Q9HQB9 - HALSA - GREMLIN Contacts

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Q9HQB9 - Uncharacterized protein

UniProt:	Q9HQB9	Sequences: MPRIDAPPRQRQWAVAALGAVLAAASVAHFLLHDDYEHPVRVAAMIIPTLGVFGYGLWFWLLASSVPRGDAVAVWAVGGAGLVLALDLWAVLAGAYGAITVQHVVIQHASFGALGGAVAGTYAERDRWRGRSRARLMAALDSAMDGIAMIDDAEQTVQYANASFTGGTDAERVRGQSWQSLYPSESHGPIADALVALDDGDQQQWQGIVTACGADGTTYPQELTMTAVADGYVWVCRDVTDRRDHSQRLRVLRRVLRHDTRNALNVVLGRANRIESRLGDEDDTAGQATHEPDLAAIQDAATGLLETSEKSRALADALARGDAGTESVADIVRTEATAVRDAHAETAVVVTVEADAAVDERLRLGIRELLSNAAEHAPTDAPRVEVSVTGNPLAVRVHDNGPGIPEAEQRVLSGQAETPLKHSSGVGLWVVYWIVRQTGGTVSVDDGDIVITPATQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	456 (364)
Sequences:	11467 (9924)
Seq/√Len:	520.2

ECOLI - ARCB EVGS ATOS RCSD RCSC PHOR NTRB DPIB DCUS TORS BARA
BACSU - KINE KINA YYCG PHOR RESE KINC CITS MALK DCTS
HALSA - Q9HQB9 BAT O51970 Q9HR10 Q9HQ16 Q9HRE4 Q9HQG5 Q9HRG1 Q9HNM2 Q9HNA6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
271_A	297_I	3.913	1.00
326_E	358_V	3.617	1.00
447_G	450_V	3.460	1.00
398_H	453_P	3.280	1.00
377_A	400_N	3.127	1.00
399_D	403_G	3.075	1.00
409_Q	444_V	3.052	1.00
431_V	442_V	3.045	1.00
145_D	237_R	3.034	1.00
432_Y	436_R	2.948	1.00
387_S	396_R	2.926	1.00
396_R	453_P	2.828	1.00
246_S	249_L	2.704	1.00
358_V	438_T	2.678	1.00
275_E	295_A	2.558	1.00
365_G	435_V	2.557	1.00
405_P	408_E	2.483	1.00
275_E	298_Q	2.481	1.00
268_L	301_A	2.430	1.00
325_T	357_A	2.421	1.00
327_S	330_D	2.419	1.00
115_G	118_V	2.382	1.00
385_E	398_H	2.380	1.00
349_V	383_R	2.371	1.00
404_I	408_E	2.359	1.00
152_D	156_T	2.343	1.00
444_V	454_A	2.327	1.00
351_T	383_R	2.313	1.00
329_A	388_V	2.270	1.00
389_T	394_A	2.256	1.00
413_S	442_V	2.229	1.00
83_V	88_L	2.185	1.00
445_D	453_P	2.151	1.00
118_V	122_Y	2.086	1.00
334_T	363_R	2.067	1.00
389_T	396_R	2.034	1.00
351_T	385_E	2.025	1.00
365_G	434_I	1.998	1.00
435_V	440_G	1.995	1.00
358_V	362_L	1.990	1.00
387_S	398_H	1.976	1.00
122_Y	125_R	1.970	1.00
148_A	234_W	1.967	1.00
377_A	384_V	1.961	1.00
208_I	243_R	1.954	1.00
353_E	387_S	1.947	1.00
365_G	431_V	1.919	1.00
163_S	166_G	1.908	1.00
409_Q	446_D	1.892	1.00
382_P	400_N	1.867	1.00
133_R	137_M	1.863	1.00
122_Y	126_D	1.859	1.00
383_R	400_N	1.855	1.00
377_A	382_P	1.839	1.00
268_L	302_T	1.833	1.00
446_D	452_T	1.774	1.00
434_I	438_T	1.763	1.00
404_I	412_L	1.761	1.00
366_I	395_V	1.736	1.00
353_E	385_E	1.718	1.00
