GREMLIN Database
Q9HQA5 - ATP-dependent helicase
UniProt: Q9HQA5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 946 (772)
Sequences: 1421 (834)
Seq/√Len: 30.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
439_E443_R6.0241.00
425_Y439_E5.4831.00
400_G441_T5.4321.00
570_A621_A4.5801.00
46_R216_E4.5021.00
159_V180_L4.3181.00
103_G110_V4.2881.00
425_Y442_F4.1571.00
185_E430_R3.9661.00
769_V778_L3.9391.00
184_V192_R3.8391.00
698_A767_S3.6771.00
422_W439_E3.6691.00
249_T252_M3.5721.00
425_Y429_T3.5581.00
409_I424_A3.5361.00
420_E423_H3.4911.00
438_T441_T3.4811.00
153_L156_V3.4661.00
174_A434_F3.4471.00
432_Y435_K3.3991.00
123_R127_T3.3341.00
623_R779_G3.2911.00
772_R777_E3.2491.00
270_L335_I3.2421.00
487_Y535_V3.1731.00
259_I341_Y3.0331.00
411_G474_Y2.9191.00
266_H366_E2.9061.00
204_E207_A2.8961.00
624_I635_V2.8951.00
526_T538_S2.8721.00
202_P205_I2.8661.00
524_R538_S2.8151.00
461_D465_S2.7911.00
462_D465_S2.7821.00
260_R289_L2.7721.00
620_S623_R2.7301.00
694_P774_Q2.7151.00
399_H435_K2.7051.00
399_H436_Q2.7051.00
270_L322_C2.6861.00
263_V319_G2.6731.00
66_V160_V2.6701.00
178_I428_I2.6671.00
151_D154_A2.6601.00
310_D314_S2.6421.00
111_D121_Q2.5881.00
118_T121_Q2.5761.00
210_T215_C2.5430.99
439_E442_F2.5140.99
45_G191_Q2.4950.99
109_E131_D2.4620.99
248_T251_A2.4290.99
164_V205_I2.4240.99
441_T750_E2.4190.99
248_T252_M2.4190.99
185_E423_H2.4190.99
600_A604_L2.4160.99
405_V428_I2.3990.99
120_Y124_Q2.3970.99
161_V209_L2.3800.99
51_V202_P2.3740.99
413_V464_I2.3390.99
635_V672_I2.3340.99
406_A445_V2.3190.99
563_Q772_R2.3110.99
233_P237_D2.2800.99
567_G571_T2.2740.99
598_R601_G2.2440.99
235_V238_A2.2360.99
262_I368_T2.2250.99
224_S230_V2.2200.99
20_R25_E2.2080.98
342_N372_G2.2050.98
47_N210_T2.2020.98
302_K306_I2.1920.98
461_D464_I2.1870.98
462_D466_T2.1710.98
187_A190_V2.1330.98
343_S379_E2.1320.98
205_I208_F2.1250.98
259_I263_V2.1210.98
79_G155_D2.1150.98
282_L341_Y2.1130.98
66_V82_A2.1120.98
354_V367_G2.0770.98
69_A157_E2.0710.98
184_V190_V2.0670.98
81_G131_D2.0520.97
41_A48_G2.0450.97
451_R454_V2.0390.97
96_R100_D2.0370.97
233_P236_T2.0310.97
271_I626_V2.0140.97
205_I211_G2.0140.97
311_R316_D1.9910.97
204_E208_F1.9790.97
444_A750_E1.9650.97
639_F769_V1.9640.97
257_R289_L1.9450.97
208_F433_P1.9420.96
83_L156_V1.9370.96
515_T522_M1.9280.96
258_A262_I1.9230.96
460_D464_I1.8990.96
369_V380_A1.8840.96
684_D687_A1.8780.96
401_S434_F1.8720.96
26_R101_W1.8590.95
83_L159_V1.8510.95
423_H426_N1.8480.95
