RNJ - HALSA - GREMLIN Contacts

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RNJ - Ribonuclease J

UniProt:	Q9HQI4	Sequences: MEIEIATIGGYEEVGRQMTAVRAGDDIVIFDMGLNLSKVLVHDNVETEKMHSLDLIDMGAIPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPIVGSPFTIELVKGEIESEQKFGVENDLVKMEAGGTMEIGDRCELEFVHVTHSIIDAINPVLHTPEGAVVYGLDKRMDHDPVLEDPIDMERFREIGREGEGVLCYIEDCTNAGKKGRTPSESTARRHLKDVLTSVADYDGGIVATTFSSHISRVSSLVEFAKEIGREPILLGRSMERYSGTAERMGRVNFPDDLGMFGHRKSVDRAFKRVMNEGKENFLPIVTGHQGEPQAMLTRMGRGETPYDIEDGDKIIFSASVIPEPTNKGQRYQSEQLLRMQGARIYDDIHVSGHLREEGHYQMLDALQPQHLIPAHQDMKGMAPYAKLAKSQGYKIGRDLHMTENGNTIQLVE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	448 (392)
Sequences:	5663 (3683)
Seq/√Len:	186.0

BACSU - RNJ2 RNJ1
HALSA - RNJ Q9HS54 Q9HMJ7
SULSO - Q7LYL5 Q980D0 Q980T9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
77_I	90_I	4.225	1.00
26_D	75_K	3.764	1.00
78_V	159_P	3.607	1.00
162_H	167_A	3.579	1.00
30_F	80_T	3.293	1.00
135_T	143_E	3.276	1.00
79_P	111_V	3.097	1.00
104_S	157_I	3.039	1.00
103_G	108_I	3.022	1.00
4_E	22_R	3.013	1.00
421_A	425_K	2.816	1.00
160_V	167_A	2.741	1.00
143_E	162_H	2.716	1.00
203_C	408_I	2.646	1.00
137_E	143_E	2.626	1.00
78_V	144_L	2.604	1.00
22_R	27_I	2.598	1.00
229_D	233_S	2.523	1.00
400_D	427_Q	2.490	1.00
392_E	423_L	2.449	1.00
68_S	96_R	2.391	1.00
6_A	443_T	2.314	1.00
135_T	145_E	2.300	1.00
19_T	410_A	2.257	1.00
144_L	161_L	2.228	1.00
231_L	241_I	2.217	1.00
100_P	128_V	2.143	1.00
28_V	76_A	2.129	1.00
21_V	30_F	2.075	1.00
5_I	205_I	2.037	1.00
131_E	134_G	2.013	1.00
233_S	379_R	2.009	1.00
27_I	73_D	2.002	1.00
237_Y	379_R	1.986	1.00
109_E	284_M	1.929	1.00
206_E	409_P	1.929	1.00
349_K	381_Y	1.920	1.00
30_F	170_Y	1.919	1.00
102_V	130_M	1.916	1.00
408_I	444_I	1.912	1.00
145_E	162_H	1.907	1.00
70_L	73_D	1.898	1.00
77_I	93_L	1.892	1.00
146_F	159_P	1.877	1.00
417_M	437_M	1.874	1.00
132_A	157_I	1.857	1.00
425_K	431_I	1.848	1.00
228_K	262_E	1.826	1.00
144_L	159_P	1.810	1.00
130_M	146_F	1.802	1.00
169_V	201_V	1.795	1.00
109_E	283_R	1.790	1.00
438_T	444_I	1.770	1.00
314_K	345_E	1.768	1.00
162_H	197_E	1.760	1.00
193_E	196_R	1.744	1.00
108_I	127_L	1.714	1.00
21_V	161_L	1.695	1.00
202_L	405_Q	1.688	1.00
105_P	131_E	1.669	1.00
77_I	99_A	1.664	1.00
5_I	203_C	1.650	1.00
208_C	420_Y	1.650	1.00
312_E	317_F	1.627	1.00
158_N	169_V	1.625	1.00
192_R	195_G	1.615	1.00
317_F	320_I	1.609	1.00
422_K	425_K	1.609	1.00
130_M	136_M	1.605	1.00
112_K	116_E	1.590	1.00
108_I	129_K	1.589	1.00