146_G	236_C	1.712	1.00
213_G	217_T	1.709	1.00
267_V	301_A	1.696	1.00
242_R	246_S	1.690	1.00
361_R	364_L	1.688	1.00
406_E	409_Q	1.688	1.00
119_A	122_Y	1.682	1.00
274_I	294_L	1.672	1.00
108_H	111_F	1.662	1.00
140_L	159_Y	1.660	1.00
275_E	291_E	1.658	1.00
137_M	141_D	1.631	1.00
339_V	367_R	1.611	1.00
274_I	290_H	1.582	1.00
436_R	441_T	1.575	1.00
272_N	298_Q	1.557	1.00
411_V	417_E	1.533	1.00
323_A	357_A	1.509	1.00
335_E	363_R	1.494	1.00
271_A	298_Q	1.492	1.00
405_P	448_D	1.491	1.00
130_G	133_R	1.485	1.00
270_R	296_A	1.484	1.00
143_A	147_I	1.469	1.00
270_R	293_D	1.467	1.00
446_D	450_V	1.454	1.00
222_E	237_R	1.449	1.00
126_D	130_G	1.445	1.00
340_R	344_A	1.441	1.00
148_A	157_V	1.435	1.00
196_A	200_G	1.423	1.00
162_A	166_G	1.419	1.00
222_E	242_R	1.417	1.00
176_Q	180_S	1.405	1.00
245_H	248_R	1.403	1.00
245_H	249_L	1.396	1.00
132_S	135_R	1.388	1.00
112_G	115_G	1.387	1.00
371_S	375_E	1.373	1.00
413_S	444_V	1.361	1.00
378_P	382_P	1.359	1.00
412_L	444_V	1.348	1.00
213_G	219_Y	1.345	1.00
244_D	248_R	1.338	1.00
408_E	411_V	1.308	1.00
414_G	417_E	1.308	1.00
343_H	374_A	1.306	1.00
160_A	165_T	1.299	1.00
104_V	108_H	1.293	1.00
404_I	444_V	1.292	1.00
169_D	172_R	1.280	1.00
244_D	247_Q	1.275	1.00
168_T	214_A	1.264	1.00
361_R	434_I	1.263	1.00
267_V	297_I	1.261	1.00
331_I	335_E	1.260	1.00
266_V	300_A	1.256	1.00
238_D	242_R	1.250	1.00
111_F	115_G	1.247	1.00
446_D	449_I	1.243	1.00
91_V	94_G	1.241	1.00
165_T	170_A	1.239	1.00
404_I	452_T	1.214	1.00
362_L	438_T	1.213	1.00
305_L	309_E	1.211	1.00
223_L	236_C	1.208	1.00
239_V	243_R	1.204	1.00
333_R	352_V	1.201	1.00
271_A	301_A	1.199	1.00
329_A	333_R	1.187	1.00
99_I	102_Q	1.178	1.00
130_G	134_A	1.172	1.00
148_A	164_F	1.170	1.00
361_R	437_Q	1.164	1.00
243_R	247_Q	1.163	1.00
295_A	299_D	1.162	1.00
411_V	414_G	1.151	1.00
129_R	133_R	1.151	1.00
105_V	108_H	1.146	1.00
298_Q	302_T	1.138	1.00
364_L	434_I	1.130	1.00
408_E	417_E	1.129	1.00
306_E	360_E	1.126	1.00
291_E	295_A	1.119	1.00
419_P	422_H	1.115	1.00
210_T	220_P	1.115	1.00
209_V	223_L	1.104	1.00
136_L	140_L	1.102	1.00
195_V	199_D	1.101	1.00
259_D	262_N	1.095	1.00
404_I	409_Q	1.090	1.00
296_A	300_A	1.086	1.00
392_P	441_T	1.079	1.00
210_T	218_T	1.077	1.00
165_T	169_D	1.077	1.00
271_A	275_E	1.076	1.00
183_P	186_S	1.074	1.00
115_G	119_A	1.065	1.00
271_A	294_L	1.062	1.00
125_R	129_R	1.060	1.00
150_I	234_W	1.054	1.00