224_S365_S1.8440.95
603_A606_R1.8240.95
559_Y639_F1.8170.95
111_D130_P1.8160.95
307_D311_R1.8130.95
33_E37_R1.8110.95
419_T424_A1.8090.95
50_V61_T1.8080.95
400_G438_T1.8050.95
174_A401_S1.8030.95
227_S366_E1.7980.95
754_R758_H1.7930.94
175_Q179_G1.7870.94
259_I339_V1.7860.94
506_V535_V1.7850.94
378_L603_A1.7670.94
263_V271_I1.7610.94
159_V183_L1.7590.94
651_V672_I1.7450.94
412_V424_A1.7390.93
262_I337_H1.7180.93
412_V419_T1.7160.93
600_A603_A1.7120.93
194_G209_L1.7100.93
81_G157_E1.7050.93
425_Y443_R1.7010.93
487_Y528_I1.7010.93
603_A607_M1.6750.92
185_E427_I1.6720.92
19_V68_D1.6720.92
38_A50_V1.6710.92
409_I445_V1.6670.92
461_D466_T1.6510.92
231_R258_A1.6410.91
78_D131_D1.6380.91
31_P39_V1.6370.91
597_H601_G1.6330.91
610_H788_A1.6270.91
206_G217_I1.6270.91
258_A261_E1.6260.91
412_V417_G1.6210.91
385_D389_E1.5980.90
559_Y768_D1.5930.90
203_H206_G1.5930.90
250_P253_A1.5800.90
525_I528_I1.5770.90
260_R644_N1.5640.89
567_G621_A1.5550.89
563_Q768_D1.5400.88
462_D467_S1.5340.88
768_D771_A1.5270.88
452_N456_Y1.5250.88
41_A216_E1.5230.88
570_A620_S1.5200.88
322_C477_N1.4980.87
501_L506_V1.4980.87
100_D104_E1.4950.87
225_N364_V1.4950.87
125_Q143_M1.4890.87
37_R40_P1.4870.87
85_V140_L1.4870.87
156_V159_V1.4850.87
271_I319_G1.4830.86
566_G621_A1.4830.86
181_E431_A1.4730.86
234_A238_A1.4680.86
718_V752_A1.4600.86
266_H337_H1.4590.86
181_E185_E1.4520.85
171_K403_D1.4510.85
420_E462_D1.4500.85
143_M152_G1.4500.85
159_V192_R1.4410.85
159_V190_V1.4410.85
566_G639_F1.4370.85
426_N429_T1.4360.85
628_Q782_I1.4320.84
60_E98_R1.4240.84
783_V787_T1.4170.84
141_Q408_Q1.4150.84
402_L437_L1.4110.84
67_F132_V1.4040.83
406_A449_L1.4030.83
148_T151_D1.3990.83
510_A525_I1.3980.83
199_V320_L1.3830.82
125_Q130_P1.3810.82
224_S358_G1.3770.82
693_D774_Q1.3760.82
205_I209_L1.3630.81
168_A199_V1.3450.80
570_A622_E1.3430.80
31_P36_R1.3420.80
626_V635_V1.3410.80
637_A644_N1.3320.80
208_F211_G1.3310.80
300_L308_V1.3310.80
385_D564_A1.3300.80
421_A443_R1.3260.79
607_M618_V1.3250.79
224_S228_F1.3240.79
408_Q413_V1.3190.79
559_Y765_R1.3120.79
421_A442_F1.3120.79
418_E465_S1.3120.79
141_Q179_G1.3110.79
234_A237_D1.3090.79
63_M86_T1.3090.79
453_R456_Y1.3080.79
337_H368_T1.3060.78
204_E210_T1.3030.78
623_R781_E1.3010.78
650_L697_V1.2970.78
204_E432_Y1.2930.78
249_T263_V1.2810.77
157_E547_V1.2770.77
502_D523_W1.2750.77
624_I639_F1.2730.77
521_E539_P1.2690.76
490_Y534_Q1.2660.76
738_R741_G1.2610.76
181_E430_R1.2560.76
461_D467_S1.2520.75
597_H603_A1.2510.75
