PHR - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

PHR - Deoxyribodipyrimidine photo-lyase

UniProt:	Q9HQ46	Sequences: MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVLYFNQNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIAMFERARGDE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	481 (415)
Sequences:	5446 (4246)
Seq/√Len:	208.4

ECOLI - PHR
HALSA - PHR Q9HP89
SULSO - Q97VY1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
317_D	320_A	4.587	1.00
246_H	251_T	4.091	1.00
333_I	354_I	3.894	1.00
322_Q	326_D	3.810	1.00
342_R	373_W	3.591	1.00
321_L	325_K	3.544	1.00
321_L	369_A	3.501	1.00
304_N	310_H	3.221	1.00
339_R	429_E	3.134	1.00
216_L	257_V	3.094	1.00
67_R	71_R	2.967	1.00
337_G	351_V	2.830	1.00
101_V	131_F	2.817	1.00
413_G	423_I	2.811	1.00
62_A	251_T	2.704	1.00
99_R	129_A	2.560	1.00
82_G	87_V	2.518	1.00
102_W	128_H	2.510	1.00
102_W	130_Q	2.482	1.00
342_R	377_K	2.479	1.00
67_R	76_D	2.477	1.00
13_T	256_T	2.470	1.00
279_A	282_G	2.469	1.00
65_A	210_A	2.420	1.00
100_V	121_L	2.394	1.00
331_Y	358_F	2.383	1.00
87_V	90_A	2.316	1.00
15_N	103_N	2.297	1.00
209_T	256_T	2.267	1.00
6_H	39_A	2.241	1.00
340_Q	344_E	2.241	1.00
290_Y	389_G	2.238	1.00
351_V	422_Y	2.208	1.00
315_R	320_A	2.189	1.00
209_T	213_R	2.188	1.00
217_D	260_A	2.137	1.00
411_T	415_R	2.137	1.00
4_F	17_G	2.126	1.00
330_G	335_D	2.076	1.00
213_R	256_T	2.061	1.00
343_A	426_F	2.061	1.00
4_F	15_N	2.049	1.00
99_R	127_A	2.029	1.00
62_A	208_G	2.022	1.00
83_D	86_A	2.015	1.00
59_M	249_F	1.991	1.00
90_A	94_D	1.975	1.00
344_E	426_F	1.970	1.00
211_A	214_S	1.953	1.00
373_W	377_K	1.945	1.00
371_Y	387_N	1.897	1.00
260_A	263_A	1.895	1.00
89_P	124_A	1.888	1.00
241_S	280_F	1.867	1.00
322_Q	325_K	1.865	1.00
216_L	260_A	1.856	1.00
410_M	413_G	1.830	1.00
69_R	209_T	1.810	1.00
339_R	427_V	1.795	1.00
408_N	412_Q	1.780	1.00
58_F	246_H	1.767	1.00
157_W	285_A	1.739	1.00
92_A	97_A	1.737	1.00
227_R	231_R	1.735	1.00
80_R	94_D	1.717	1.00
58_F	249_F	1.716	1.00
80_R	87_V	1.705	1.00
290_Y	388_G	1.703	1.00
6_H	70_Y	1.679	1.00
212_A	252_I	1.663	1.00
85_A	116_G	1.654	1.00
340_Q	422_Y	1.648	1.00
85_A	89_P	1.646	1.00
359_L	365_V	1.640	1.00
235_P	351_V	1.638	1.00
325_K	376_E	1.633	1.00
220_R	225_I	1.632	1.00
39_A	75_S	1.627	1.00
258_Y	281_I	1.625	1.00
356_A	393_A	1.624	1.00
156_F	292_Q	1.603	1.00
332_P	336_A	1.600	1.00
366_D	369_A	1.599	1.00
247_L	257_V	1.590	1.00
256_T	260_A	1.588	1.00
19_A	23_P	1.586	1.00
157_W	282_G	1.585	1.00
261_A	277_V	1.561	1.00
118_R	130_Q	1.553	1.00
375_R	381_H	1.546	1.00