220_P	243_R	1.051	1.00
339_V	370_L	1.045	1.00
435_V	442_V	1.037	1.00
300_A	303_G	1.036	1.00
177_S	180_S	1.025	1.00
241_D	244_D	1.025	1.00
402_P	421_K	1.022	1.00
243_R	246_S	1.021	1.00
323_A	358_V	1.013	1.00
260_T	304_L	1.012	1.00
323_A	438_T	1.011	1.00
255_V	415_Q	1.009	1.00
88_L	91_V	1.000	1.00
239_V	242_R	0.999	1.00
88_L	92_L	0.998	1.00
328_V	395_V	0.997	1.00
206_Q	222_E	0.996	1.00
87_D	90_A	0.996	1.00
332_V	386_V	0.996	1.00
268_L	305_L	0.994	1.00
129_R	132_S	0.993	1.00
343_H	350_V	0.990	1.00
160_A	164_F	0.988	1.00
292_P	296_A	0.981	1.00
278_L	290_H	0.981	1.00
262_N	266_V	0.972	1.00
328_V	393_L	0.972	1.00
146_G	164_F	0.972	1.00
336_A	352_V	0.968	1.00
277_R	290_H	0.963	1.00
386_V	397_V	0.963	1.00
279_G	290_H	0.962	1.00
335_E	339_V	0.957	1.00
97_G	102_Q	0.954	1.00
92_L	95_A	0.948	1.00
126_D	129_R	0.947	1.00
149_M	233_V	0.945	1.00
444_V	452_T	0.944	1.00
125_R	128_W	0.938	1.00
141_D	162_A	0.937	1.00
257_R	262_N	0.936	1.00
375_E	420_L	0.936	1.00
87_D	91_V	0.933	1.00
342_A	345_E	0.932	1.00
266_V	270_R	0.929	1.00
283_D	290_H	0.925	1.00
259_D	300_A	0.923	1.00
336_A	350_V	0.922	1.00
225_M	232_Y	0.921	1.00
135_R	149_M	0.920	1.00
338_A	367_R	0.919	1.00
332_V	366_I	0.915	1.00
108_H	112_G	0.914	1.00
124_E	128_W	0.912	1.00
310_K	361_R	0.908	1.00
399_D	451_I	0.905	1.00
333_R	337_T	0.905	1.00
426_V	430_V	0.904	1.00
385_E	400_N	0.900	1.00
337_T	340_R	0.899	1.00
150_I	157_V	0.897	1.00
102_Q	108_H	0.890	1.00
121_T	124_E	0.883	1.00
270_R	300_A	0.881	1.00
366_I	397_V	0.881	1.00
282_D	290_H	0.880	1.00
361_R	438_T	0.880	1.00
256_L	311_S	0.880	1.00
373_A	384_V	0.879	1.00
192_D	196_A	0.876	1.00
206_Q	224_T	0.875	1.00
369_L	431_V	0.873	1.00
415_Q	433_W	0.873	1.00
162_A	165_T	0.866	1.00
165_T	173_V	0.855	1.00
326_E	331_I	0.853	1.00
331_I	358_V	0.853	1.00
327_S	355_D	0.851	1.00
382_P	388_V	0.851	1.00
412_L	454_A	0.850	1.00
186_S	210_T	0.850	1.00
339_V	374_A	0.848	1.00
323_A	439_G	0.848	1.00
346_T	350_V	0.847	1.00
212_C	218_T	0.846	1.00
226_T	233_V	0.844	1.00
259_D	263_A	0.843	1.00
261_R	305_L	0.842	1.00
369_L	454_A	0.841	1.00
112_G	118_V	0.840	1.00
147_I	161_N	0.838	1.00
109_A	115_G	0.837	1.00
95_A	105_V	0.831	1.00
266_V	296_A	0.828	1.00
136_L	139_A	0.825	1.00
257_R	261_R	0.821	1.00
191_A	195_V	0.821	1.00
369_L	397_V	0.820	1.00
156_T	177_S	0.818	1.00
418_T	421_K	0.816	1.00
299_D	334_T	0.814	1.00