202_P392_V1.2500.75
424_A651_V1.2480.75
85_V618_V1.2460.75
73_D81_G1.2400.75
375_D606_R1.2380.75
266_H269_V1.2340.74
610_H789_V1.2330.74
279_A392_V1.2320.74
817_R820_D1.2310.74
133_L357_A1.2310.74
182_R186_V1.2300.74
488_E497_Q1.2290.74
262_I265_R1.2270.74
468_G472_Q1.2180.73
229_E368_T1.2120.73
220_V230_V1.2110.73
378_L569_R1.2100.73
382_A386_R1.2020.72
193_I335_I1.2010.72
99_L102_W1.1990.72
117_T122_R1.1940.72
641_H669_P1.1920.72
51_V199_V1.1870.71
488_E500_T1.1860.71
203_H217_I1.1860.71
17_S164_V1.1850.71
48_G164_V1.1810.71
17_S21_N1.1790.71
132_V366_E1.1760.71
27_G122_R1.1740.70
772_R778_L1.1680.70
170_A177_A1.1670.70
104_E107_G1.1610.70
85_V635_V1.1590.69
114_H369_V1.1500.69
473_Y726_K1.1500.69
68_D72_S1.1460.69
63_M98_R1.1420.68
122_R762_D1.1370.68
176_L727_R1.1350.68
360_S363_A1.1340.68
129_P321_L1.1340.68
501_L519_R1.1320.68
80_F125_Q1.1280.67
67_F516_F1.1280.67
449_L455_V1.1270.67
15_L39_V1.1230.67
348_K620_S1.1220.67
248_T263_V1.1210.67
407_N479_S1.1170.67
389_E567_G1.1160.67
63_M99_L1.1160.67
182_R408_Q1.1140.66
685_V689_L1.1100.66
118_T124_Q1.1090.66
250_P255_H1.1080.66
268_S334_G1.1030.66
252_M255_H1.0980.65
464_I467_S1.0980.65
261_E444_A1.0950.65
67_F303_D1.0910.65
249_T318_D1.0910.65
294_G311_R1.0880.65
572_G607_M1.0880.65
413_V419_T1.0870.64
257_R261_E1.0850.64
705_L770_L1.0800.64
424_A464_I1.0790.64
408_Q411_G1.0770.64
596_T599_T1.0760.64
156_V190_V1.0760.64
98_R102_W1.0750.64
249_T262_I1.0750.64
233_P238_A1.0720.63
17_S20_R1.0700.63
202_P208_F1.0690.63
202_P207_A1.0680.63
303_D573_G1.0670.63
99_L103_G1.0660.63
16_G68_D1.0660.63
570_A623_R1.0650.63
270_L483_D1.0650.63
67_F369_V1.0640.63
40_P44_D1.0640.63
651_V689_L1.0640.63
460_D465_S1.0610.63
192_R209_L1.0600.62
69_A191_Q1.0600.62
559_Y563_Q1.0590.62
643_V765_R1.0560.62
249_T259_I1.0550.62
83_L223_T1.0530.62
440_E444_A1.0470.61
226_V230_V1.0430.61
425_Y437_L1.0400.61
402_L441_T1.0380.61
115_G298_G1.0350.61
218_I221_D1.0340.60
514_A624_I1.0330.60
227_S271_I1.0320.60
597_H600_A1.0300.60
126_A152_G1.0290.60
86_T98_R1.0280.60
666_D799_E1.0280.60
358_G361_R1.0260.60
44_D216_E1.0240.60
207_A432_Y1.0190.59
715_L724_A1.0190.59
213_R271_I1.0170.59
21_N25_E1.0150.59
402_L445_V1.0120.59
323_T552_G1.0100.59
144_L179_G1.0100.59
109_E128_D1.0090.59
722_F748_V1.0070.58
725_L733_G1.0040.58
525_I535_V1.0000.58
79_G167_L0.9990.58
393_E545_G0.9960.58
436_Q764_A0.9960.58
159_V188_G0.9960.58
249_T253_A0.9940.57
320_L326_M0.9930.57
122_R433_P0.9900.57