331_Y	362_D	1.543	1.00
65_A	69_R	1.539	1.00
234_Y	237_E	1.535	1.00
70_Y	75_S	1.530	1.00
323_A	328_E	1.521	1.00
69_R	210_A	1.519	1.00
71_R	76_D	1.516	1.00
153_Y	282_G	1.510	1.00
13_T	213_R	1.509	1.00
40_V	91_V	1.498	1.00
243_L	280_F	1.465	1.00
8_R	105_D	1.461	1.00
218_A	222_S	1.454	1.00
40_V	88_L	1.448	1.00
61_D	207_A	1.433	1.00
261_A	280_F	1.432	1.00
293_V	398_T	1.429	1.00
20_A	23_P	1.427	1.00
359_L	370_G	1.420	1.00
369_A	372_D	1.409	1.00
3_L	97_A	1.402	1.00
229_E	279_A	1.398	1.00
107_S	110_A	1.398	1.00
261_A	281_I	1.390	1.00
57_A	61_D	1.385	1.00
16_R	133_D	1.383	1.00
44_D	47_V	1.381	1.00
93_N	124_A	1.358	1.00
134_A	291_A	1.350	1.00
111_T	295_Y	1.349	1.00
40_V	80_R	1.342	1.00
337_G	422_Y	1.337	1.00
420_A	424_T	1.334	1.00
316_D	369_A	1.324	1.00
303_E	310_H	1.318	1.00
41_F	59_M	1.314	1.00
160_W	285_A	1.311	1.00
6_H	66_L	1.309	1.00
231_R	237_E	1.308	1.00
194_E	197_F	1.295	1.00
91_V	95_L	1.289	1.00
92_A	126_V	1.287	1.00
157_W	161_Q	1.281	1.00
132_H	138_R	1.278	1.00
421_D	424_T	1.273	1.00
279_A	283_Q	1.272	1.00
300_V	387_N	1.272	1.00
260_A	264_A	1.271	1.00
299_N	303_E	1.267	1.00
321_L	365_V	1.267	1.00
7_R	114_D	1.260	1.00
231_R	239_P	1.259	1.00
283_Q	385_N	1.256	1.00
243_L	257_V	1.255	1.00
174_P	177_L	1.248	1.00
105_D	110_A	1.244	1.00
42_C	88_L	1.242	1.00
100_V	128_H	1.232	1.00
255_R	259_E	1.228	1.00
370_G	390_W	1.223	1.00
208_G	211_A	1.221	1.00
333_I	413_G	1.209	1.00
137_H	160_W	1.208	1.00
325_K	373_W	1.200	1.00
340_Q	346_Y	1.198	1.00
383_T	387_N	1.197	1.00
45_D	81_H	1.196	1.00
41_F	63_L	1.194	1.00
86_A	90_A	1.187	1.00
38_A	78_I	1.173	1.00
341_L	378_L	1.171	1.00
208_G	251_T	1.164	1.00
232_R	283_Q	1.161	1.00
411_T	414_E	1.160	1.00
263_A	267_D	1.155	1.00
5_W	117_V	1.151	1.00
227_R	230_D	1.147	1.00
111_T	115_A	1.144	1.00
334_V	354_I	1.139	1.00
115_A	118_R	1.132	1.00
107_S	383_T	1.132	1.00
262_R	281_I	1.131	1.00
294_L	384_A	1.126	1.00
58_F	245_P	1.120	1.00
389_G	393_A	1.118	1.00
69_R	73_L	1.116	1.00
318_P	369_A	1.096	1.00
42_C	87_V	1.094	1.00
13_T	209_T	1.092	1.00
12_T	73_L	1.087	1.00
60_L	64_A	1.084	1.00
258_Y	285_A	1.082	1.00
334_V	338_M	1.081	1.00
242_R	346_Y	1.072	1.00
227_R	276_N	1.071	1.00
112_D	116_G	1.068	1.00
89_P	93_N	1.065	1.00
321_L	359_L	1.061	1.00
197_F	201_E	1.054	1.00
92_A	95_L	1.049	1.00
208_G	212_A	1.046	1.00
324_W	338_M	1.040	1.00
54_P	377_K	1.040	1.00
136_H	160_W	1.032	1.00
198_A	201_E	1.025	1.00
220_R	261_A	1.024	1.00
285_A	288_E	1.020	1.00
92_A	100_V	1.016	1.00
408_N	411_T	1.004	1.00
207_A	211_A	1.002	1.00
218_A	224_D	1.000	1.00