214_K	392_E	1.585	1.00
214_K	393_E	1.577	1.00
204_Y	402_L	1.575	1.00
111_V	127_L	1.565	1.00
345_E	348_D	1.554	1.00
28_V	142_C	1.538	1.00
5_I	21_V	1.537	1.00
205_I	410_A	1.522	1.00
103_G	111_V	1.521	1.00
147_V	158_N	1.521	1.00
312_E	316_N	1.519	1.00
230_V	351_I	1.508	1.00
343_D	374_R	1.502	1.00
76_A	102_V	1.493	1.00
145_E	160_V	1.468	1.00
3_I	168_V	1.463	1.00
27_I	74_V	1.462	1.00
241_I	351_I	1.462	1.00
20_A	27_I	1.461	1.00
160_V	169_V	1.457	1.00
6_A	22_R	1.451	1.00
421_A	435_L	1.450	1.00
406_H	436_H	1.441	1.00
260_A	318_L	1.425	1.00
419_P	422_K	1.420	1.00
306_F	310_M	1.417	1.00
80_T	170_Y	1.415	1.00
268_I	309_V	1.414	1.00
289_F	292_D	1.412	1.00
26_D	140_D	1.392	1.00
399_L	424_A	1.386	1.00
321_V	326_G	1.377	1.00
4_E	443_T	1.374	1.00
407_L	424_A	1.369	1.00
204_Y	399_L	1.354	1.00
409_P	417_M	1.353	1.00
269_L	278_S	1.346	1.00
29_I	74_V	1.346	1.00
18_M	29_I	1.331	1.00
250_I	277_Y	1.319	1.00
26_D	139_G	1.319	1.00
260_A	267_P	1.313	1.00
87_I	111_V	1.307	1.00
79_P	103_G	1.301	1.00
208_C	412_Q	1.298	1.00
407_L	420_Y	1.297	1.00
105_P	129_K	1.290	1.00
344_I	378_A	1.288	1.00
436_H	444_I	1.283	1.00
169_V	204_Y	1.281	1.00
243_A	256_L	1.275	1.00
308_R	311_N	1.273	1.00
206_E	420_Y	1.269	1.00
242_V	335_M	1.269	1.00
64_D	93_L	1.269	1.00
315_E	320_I	1.267	1.00
228_K	263_I	1.262	1.00
289_F	293_L	1.261	1.00
76_A	138_I	1.260	1.00
306_F	309_V	1.256	1.00
153_I	388_G	1.253	1.00
231_L	260_A	1.244	1.00
78_V	161_L	1.243	1.00
342_Y	348_D	1.237	1.00
86_H	411_H	1.235	1.00
8_I	20_A	1.234	1.00
104_S	146_F	1.231	1.00
169_V	402_L	1.226	1.00
147_V	160_V	1.221	1.00
279_G	283_R	1.220	1.00
322_T	327_E	1.220	1.00
29_I	67_M	1.218	1.00
239_G	349_K	1.207	1.00
439_E	442_N	1.206	1.00
78_V	146_F	1.204	1.00
206_E	399_L	1.194	1.00
352_F	365_Q	1.188	1.00
226_H	229_D	1.181	1.00
30_F	159_P	1.178	1.00
177_D	397_Q	1.178	1.00
225_R	229_D	1.177	1.00
237_Y	349_K	1.175	1.00
356_V	362_N	1.175	1.00
20_A	29_I	1.170	1.00
84_L	114_E	1.160	1.00
424_A	428_G	1.150	1.00
357_I	360_P	1.145	1.00
191_F	194_I	1.136	1.00
76_A	100_P	1.134	1.00
305_A	308_R	1.131	1.00
196_R	403_Q	1.130	1.00
399_L	407_L	1.122	1.00
206_E	407_L	1.121	1.00
79_P	107_T	1.114	1.00
174_K	206_E	1.112	1.00
51_H	54_D	1.111	1.00
423_L	427_Q	1.107	1.00
358_P	363_K	1.107	1.00
366_R	382_D	1.101	1.00
23_A	142_C	1.100	1.00
228_K	232_T	1.096	1.00
92_K	96_R	1.096	1.00
289_F	294_G	1.092	1.00
191_F	195_G	1.091	1.00
171_G	206_E	1.089	1.00
79_P	90_I	1.087	1.00
392_E	419_P	1.085	1.00
50_M	54_D	1.082	1.00