298_G537_V0.9900.57
85_V409_I0.9880.57
73_D127_T0.9880.57
260_R264_D0.9850.57
504_R549_S0.9840.57
47_N215_C0.9800.56
437_L442_F0.9800.56
167_L170_A0.9790.56
30_T36_R0.9720.56
70_L108_L0.9690.55
320_L700_L0.9660.55
448_E641_H0.9640.55
249_T258_A0.9630.55
264_D698_A0.9560.54
385_D593_Y0.9560.54
516_F705_L0.9540.54
182_R412_V0.9520.54
278_T480_M0.9520.54
403_D755_E0.9500.54
143_M722_F0.9490.54
66_V158_H0.9470.54
227_S368_T0.9440.53
46_R214_G0.9430.53
199_V202_P0.9420.53
407_N669_P0.9390.53
617_P781_E0.9390.53
204_E396_Q0.9380.53
347_V387_A0.9350.53
225_N228_F0.9340.53
129_P333_G0.9330.53
143_M293_I0.9330.53
64_L102_W0.9330.53
111_D125_Q0.9310.52
219_E224_S0.9300.52
85_V623_R0.9250.52
419_T427_I0.9170.51
177_A431_A0.9150.51
633_V787_T0.9140.51
382_A748_V0.9140.51
387_A390_G0.9100.51
566_G643_V0.9090.51
23_L64_L0.9080.51
144_L390_G0.9070.51
28_F518_Q0.9060.50
451_R455_V0.9050.50
713_F732_D0.9030.50
302_K785_E0.9010.50
217_I228_F0.8990.50
300_L498_V0.8990.50
110_V705_L0.8970.50
748_V819_Q0.8960.50
85_V617_P0.8960.50
236_T598_R0.8960.50
460_D463_T0.8920.49
683_T687_A0.8920.49
657_Q743_L0.8910.49
161_V651_V0.8910.49
112_V230_V0.8910.49
253_A256_V0.8900.49
78_D161_V0.8880.49
422_W443_R0.8860.49
733_G752_A0.8860.49
30_T490_Y0.8850.49
652_S674_L0.8820.49
407_N716_A0.8780.48
375_D569_R0.8770.48
204_E394_D0.8770.48
810_V813_T0.8740.48
285_R288_E0.8730.48
22_A407_N0.8730.48
271_I601_G0.8730.48
410_V470_T0.8700.48
40_P43_A0.8670.47
111_D118_T0.8660.47
471_W475_Y0.8660.47
692_T741_G0.8660.47
294_G304_A0.8650.47
252_M259_I0.8640.47
42_L48_G0.8630.47
806_A809_S0.8620.47
224_S363_A0.8620.47
618_V674_L0.8610.47
277_Q516_F0.8590.47
202_P217_I0.8580.47
194_G347_V0.8570.47
228_F519_R0.8520.46
672_I778_L0.8510.46
263_V266_H0.8510.46
231_R261_E0.8500.46
401_S432_Y0.8500.46
82_A400_G0.8500.46
89_R302_K0.8490.46
430_R789_V0.8460.46
85_V179_G0.8460.46
479_S669_P0.8440.46
705_L761_L0.8440.46
171_K755_E0.8430.45
83_L205_I0.8410.45
300_L562_A0.8400.45
227_S230_V0.8400.45
63_M102_W0.8390.45
386_R564_A0.8390.45
42_L191_Q0.8390.45
671_R793_G0.8390.45
160_V447_M0.8380.45
251_A258_A0.8370.45
463_T466_T0.8360.45
126_A146_G0.8350.45
270_L363_A0.8330.45
449_L454_V0.8330.45
536_E789_V0.8330.45
156_V428_I0.8320.45
319_G379_E0.8320.45
400_G434_F0.8300.44
308_V538_S0.8280.44
47_N495_G0.8270.44
139_T142_A0.8250.44
445_V727_R0.8240.44
394_D560_A0.8230.44
563_Q621_A0.8200.44
95_M720_A0.8200.44
139_T144_L0.8190.44
21_N618_V0.8170.43
86_T102_W0.8150.43