316_D	320_A	0.998	1.00
319_A	323_A	0.990	1.00
89_P	92_A	0.990	1.00
240_T	346_Y	0.989	1.00
65_A	207_A	0.989	1.00
319_A	369_A	0.988	1.00
330_G	421_D	0.987	1.00
413_G	420_A	0.985	1.00
103_N	133_D	0.984	1.00
217_D	221_E	0.979	1.00
180_D	183_L	0.978	1.00
257_V	280_F	0.977	1.00
115_A	119_D	0.976	1.00
405_R	408_N	0.971	1.00
238_E	242_R	0.969	1.00
89_P	120_A	0.967	1.00
110_A	113_R	0.967	1.00
78_I	91_V	0.965	1.00
43_F	48_L	0.964	1.00
20_A	131_F	0.963	1.00
22_A	37_V	0.962	1.00
51_A	55_R	0.960	1.00
80_R	90_A	0.959	1.00
38_A	95_L	0.955	1.00
148_D	151_S	0.952	0.99
3_L	92_A	0.948	0.99
339_R	343_A	0.948	0.99
405_R	412_Q	0.946	0.99
206_D	211_A	0.941	0.99
108_G	112_D	0.938	0.99
84_P	89_P	0.938	0.99
226_Y	264_A	0.937	0.99
135_V	291_A	0.935	0.99
64_A	68_E	0.935	0.99
423_I	427_V	0.933	0.99
283_Q	353_M	0.926	0.99
104_H	132_H	0.921	0.99
197_F	200_P	0.920	0.99
220_R	264_A	0.915	0.99
54_P	205_P	0.914	0.99
68_E	72_D	0.909	0.99
42_C	84_P	0.907	0.99
102_W	118_R	0.907	0.99
92_A	121_L	0.907	0.99
33_D	36_P	0.902	0.99
187_S	192_V	0.898	0.99
69_R	72_D	0.894	0.99
58_F	251_T	0.894	0.99
214_S	218_A	0.893	0.99
196_G	199_E	0.890	0.99
291_A	385_N	0.890	0.99
82_G	86_A	0.889	0.99
58_F	208_G	0.889	0.99
117_V	121_L	0.888	0.99
229_E	276_N	0.883	0.99
105_D	113_R	0.882	0.99
137_H	142_I	0.879	0.99
46_E	83_D	0.877	0.99
220_R	260_A	0.875	0.99
410_M	414_E	0.872	0.99
307_A	310_H	0.871	0.99
38_A	97_A	0.871	0.99
325_K	369_A	0.862	0.99
58_F	62_A	0.858	0.99
327_G	338_M	0.856	0.99
70_Y	77_L	0.852	0.99
400_A	404_F	0.852	0.99
356_A	374_F	0.850	0.99
148_D	400_A	0.849	0.99
340_Q	426_F	0.845	0.99
144_T	148_D	0.844	0.99
5_W	84_P	0.837	0.99
14_D	255_R	0.834	0.99
407_F	412_Q	0.833	0.99
143_R	296_F	0.830	0.99
211_A	215_L	0.827	0.99
104_H	130_Q	0.826	0.99
396_T	401_Q	0.826	0.99
43_F	79_V	0.825	0.99
335_D	339_R	0.824	0.99
332_P	335_D	0.822	0.99
365_V	369_A	0.821	0.98
350_R	412_Q	0.821	0.98
304_N	309_E	0.821	0.98
401_Q	404_F	0.817	0.98
106_Y	135_V	0.817	0.98
159_K	162_D	0.816	0.98
243_L	252_I	0.815	0.98
245_P	379_A	0.814	0.98
153_Y	156_F	0.812	0.98
104_H	138_R	0.807	0.98
205_P	379_A	0.803	0.98
101_V	129_A	0.800	0.98
225_I	261_A	0.796	0.98
61_D	65_A	0.794	0.98
167_P	170_P	0.794	0.98
252_I	257_V	0.792	0.98
328_E	427_V	0.792	0.98
172_P	175_A	0.792	0.98
88_L	92_A	0.791	0.98
42_C	82_G	0.784	0.98
16_R	20_A	0.784	0.98
140_G	296_F	0.784	0.98
196_G	200_P	0.784	0.98
186_T	192_V	0.784	0.98
233_D	283_Q	0.783	0.98
161_Q	278_A	0.783	0.98
167_P	171_E	0.783	0.98
194_E	200_P	0.782	0.98
164_E	167_P	0.782	0.98
331_Y	410_M	0.779	0.98