344_I	374_R	1.076	1.00
113_G	280_T	1.075	1.00
12_E	414_M	1.072	1.00
320_I	326_G	1.069	1.00
86_H	173_D	1.067	1.00
253_V	269_L	1.065	1.00
416_G	420_Y	1.064	1.00
224_R	262_E	1.063	1.00
390_L	394_G	1.060	1.00
132_A	148_H	1.059	1.00
212_G	415_K	1.057	1.00
396_Y	423_L	1.056	1.00
217_T	391_R	1.050	1.00
292_D	295_M	1.046	1.00
83_H	389_H	1.042	1.00
163_T	166_G	1.039	1.00
94_A	101_I	1.039	1.00
28_V	75_K	1.034	1.00
22_R	73_D	1.031	1.00
340_T	372_L	1.030	1.00
5_I	19_T	1.029	1.00
28_V	78_V	1.028	1.00
133_G	147_V	1.024	1.00
30_F	205_I	1.024	1.00
418_A	421_A	1.022	1.00
104_S	107_T	1.021	1.00
78_V	138_I	1.021	1.00
132_A	156_A	1.021	1.00
422_K	426_S	1.014	1.00
81_H	151_H	1.008	0.99
256_L	318_L	1.006	0.99
330_A	352_F	1.004	0.99
230_V	381_Y	1.002	0.99
106_F	287_V	0.998	0.99
414_M	418_A	0.995	0.99
23_A	164_P	0.995	0.99
313_G	316_N	0.980	0.99
393_E	396_Y	0.979	0.99
27_I	75_K	0.979	0.99
330_A	333_T	0.976	0.99
81_H	86_H	0.976	0.99
156_A	172_L	0.969	0.99
83_H	151_H	0.969	0.99
82_G	153_I	0.967	0.99
4_E	445_Q	0.962	0.99
160_V	194_I	0.961	0.99
149_V	156_A	0.957	0.99
396_Y	427_Q	0.953	0.99
21_V	170_Y	0.946	0.99
81_H	389_H	0.946	0.99
11_Y	440_N	0.944	0.99
424_A	429_Y	0.944	0.99
85_D	389_H	0.939	0.99
201_V	204_Y	0.939	0.99
27_I	67_M	0.938	0.99
288_N	292_D	0.938	0.99
23_A	26_D	0.935	0.99
245_T	253_V	0.931	0.99
79_P	87_I	0.929	0.99
67_M	74_V	0.928	0.99
214_K	391_R	0.927	0.99
393_E	397_Q	0.925	0.99
80_T	159_P	0.925	0.99
80_T	205_I	0.924	0.99
135_T	162_H	0.922	0.99
71_E	97_Y	0.921	0.99
171_G	398_M	0.915	0.99
14_V	209_T	0.915	0.99
257_V	267_P	0.913	0.99
209_T	411_H	0.909	0.99
254_S	258_E	0.905	0.99
149_V	158_N	0.903	0.99
245_T	319_P	0.903	0.99
68_S	71_E	0.902	0.99
19_T	30_F	0.902	0.99
217_T	220_E	0.900	0.99
350_I	378_A	0.897	0.99
346_D	377_G	0.891	0.99
436_H	442_N	0.890	0.99
243_A	353_S	0.887	0.99
291_D	294_G	0.884	0.99
12_E	439_E	0.883	0.99
375_M	439_E	0.882	0.99
22_R	25_D	0.878	0.99
25_D	73_D	0.870	0.98
21_V	28_V	0.868	0.98
295_M	312_E	0.868	0.98
309_V	312_E	0.866	0.98
259_F	386_V	0.865	0.98
169_V	194_I	0.862	0.98
290_P	294_G	0.861	0.98
83_H	86_H	0.861	0.98
11_Y	438_T	0.861	0.98
174_K	395_H	0.860	0.98
351_I	381_Y	0.853	0.98
6_A	20_A	0.852	0.98
409_P	435_L	0.848	0.98
173_D	411_H	0.847	0.98
397_Q	400_D	0.847	0.98
264_G	316_N	0.847	0.98
399_L	429_Y	0.844	0.98
94_A	98_D	0.837	0.98
425_K	435_L	0.837	0.98
158_N	174_K	0.833	0.98
30_F	161_L	0.831	0.98
171_G	204_Y	0.825	0.98
104_S	155_D	0.823	0.98
307_K	311_N	0.821	0.98