297_I	301_A	0.813	1.00
97_G	100_T	0.810	1.00
219_Y	238_D	0.810	1.00
84_L	89_W	0.809	1.00
378_P	402_P	0.807	1.00
251_V	415_Q	0.807	1.00
366_I	370_L	0.803	1.00
112_G	116_G	0.802	1.00
100_T	104_V	0.797	1.00
220_P	240_T	0.797	1.00
376_H	420_L	0.795	1.00
344_A	347_A	0.794	1.00
343_H	384_V	0.794	1.00
160_A	173_V	0.792	1.00
135_R	159_Y	0.789	1.00
402_P	446_D	0.788	1.00
168_T	172_R	0.788	1.00
394_A	443_S	0.786	1.00
332_V	388_V	0.784	1.00
133_R	136_L	0.783	1.00
406_E	447_G	0.783	1.00
92_L	109_A	0.779	1.00
161_N	238_D	0.779	1.00
189_P	192_D	0.778	1.00
119_A	123_A	0.778	1.00
83_V	87_D	0.775	1.00
120_G	124_E	0.773	1.00
277_R	280_D	0.768	1.00
300_A	304_L	0.766	1.00
262_N	269_G	0.762	1.00
433_W	436_R	0.762	1.00
260_T	263_A	0.758	1.00
119_A	125_R	0.756	1.00
89_W	92_L	0.753	1.00
275_E	294_L	0.750	1.00
115_G	122_Y	0.749	1.00
89_W	104_V	0.748	1.00
114_L	117_A	0.747	1.00
123_A	127_R	0.743	1.00
363_R	367_R	0.740	1.00
109_A	112_G	0.738	1.00
238_D	243_R	0.737	1.00
303_G	363_R	0.734	1.00
127_R	131_R	0.733	1.00
396_R	445_D	0.732	1.00
368_E	431_V	0.731	1.00
293_D	297_I	0.730	1.00
104_V	107_Q	0.730	1.00
128_W	132_S	0.729	1.00
113_A	117_A	0.727	1.00
188_G	192_D	0.725	1.00
343_H	348_V	0.724	1.00
404_I	410_R	0.723	1.00
250_R	255_V	0.722	1.00
402_P	452_T	0.722	1.00
265_N	269_G	0.721	1.00
335_E	370_L	0.721	1.00
279_G	291_E	0.721	1.00
111_F	114_L	0.720	1.00
91_V	95_A	0.719	1.00
119_A	126_D	0.718	1.00
227_A	232_Y	0.717	1.00
261_R	312_R	0.717	1.00
102_Q	105_V	0.715	1.00
335_E	367_R	0.714	1.00
101_V	105_V	0.714	1.00
149_M	159_Y	0.711	1.00
131_R	135_R	0.711	1.00
302_T	305_L	0.711	1.00
301_A	305_L	0.705	1.00
150_I	178_W	0.703	1.00
97_G	101_V	0.702	1.00
139_A	149_M	0.701	1.00
252_L	255_V	0.700	1.00
105_V	112_G	0.700	1.00
83_V	91_V	0.698	1.00
313_A	361_R	0.698	1.00
292_P	295_A	0.698	1.00
314_L	429_W	0.694	1.00
362_L	366_I	0.693	1.00
132_S	136_L	0.692	1.00
336_A	340_R	0.692	1.00
368_E	424_S	0.691	1.00
348_V	377_A	0.690	1.00
261_R	309_E	0.689	1.00
150_I	225_M	0.687	1.00
266_V	269_G	0.686	1.00
269_G	273_R	0.685	1.00
259_D	307_T	0.684	1.00
263_A	304_L	0.682	1.00
259_D	364_L	0.681	1.00
404_I	446_D	0.680	1.00
273_R	293_D	0.680	1.00
326_E	362_L	0.678	1.00
197_L	232_Y	0.678	1.00
316_D	424_S	0.676	1.00
97_G	105_V	0.675	1.00
274_I	297_I	0.672	1.00
87_D	94_G	0.671	1.00
134_A	138_A	0.666	1.00
406_E	410_R	0.663	1.00
331_I	363_R	0.663	1.00