161_Q	285_A	0.776	0.98
374_F	386_D	0.776	0.98
137_H	285_A	0.775	0.98
282_G	286_W	0.774	0.98
58_F	207_A	0.774	0.98
196_G	201_E	0.769	0.98
413_G	430_L	0.769	0.98
205_P	242_R	0.768	0.98
51_A	56_V	0.767	0.98
43_F	63_L	0.767	0.98
168_P	171_E	0.765	0.98
205_P	245_P	0.765	0.98
138_R	141_E	0.763	0.98
83_D	116_G	0.761	0.98
304_N	396_T	0.757	0.97
341_L	347_M	0.756	0.97
326_D	342_R	0.754	0.97
264_A	268_A	0.752	0.97
4_F	39_A	0.752	0.97
324_W	360_T	0.748	0.97
301_V	383_T	0.748	0.97
297_N	305_F	0.747	0.97
65_A	68_E	0.745	0.97
121_L	126_V	0.743	0.97
78_I	95_L	0.740	0.97
300_V	305_F	0.740	0.97
121_L	128_H	0.739	0.97
310_H	368_R	0.737	0.97
65_A	251_T	0.736	0.97
78_I	94_D	0.735	0.97
213_R	217_D	0.734	0.97
192_V	200_P	0.734	0.97
278_A	282_G	0.732	0.97
316_D	365_V	0.728	0.97
332_P	423_I	0.726	0.97
216_L	220_R	0.723	0.97
194_E	198_A	0.723	0.97
340_Q	343_A	0.721	0.97
3_L	91_V	0.719	0.97
245_P	346_Y	0.719	0.97
43_F	81_H	0.719	0.97
153_Y	157_W	0.717	0.96
265_K	277_V	0.716	0.96
304_N	307_A	0.715	0.96
306_K	309_E	0.714	0.96
195_L	198_A	0.712	0.96
145_N	159_K	0.711	0.96
191_S	194_E	0.711	0.96
88_L	91_V	0.705	0.96
371_Y	390_W	0.705	0.96
4_F	101_V	0.703	0.96
216_L	252_I	0.703	0.96
258_Y	284_L	0.702	0.96
265_K	278_A	0.702	0.96
187_S	190_P	0.702	0.96
19_A	171_E	0.701	0.96
175_A	178_A	0.699	0.96
20_A	129_A	0.699	0.96
135_V	139_P	0.699	0.96
339_R	342_R	0.698	0.96
136_H	258_Y	0.689	0.96
22_A	177_L	0.688	0.96
422_Y	426_F	0.688	0.96
191_S	197_F	0.688	0.96
80_R	91_V	0.686	0.95
106_Y	138_R	0.686	0.95
119_D	123_A	0.685	0.95
392_W	405_R	0.684	0.95
225_I	277_V	0.682	0.95
265_K	274_R	0.682	0.95
235_P	333_I	0.682	0.95
12_T	70_Y	0.682	0.95
54_P	57_A	0.682	0.95
168_P	255_R	0.681	0.95
6_H	12_T	0.681	0.95
155_Y	158_R	0.681	0.95
181_T	184_A	0.678	0.95
345_A	379_A	0.677	0.95
293_V	300_V	0.676	0.95
112_D	115_A	0.674	0.95
282_G	285_A	0.674	0.95
193_Q	196_G	0.672	0.95
19_A	22_A	0.671	0.95
291_A	382_D	0.669	0.95
141_E	159_K	0.668	0.95
290_Y	398_T	0.668	0.95
385_N	389_G	0.668	0.95
5_W	102_W	0.663	0.95
292_Q	296_F	0.660	0.94
168_P	172_P	0.658	0.94
118_R	122_D	0.656	0.94
193_Q	201_E	0.652	0.94
417_D	420_A	0.651	0.94
109_L	113_R	0.649	0.94
20_A	101_V	0.648	0.94
65_A	208_G	0.648	0.94
209_T	212_A	0.647	0.94
386_D	390_W	0.646	0.94
338_M	355_V	0.646	0.94
368_R	371_Y	0.645	0.94
215_L	242_R	0.643	0.94
164_E	171_E	0.642	0.94
215_L	224_D	0.642	0.94
140_G	295_Y	0.640	0.93
240_T	348_H	0.639	0.93
230_D	233_D	0.638	0.93
333_I	351_V	0.636	0.93
327_G	335_D	0.635	0.93
382_D	385_N	0.635	0.93
236_H	340_Q	0.634	0.93