192_R	196_R	0.820	0.98
421_A	437_M	0.820	0.98
108_I	112_K	0.819	0.98
50_M	56_I	0.815	0.98
261_K	290_P	0.814	0.98
206_E	395_H	0.810	0.98
242_V	348_D	0.805	0.97
113_G	276_R	0.804	0.97
212_G	419_P	0.802	0.97
343_D	350_I	0.802	0.97
136_M	144_L	0.801	0.97
316_N	320_I	0.800	0.97
85_D	411_H	0.795	0.97
133_G	193_E	0.794	0.97
395_H	423_L	0.793	0.97
142_C	163_T	0.791	0.97
392_E	395_H	0.790	0.97
137_E	140_D	0.788	0.97
407_L	429_Y	0.784	0.97
215_G	391_R	0.777	0.97
328_P	333_T	0.776	0.97
114_E	250_I	0.776	0.97
336_G	372_L	0.776	0.97
226_H	382_D	0.774	0.97
109_E	280_T	0.773	0.97
109_E	112_K	0.772	0.97
26_D	76_A	0.772	0.97
240_G	342_Y	0.771	0.97
30_F	410_A	0.770	0.97
365_Q	376_Q	0.770	0.97
211_A	395_H	0.769	0.97
78_V	139_G	0.769	0.97
85_D	209_T	0.769	0.97
193_E	197_E	0.767	0.97
276_R	279_G	0.765	0.97
337_R	372_L	0.765	0.97
148_H	183_E	0.764	0.97
90_I	115_I	0.762	0.97
240_G	348_D	0.760	0.96
87_I	114_E	0.759	0.96
103_G	127_L	0.757	0.96
208_C	417_M	0.756	0.96
227_L	231_L	0.755	0.96
258_E	288_N	0.755	0.96
28_V	161_L	0.754	0.96
78_V	136_M	0.754	0.96
151_H	389_H	0.753	0.96
147_V	169_V	0.750	0.96
18_M	32_M	0.750	0.96
85_D	151_H	0.749	0.96
231_L	318_L	0.748	0.96
252_R	388_G	0.746	0.96
86_H	151_H	0.741	0.96
116_E	119_Q	0.741	0.96
107_T	254_S	0.739	0.96
400_D	428_G	0.737	0.96
317_F	321_V	0.737	0.96
259_F	263_I	0.735	0.96
309_V	317_F	0.731	0.96
53_L	56_I	0.731	0.96
21_V	168_V	0.726	0.95
238_D	315_E	0.725	0.95
176_M	394_G	0.723	0.95
95_H	118_E	0.722	0.95
307_K	341_P	0.722	0.95
290_P	293_L	0.721	0.95
230_V	233_S	0.721	0.95
204_Y	407_L	0.720	0.95
110_L	277_Y	0.719	0.95
420_Y	423_L	0.717	0.95
227_L	351_I	0.717	0.95
224_R	255_S	0.717	0.95
246_F	354_A	0.714	0.95
372_L	375_M	0.710	0.95
182_L	251_S	0.709	0.95
176_M	398_M	0.709	0.95
81_H	85_D	0.707	0.95
200_G	405_Q	0.706	0.95
76_A	139_G	0.703	0.95
82_G	107_T	0.703	0.95
278_S	320_I	0.702	0.95
240_G	314_K	0.702	0.95
26_D	73_D	0.701	0.94
397_Q	401_A	0.701	0.94
399_L	420_Y	0.697	0.94
133_G	145_E	0.696	0.94
241_I	349_K	0.696	0.94
105_P	284_M	0.694	0.94
269_L	275_E	0.693	0.94
233_S	381_Y	0.691	0.94
23_A	140_D	0.691	0.94
370_E	374_R	0.689	0.94
83_H	411_H	0.687	0.94
28_V	138_I	0.685	0.94
209_T	246_F	0.685	0.94
178_H	400_D	0.683	0.94
240_G	316_N	0.682	0.94
167_A	197_E	0.681	0.94
177_D	394_G	0.680	0.94
21_V	142_C	0.680	0.94
83_H	173_D	0.672	0.93
67_M	71_E	0.672	0.93
97_Y	100_P	0.672	0.93
428_G	431_I	0.671	0.93
272_R	334_R	0.667	0.93
418_A	422_K	0.666	0.93
150_T	251_S	0.665	0.93
