99
23_V60_L1.6350.99
65_L70_E1.6070.99
98_L103_L1.6000.99
19_T48_A1.5920.98
21_M60_L1.4910.98
62_E65_L1.4700.97
4_D67_Q1.4270.97
75_R111_V1.3640.96
12_V94_A1.3530.96
33_A60_L1.3370.95
23_V64_V1.3310.95
10_A98_L1.3300.95
16_F79_P1.3070.95
57_A61_A1.3020.95
39_S59_Q1.2880.94
71_K106_G1.2590.94
5_T67_Q1.2050.92
35_S40_V1.1980.92
11_H111_V1.1560.90
62_E66_D1.1480.90
11_H24_T1.1040.88
6_K31_T1.0950.88
39_S63_E1.0890.88
20_I36_S1.0760.87
40_V59_Q1.0700.87
17_N47_E1.0610.86
45_R48_A1.0440.85
13_H20_I1.0220.84
99_A105_I1.0120.84
75_R107_R0.9740.81
115_P118_G0.9710.81
7_W26_Q0.9680.81
76_V95_I0.9400.79
53_A90_G0.9390.79
50_P89_P0.9370.79
61_A72_V0.9280.78
26_Q31_T0.9240.78
6_K26_Q0.9160.77
42_K46_D0.9150.77
64_V67_Q0.9150.77
40_V55_Q0.9130.77
23_V98_L0.8950.75
95_I104_E0.8850.74
4_D69_I0.8830.74
13_H89_P0.8470.71
90_G112_T0.8390.70
15_S89_P0.8380.70
12_V95_I0.8330.70
42_K125_S0.8180.68
25_D100_R0.7830.65
62_E75_R0.7740.64
91_A110_D0.7730.64
16_F48_A0.7730.64
23_V103_L0.7650.63
37_G40_V0.7590.63
9_I26_Q0.7570.62
6_K69_I0.7520.62
76_V94_A0.7500.62
13_H122_P0.7440.61
63_E67_Q0.7390.61
51_Y55_Q0.7360.60
75_R109_E0.7300.60
46_D116_H0.7230.59
92_Q108_I0.7200.59
14_A90_G0.7160.58
20_I119_T0.7120.58
28_G38_G0.7090.57
61_A103_L0.7050.57
14_A95_I0.7040.57
18_N118_G0.7040.57
117_D123_K0.7030.57
55_Q58_E0.7010.57
41_V46_D0.6900.55
13_H109_E0.6830.55
12_V111_V0.6820.54
17_N125_S0.6820.54
14_A55_Q0.6810.54
118_G123_K0.6800.54
41_V78_G0.6770.54
89_P99_A0.6760.54
16_F58_E0.6750.54
116_H119_T0.6640.53
42_K54_M0.6630.52
40_V56_M0.6580.52
12_V17_N0.6520.51
34_K39_S0.6490.51
43_Q58_E0.6470.51
13_H125_S0.6450.50
12_V55_Q0.6440.50
97_A125_S0.6430.50
5_T25_D0.6400.50
10_A15_S0.6390.50
76_V79_P0.6370.50
118_G121_P0.6360.49
19_T53_A0.6340.49
40_V51_Y0.6300.49
47_E107_R0.6290.49
14_A50_P0.6290.49
37_G52_A0.6290.49
7_W27_T0.6280.49
61_A98_L0.6260.48
69_I94_A0.6200.48
47_E76_V0.6190.48
67_Q93_A0.6160.47
92_Q96_R0.6130.47
71_K93_A0.6050.46
11_H75_R0.6040.46
34_K37_G0.5970.45
42_K112_T0.5920.45
38_G116_H0.5890.44
20_I57_A0.5880.44
72_V98_L0.5860.44
22_T106_G0.5810.43
48_A56_M0.5800.43
54_M91_A0.5790.43
14_A96_R0.5640.42
51_Y58_E0.5630.42
39_S77_R0.5630.42
33_A66_D0.5600.41
33_A56_M0.5600.41
13_H22_T0.5590.41
41_V47_E0.5590.41
44_N78_G0.5580.41
72_V105_I0.5560.41
46_D123_K0.5560.41
105_I108_I0.5530.40
37_G44_N0.5530.40
7_W104_E0.5530.40
69_I72_V0.5530.40
61_A65_L0.5500.40
37_G56_M0.5490.40
120_R125_S0.5430.39
26_Q73_H0.5400.39
57_A101_A0.5390.39
15_S66_D0.5350.39
22_T28_G0.5350.39
105_I109_E0.5340.39
39_S93_A0.5340.39
4_D64_V0.5250.38
36_S40_V0.5240.37
60_L72_V0.5230.37
60_L67_Q0.5210.37
12_V47_E0.5210.37
24_T28_G0.5190.37
8_G44_N0.5180.37
100_R122_P0.5170.37
58_E93_A0.5160.37
79_P109_E0.5130.36
77_R111_V0.5090.36
48_A89_P0.5000.35
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4cvnE 1 0.9685 100 0.117 Contact Map
3zeyH 1 0.9134 100 0.147 Contact Map
4ujpP 1 0.9606 100 0.148 Contact Map
3j7aP 1 0.9685 100 0.149 Contact Map
4tp8K 1 0.0157 100 0.161 Contact Map
4rb5K 1 0.8976 100 0.162 Contact Map
3bbnK 1 0.9291 100 0.163 Contact Map
5aj3K 1 0.9291 100 0.164 Contact Map
1ovyA 1 0.7559 96.1 0.873 Contact Map
4tp9O 1 0.0157 95.9 0.875 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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