356_A	386_D	0.633	0.93
132_H	135_V	0.632	0.93
169_A	174_P	0.631	0.93
114_D	118_R	0.631	0.93
195_L	200_P	0.631	0.93
324_W	356_A	0.630	0.93
328_E	429_E	0.630	0.93
39_A	42_C	0.628	0.93
190_P	194_E	0.625	0.93
105_D	248_K	0.625	0.93
192_V	195_L	0.625	0.93
43_F	60_L	0.624	0.93
277_V	281_I	0.622	0.92
261_A	264_A	0.622	0.92
190_P	195_L	0.621	0.92
391_Q	405_R	0.619	0.92
3_L	40_V	0.619	0.92
17_G	103_N	0.618	0.92
253_G	256_T	0.617	0.92
109_L	112_D	0.617	0.92
41_F	47_V	0.615	0.92
350_R	405_R	0.614	0.92
190_P	196_G	0.613	0.92
62_A	207_A	0.613	0.92
337_G	347_M	0.613	0.92
290_Y	293_V	0.612	0.92
192_V	197_F	0.612	0.92
118_R	140_G	0.612	0.92
399_D	405_R	0.612	0.92
44_D	84_P	0.611	0.92
21_A	101_V	0.609	0.92
241_S	244_S	0.608	0.92
361_K	405_R	0.608	0.92
71_R	75_S	0.607	0.92
100_V	117_V	0.607	0.92
189_L	192_V	0.606	0.91
236_H	239_P	0.606	0.91
136_H	140_G	0.605	0.91
151_S	297_N	0.604	0.91
156_F	160_W	0.603	0.91
229_E	233_D	0.603	0.91
230_D	276_N	0.602	0.91
156_F	288_E	0.599	0.91
171_E	174_P	0.599	0.91
294_L	301_V	0.598	0.91
168_P	174_P	0.597	0.91
281_I	285_A	0.596	0.91
316_D	321_L	0.596	0.91
286_W	388_G	0.595	0.91
327_G	427_V	0.594	0.91
257_V	260_A	0.593	0.91
207_A	212_A	0.591	0.90
225_I	276_N	0.590	0.90
3_L	88_L	0.590	0.90
361_K	399_D	0.590	0.90
173_E	177_L	0.589	0.90
391_Q	396_T	0.589	0.90
347_M	378_L	0.589	0.90
176_D	181_T	0.589	0.90
177_L	180_D	0.588	0.90
3_L	95_L	0.587	0.90
170_P	259_E	0.587	0.90
84_P	113_R	0.587	0.90
219_F	241_S	0.586	0.90
353_M	407_F	0.585	0.90
357_A	393_A	0.585	0.90
137_H	141_E	0.584	0.90
224_D	238_E	0.584	0.90
356_A	360_T	0.582	0.90
320_A	365_V	0.582	0.90
90_A	93_N	0.581	0.90
42_C	92_A	0.581	0.90
347_M	374_F	0.580	0.90
324_W	365_V	0.578	0.89
86_A	89_P	0.578	0.89
303_E	307_A	0.577	0.89
314_W	317_D	0.577	0.89
155_Y	159_K	0.576	0.89
392_W	397_G	0.575	0.89
315_R	364_L	0.575	0.89
57_A	207_A	0.574	0.89
289_F	398_T	0.574	0.89
403_Y	406_V	0.573	0.89
67_R	77_L	0.572	0.89
371_Y	375_R	0.572	0.89
170_P	173_E	0.571	0.89
55_R	248_K	0.570	0.89
221_E	264_A	0.570	0.89
161_Q	282_G	0.569	0.89
5_W	88_L	0.568	0.89
143_R	147_G	0.568	0.89
170_P	174_P	0.566	0.89
353_M	416_Y	0.565	0.88
173_E	176_D	0.565	0.88
88_L	95_L	0.563	0.88
118_R	128_H	0.563	0.88
176_D	179_A	0.563	0.88
35_G	98_T	0.562	0.88
204_V	242_R	0.562	0.88
283_Q	349_N	0.560	0.88
375_R	383_T	0.560	0.88
392_W	399_D	0.557	0.88
133_D	255_R	0.556	0.88
63_L	67_R	0.555	0.88
108_G	383_T	0.555	0.88
132_H	137_H	0.555	0.88
23_P	33_D	0.555	0.88
279_A	354_I	0.554	0.87
92_A	120_A	0.554	0.87
79_V	189_L	0.553	0.87