429_Y	435_L	0.663	0.93
147_V	194_I	0.661	0.93
173_D	389_H	0.659	0.92
12_E	417_M	0.657	0.92
85_D	172_L	0.656	0.92
114_E	273_S	0.655	0.92
65_R	68_S	0.655	0.92
270_L	335_M	0.652	0.92
438_T	442_N	0.651	0.92
216_R	226_H	0.650	0.92
329_Q	333_T	0.649	0.92
291_D	295_M	0.647	0.92
246_F	411_H	0.645	0.92
19_T	170_Y	0.644	0.92
414_M	437_M	0.642	0.91
191_F	402_L	0.641	0.91
308_R	312_E	0.640	0.91
424_A	430_K	0.637	0.91
391_R	394_G	0.637	0.91
203_C	405_Q	0.637	0.91
149_V	191_F	0.637	0.91
335_M	342_Y	0.636	0.91
328_P	332_L	0.635	0.91
211_A	419_P	0.633	0.91
226_H	230_V	0.633	0.91
228_K	259_F	0.632	0.91
374_R	380_I	0.632	0.91
420_Y	424_A	0.630	0.91
118_E	121_F	0.629	0.91
86_H	389_H	0.625	0.90
314_K	317_F	0.624	0.90
87_I	110_L	0.624	0.90
261_K	267_P	0.623	0.90
201_V	402_L	0.623	0.90
50_M	53_L	0.622	0.90
13_E	16_R	0.621	0.90
3_I	165_E	0.621	0.90
166_G	202_L	0.621	0.90
310_M	318_L	0.620	0.90
86_H	209_T	0.620	0.90
349_K	379_R	0.619	0.90
102_V	128_V	0.619	0.90
32_M	77_I	0.618	0.90
54_D	63_D	0.617	0.90
229_D	232_T	0.615	0.90
224_R	259_F	0.615	0.90
256_L	260_A	0.615	0.90
216_R	221_S	0.613	0.89
233_S	237_Y	0.613	0.89
52_S	56_I	0.612	0.89
148_H	155_D	0.611	0.89
351_I	359_E	0.610	0.89
120_K	124_E	0.610	0.89
85_D	173_D	0.609	0.89
24_G	140_D	0.609	0.89
29_I	32_M	0.603	0.89
26_D	142_C	0.603	0.89
89_A	92_K	0.603	0.89
82_G	87_I	0.602	0.89
230_V	349_K	0.600	0.88
286_R	293_L	0.598	0.88
409_P	437_M	0.597	0.88
423_L	426_S	0.597	0.88
9_G	13_E	0.597	0.88
207_D	389_H	0.596	0.88
288_N	291_D	0.595	0.88
74_V	77_I	0.595	0.88
259_F	262_E	0.593	0.88
362_N	365_Q	0.591	0.88
149_V	398_M	0.591	0.88
8_I	69_D	0.591	0.88
258_E	261_K	0.591	0.88
261_K	293_L	0.590	0.88
373_L	377_G	0.590	0.88
83_H	207_D	0.589	0.88
240_G	312_E	0.589	0.88
225_R	228_K	0.589	0.88
343_D	376_Q	0.589	0.88
174_K	390_L	0.588	0.87
200_G	402_L	0.587	0.87
130_M	157_I	0.587	0.87
130_M	144_L	0.587	0.87
13_E	35_N	0.586	0.87
90_I	101_I	0.586	0.87
106_F	154_I	0.584	0.87
90_I	99_A	0.584	0.87
103_G	107_T	0.584	0.87
7_T	408_I	0.584	0.87
361_T	365_Q	0.582	0.87
279_G	282_E	0.582	0.87
178_H	397_Q	0.582	0.87
369_S	372_L	0.581	0.87
83_H	172_L	0.581	0.87
142_C	161_L	0.581	0.87
168_V	203_C	0.581	0.87
406_H	431_I	0.579	0.87
230_V	383_D	0.578	0.87
209_T	389_H	0.578	0.87
11_Y	19_T	0.577	0.86
3_I	23_A	0.577	0.86
242_V	321_V	0.576	0.86
71_E	74_V	0.575	0.86
319_P	322_T	0.575	0.86
252_R	387_S	0.575	0.86
239_G	347_G	0.574	0.86
90_I	102_V	0.573	0.86
7_T	19_T	0.571	0.86
330_A	335_M	0.570	0.86