251_V	255_V	0.662	1.00
377_A	380_D	0.662	1.00
413_S	454_A	0.659	1.00
322_D	359_D	0.659	1.00
146_G	161_N	0.659	1.00
172_R	214_A	0.658	1.00
161_N	164_F	0.658	1.00
188_G	191_A	0.657	1.00
84_L	104_V	0.654	1.00
416_A	429_W	0.652	1.00
225_M	234_W	0.652	1.00
190_I	193_A	0.651	1.00
255_V	262_N	0.650	1.00
84_L	88_L	0.649	1.00
259_D	304_L	0.648	1.00
261_R	304_L	0.648	1.00
259_D	430_V	0.647	1.00
84_L	87_D	0.645	1.00
112_G	119_A	0.644	1.00
253_R	256_L	0.642	1.00
296_A	299_D	0.640	1.00
152_D	158_Q	0.638	1.00
241_D	245_H	0.637	1.00
231_G	234_W	0.636	1.00
162_A	170_A	0.636	1.00
184_S	187_H	0.635	1.00
98_A	102_Q	0.635	1.00
348_V	382_P	0.633	1.00
431_V	435_V	0.632	1.00
302_T	306_E	0.632	1.00
376_H	402_P	0.632	1.00
388_V	395_V	0.630	1.00
146_G	149_M	0.630	1.00
83_V	86_L	0.626	1.00
114_L	118_V	0.625	1.00
416_A	426_V	0.624	1.00
332_V	395_V	0.623	1.00
258_H	262_N	0.622	1.00
309_E	313_A	0.621	1.00
101_V	104_V	0.620	1.00
268_L	272_N	0.619	1.00
268_L	298_Q	0.619	1.00
118_V	125_R	0.618	1.00
270_R	297_I	0.618	1.00
280_D	290_H	0.617	1.00
338_A	363_R	0.617	1.00
267_V	300_A	0.616	1.00
258_H	368_E	0.616	1.00
260_T	308_S	0.616	1.00
314_L	415_Q	0.612	1.00
150_I	194_L	0.610	1.00
348_V	374_A	0.610	1.00
105_V	109_A	0.610	1.00
170_A	174_R	0.609	1.00
259_D	368_E	0.607	1.00
85_A	91_V	0.607	1.00
253_R	257_R	0.606	1.00
86_L	89_W	0.606	1.00
111_F	118_V	0.606	1.00
89_W	100_T	0.606	1.00
123_A	126_D	0.606	1.00
412_L	429_W	0.605	1.00
254_R	259_D	0.605	1.00
193_A	196_A	0.604	1.00
164_F	236_C	0.604	1.00
372_N	427_G	0.604	1.00
312_R	316_D	0.604	1.00
238_D	246_S	0.602	1.00
89_W	108_H	0.599	1.00
83_V	89_W	0.597	0.99
104_V	109_A	0.596	0.99
117_A	121_T	0.595	0.99
90_A	94_G	0.592	0.99
342_A	371_S	0.592	0.99
369_L	442_V	0.592	0.99
196_A	201_D	0.588	0.99
339_V	371_S	0.588	0.99
98_A	105_V	0.588	0.99
336_A	370_L	0.584	0.99
433_W	437_Q	0.583	0.99
348_V	400_N	0.583	0.99
385_E	388_V	0.583	0.99
159_Y	170_A	0.578	0.99
294_L	298_Q	0.576	0.99
346_T	374_A	0.576	0.99
136_L	233_V	0.573	0.99
312_R	315_A	0.573	0.99
260_T	307_T	0.572	0.99
311_S	315_A	0.572	0.99
304_L	307_T	0.570	0.99
83_V	92_L	0.569	0.99
160_A	163_S	0.568	0.99
100_T	111_F	0.568	0.99
312_R	424_S	0.566	0.99
365_G	438_T	0.565	0.99
292_P	337_T	0.563	0.99
182_Y	187_H	0.563	0.99
415_Q	426_V	0.562	0.99
376_H	400_N	0.561	0.99
372_N	403_G	0.561	0.99
189_P	193_A	0.560	0.99
83_V	95_A	0.557	0.99