332_P	430_L	0.553	0.87
134_A	137_H	0.553	0.87
349_N	353_M	0.552	0.87
117_V	120_A	0.552	0.87
12_T	209_T	0.551	0.87
195_L	201_E	0.551	0.87
389_G	400_A	0.550	0.87
54_P	379_A	0.550	0.87
361_K	404_F	0.548	0.87
232_R	353_M	0.548	0.87
183_L	230_D	0.547	0.87
283_Q	286_W	0.547	0.87
336_A	340_Q	0.546	0.87
406_V	409_P	0.544	0.86
243_L	247_L	0.544	0.86
84_P	87_V	0.542	0.86
399_D	402_P	0.541	0.86
122_D	125_G	0.541	0.86
61_D	206_D	0.540	0.86
232_R	349_N	0.539	0.86
136_H	139_P	0.538	0.86
274_R	277_V	0.538	0.86
191_S	195_L	0.538	0.86
370_G	391_Q	0.537	0.86
68_E	210_A	0.537	0.86
407_F	411_T	0.536	0.86
324_W	374_F	0.535	0.86
75_S	177_L	0.535	0.86
159_K	163_R	0.534	0.85
317_D	369_A	0.533	0.85
6_H	10_L	0.531	0.85
145_N	150_Y	0.530	0.85
192_V	196_G	0.530	0.85
231_R	234_Y	0.529	0.85
39_A	70_Y	0.527	0.85
337_G	355_V	0.527	0.85
180_D	184_A	0.525	0.85
286_W	349_N	0.525	0.85
347_M	355_V	0.523	0.84
410_M	430_L	0.523	0.84
82_G	90_A	0.522	0.84
44_D	48_L	0.522	0.84
22_A	178_A	0.521	0.84
420_A	430_L	0.521	0.84
387_N	398_T	0.520	0.84
105_D	108_G	0.520	0.84
256_T	259_E	0.520	0.84
390_W	397_G	0.520	0.84
92_A	124_A	0.520	0.84
331_Y	413_G	0.520	0.84
153_Y	289_F	0.520	0.84
340_Q	347_M	0.519	0.84
4_F	18_L	0.519	0.84
358_F	361_K	0.517	0.84
97_A	126_V	0.517	0.84
146_A	151_S	0.517	0.84
291_A	384_A	0.516	0.84
305_F	309_E	0.516	0.84
4_F	21_A	0.516	0.84
174_P	180_D	0.515	0.83
104_H	140_G	0.515	0.83
135_V	140_G	0.515	0.83
338_M	341_L	0.514	0.83
102_W	114_D	0.514	0.83
234_Y	239_P	0.514	0.83
226_Y	268_A	0.514	0.83
342_R	376_E	0.513	0.83
122_D	127_A	0.512	0.83
394_A	399_D	0.511	0.83
318_P	322_Q	0.508	0.83
358_F	363_L	0.507	0.82
424_T	430_L	0.507	0.82
235_P	425_E	0.506	0.82
145_N	148_D	0.506	0.82
178_A	181_T	0.505	0.82
104_H	139_P	0.505	0.82
68_E	71_R	0.505	0.82
132_H	139_P	0.505	0.82
194_E	199_E	0.504	0.82
89_P	123_A	0.504	0.82
150_Y	153_Y	0.503	0.82
64_A	67_R	0.503	0.82
135_V	292_Q	0.502	0.82
304_N	366_D	0.502	0.82
349_N	412_Q	0.501	0.82
19_A	172_P	0.501	0.82
206_D	246_H	0.500	0.82
258_Y	262_R	0.500	0.82
106_Y	139_P	0.500	0.82
177_L	181_T	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4u63A	1	0.9584	100	0.072	Contact Map
1owlA	1	0.9626	100	0.077	Contact Map
3fy4A	1	0.973	100	0.078	Contact Map
1np7A	1	0.9543	100	0.082	Contact Map
1u3dA	1	0.9667	100	0.082	Contact Map
4gu5A	1	0.9854	100	0.088	Contact Map
1dnpA	1	0.9501	100	0.092	Contact Map
4k0rA	1	0.9293	100	0.095	Contact Map
4mlpC	1	0.9709	100	0.096	Contact Map
2wq7A	1	0.9771	100	0.107	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.