64_D	67_M	0.570	0.86
3_I	7_T	0.568	0.86
306_F	312_E	0.567	0.86
327_E	331_M	0.566	0.85
389_H	411_H	0.566	0.85
113_G	116_E	0.565	0.85
216_R	397_Q	0.565	0.85
338_G	343_D	0.564	0.85
332_L	336_G	0.564	0.85
180_P	224_R	0.562	0.85
19_T	80_T	0.562	0.85
361_T	369_S	0.561	0.85
16_R	355_S	0.559	0.85
212_G	416_G	0.558	0.85
172_L	389_H	0.557	0.85
167_A	202_L	0.556	0.84
11_Y	410_A	0.555	0.84
312_E	315_E	0.554	0.84
30_F	168_V	0.552	0.84
172_L	209_T	0.551	0.84
371_Q	377_G	0.551	0.84
216_R	393_E	0.550	0.84
394_G	397_Q	0.549	0.84
94_A	115_I	0.548	0.84
410_A	417_M	0.548	0.84
238_D	241_I	0.545	0.83
385_H	388_G	0.544	0.83
396_Y	424_A	0.544	0.83
268_I	312_E	0.544	0.83
5_I	408_I	0.543	0.83
371_Q	413_D	0.538	0.82
213_K	391_R	0.536	0.82
194_I	402_L	0.535	0.82
71_E	98_D	0.535	0.82
90_I	111_V	0.534	0.82
240_G	266_E	0.534	0.82
151_H	252_R	0.533	0.82
373_L	376_Q	0.533	0.82
372_L	376_Q	0.532	0.82
275_E	279_G	0.531	0.82
287_V	292_D	0.531	0.82
151_H	411_H	0.531	0.82
414_M	417_M	0.531	0.82
18_M	89_A	0.531	0.82
29_I	93_L	0.530	0.82
315_E	318_L	0.529	0.81
81_H	411_H	0.529	0.81
7_T	438_T	0.529	0.81
94_A	97_Y	0.528	0.81
167_A	200_G	0.527	0.81
340_T	344_I	0.527	0.81
321_V	327_E	0.525	0.81
286_R	292_D	0.525	0.81
64_D	97_Y	0.523	0.81
7_T	11_Y	0.523	0.81
151_H	173_D	0.522	0.81
395_H	420_Y	0.522	0.81
77_I	97_Y	0.521	0.80
21_V	205_I	0.520	0.80
340_T	370_E	0.519	0.80
170_Y	205_I	0.518	0.80
224_R	228_K	0.517	0.80
51_H	55_L	0.517	0.80
175_R	388_G	0.516	0.80
16_R	356_V	0.515	0.80
266_E	316_N	0.513	0.79
417_M	420_Y	0.512	0.79
107_T	130_M	0.512	0.79
428_G	435_L	0.512	0.79
28_V	144_L	0.512	0.79
64_D	68_S	0.511	0.79
392_E	396_Y	0.510	0.79
355_S	358_P	0.510	0.79
288_N	293_L	0.510	0.79
121_F	332_L	0.508	0.79
20_A	67_M	0.507	0.79
355_S	364_G	0.507	0.79
317_F	322_T	0.504	0.78
354_A	358_P	0.504	0.78
29_I	77_I	0.503	0.78
102_V	138_I	0.503	0.78
305_A	310_M	0.503	0.78
305_A	309_V	0.502	0.78
370_E	380_I	0.502	0.78
398_M	402_L	0.502	0.78
91_S	118_E	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bk2A	2	0.9286	100	0.279	Contact Map
3zq4A	3	0.9263	100	0.294	Contact Map
2i7tA	1	0.8259	100	0.327	Contact Map
3iekA	3	0.8839	100	0.333	Contact Map
2ycbA	2	0.9107	100	0.343	Contact Map
3af5A	1	0.9129	100	0.353	Contact Map
2xr1A	2	0.8996	100	0.353	Contact Map
2i7xA	1	0.8973	100	0.409	Contact Map
2az4A	1	0.8661	100	0.417	Contact Map
4b87A	1	0.7254	100	0.506	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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