429_T540_I0.8150.43
749_Y753_I0.8140.43
428_I442_F0.8140.43
178_I434_F0.8140.43
46_R217_I0.8120.43
262_I266_H0.8070.43
401_S757_F0.8060.43
53_P88_L0.8060.43
179_G712_K0.8060.43
255_H273_V0.8040.42
115_G122_R0.8040.42
463_T467_S0.8020.42
604_L608_A0.8000.42
249_T254_S0.7990.42
695_D745_G0.7990.42
635_V689_L0.7980.42
449_L464_I0.7970.42
563_Q567_G0.7950.42
38_A62_A0.7940.42
656_G704_S0.7940.42
639_F772_R0.7930.42
768_D772_R0.7910.41
512_P647_L0.7900.41
73_D154_A0.7900.41
438_T522_M0.7900.41
118_T696_H0.7900.41
45_G157_E0.7890.41
99_L108_L0.7870.41
134_V604_L0.7870.41
758_H764_A0.7870.41
34_P255_H0.7850.41
342_N700_L0.7830.41
477_N726_K0.7810.41
164_V692_T0.7800.41
279_A725_L0.7780.40
448_E662_S0.7740.40
125_Q349_R0.7740.40
251_A516_F0.7730.40
413_V618_V0.7730.40
23_L135_T0.7720.40
335_I409_I0.7720.40
303_D618_V0.7720.40
351_L392_V0.7720.40
339_V409_I0.7720.40
96_R134_V0.7710.40
573_G618_V0.7710.40
422_W462_D0.7710.40
225_N779_G0.7690.40
684_D689_L0.7690.40
697_V767_S0.7680.40
63_M132_V0.7680.40
472_Q476_A0.7680.40
33_E389_E0.7680.40
648_G688_V0.7670.40
139_T325_S0.7670.40
557_V562_A0.7660.40
411_G478_L0.7650.39
40_P154_A0.7640.39
224_S234_A0.7630.39
60_E63_M0.7610.39
139_T549_S0.7610.39
207_A688_V0.7600.39
303_D542_D0.7600.39
300_L336_D0.7600.39
154_A774_Q0.7600.39
488_E534_Q0.7600.39
45_G745_G0.7600.39
184_V189_R0.7590.39
380_A545_G0.7590.39
47_N184_V0.7590.39
625_V781_E0.7580.39
460_D750_E0.7580.39
21_N440_E0.7570.39
428_I439_E0.7560.39
117_T130_P0.7560.39
339_V626_V0.7550.39
349_R379_E0.7550.39
160_V208_F0.7540.39
701_L704_S0.7530.39
179_G408_Q0.7530.39
336_D425_Y0.7530.39
199_V270_L0.7530.39
44_D775_S0.7520.38
418_E463_T0.7510.38
440_E573_G0.7500.38
476_A609_R0.7500.38
169_G348_K0.7490.38
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539_P542_D0.5010.22
84_Y102_W0.5010.22
139_T560_A0.5010.22
491_D494_G0.5010.22
88_L94_D0.5000.22
327_E419_T0.5000.22
25_E43_A0.5000.22
557_V669_P0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2va8A 1 0.6681 100 0.794 Contact Map
2p6rA 1 0.6512 100 0.796 Contact Map
2zj8A 2 0.6638 100 0.797 Contact Map
4f92B 1 0.7072 100 0.801 Contact Map
4bgdA 1 0.926 100 0.814 Contact Map
5agaA 4 0.6945 100 0.815 Contact Map
4u4cA 1 0.8066 100 0.823 Contact Map
4w7sA 2 0.4228 100 0.824 Contact Map
4d25A 1 0.3996 100 0.824 Contact Map
4c9bA 1 0.3953 100 0.825 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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