220_P	224_T	0.556	0.99
179_Q	187_H	0.555	0.99
404_I	454_A	0.554	0.99
197_L	225_M	0.553	0.99
409_Q	412_L	0.552	0.99
224_T	227_A	0.552	0.99
161_N	240_T	0.549	0.99
250_R	254_R	0.548	0.99
242_R	249_L	0.547	0.99
109_A	113_A	0.547	0.99
89_W	95_A	0.547	0.99
183_P	210_T	0.546	0.99
404_I	428_L	0.546	0.99
100_T	105_V	0.545	0.99
341_D	344_A	0.545	0.99
149_M	161_N	0.545	0.99
100_T	108_H	0.544	0.99
140_L	233_V	0.544	0.99
250_R	314_L	0.544	0.99
295_A	298_Q	0.543	0.99
428_L	454_A	0.543	0.99
306_E	310_K	0.542	0.99
332_V	335_E	0.542	0.99
100_T	107_Q	0.542	0.99
250_R	318_L	0.541	0.99
128_W	131_R	0.540	0.99
373_A	397_V	0.539	0.99
269_G	300_A	0.539	0.99
382_P	386_V	0.538	0.99
107_Q	111_F	0.537	0.99
148_A	236_C	0.535	0.99
372_N	399_D	0.534	0.99
384_V	397_V	0.534	0.99
95_A	100_T	0.534	0.99
257_R	263_A	0.534	0.99
250_R	260_T	0.533	0.99
262_N	312_R	0.532	0.99
145_D	149_M	0.530	0.99
252_L	311_S	0.529	0.99
192_D	195_V	0.528	0.99
135_R	140_L	0.528	0.99
396_R	443_S	0.527	0.99
403_G	451_I	0.527	0.99
408_E	412_L	0.527	0.99
409_Q	413_S	0.526	0.99
280_D	283_D	0.525	0.99
383_R	398_H	0.524	0.99
330_D	334_T	0.523	0.99
273_R	277_R	0.522	0.99
370_L	386_V	0.521	0.99
262_N	376_H	0.520	0.99
134_A	137_M	0.520	0.99
179_Q	191_A	0.519	0.99
326_E	357_A	0.519	0.99
310_K	430_V	0.518	0.99
256_L	260_T	0.518	0.99
364_L	368_E	0.517	0.99
94_G	98_A	0.517	0.99
98_A	104_V	0.516	0.99
127_R	130_G	0.516	0.99
346_T	377_A	0.515	0.99
312_R	416_A	0.515	0.99
343_H	346_T	0.515	0.99
277_R	293_D	0.514	0.98
364_L	430_V	0.513	0.98
332_V	352_V	0.513	0.98
415_Q	429_W	0.513	0.98
83_V	104_V	0.513	0.98
108_H	114_L	0.507	0.98
149_M	158_Q	0.507	0.98
269_G	301_A	0.507	0.98
85_A	88_L	0.506	0.98
85_A	89_W	0.504	0.98
254_R	257_R	0.504	0.98
147_I	235_V	0.503	0.98
316_D	368_E	0.503	0.98
95_A	101_V	0.503	0.98
330_D	333_R	0.502	0.98
293_D	300_A	0.501	0.98
256_L	300_A	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4gczA	2	0.7237	100	0.443	Contact Map
4i5sA	2	0.8004	100	0.46	Contact Map
3a0rA	2	0.6535	100	0.473	Contact Map
4r3aA	1	0.636	100	0.548	Contact Map
3jz3A	2	0.3246	100	0.593	Contact Map
3d36A	2	0.4561	100	0.602	Contact Map
2c2aA	2	0.4693	100	0.606	Contact Map
4q20A	2	0.4693	100	0.61	Contact Map
2q8gA	2	0.6053	100	0.612	Contact Map
4mpcA	2	0.6118	100	0.613	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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