GREMLIN Database
RAD25 - Putative DNA helicase Rad25
UniProt: Q9HPZ2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 600 (501)
Sequences: 5949 (5030)
Seq/√Len: 224.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
366_A369_S3.3151.00
365_V369_S3.1741.00
168_D171_Y3.1411.00
304_L328_V2.9361.00
468_T532_E2.9131.00
277_M304_L2.7071.00
367_R370_A2.6211.00
238_A241_L2.5801.00
160_T163_R2.4871.00
515_A518_V2.4601.00
80_P84_E2.2931.00
462_V470_A2.2841.00
358_V379_G2.2681.00
405_D408_A2.1421.00
138_T141_L2.1141.00
192_D195_L2.0731.00
80_P83_R2.0521.00
365_V370_A2.0331.00
85_I89_Q2.0031.00
99_S102_A1.9781.00
133_L137_I1.9711.00
83_R87_V1.9681.00
481_E491_F1.9561.00
228_D231_L1.9561.00
70_L73_R1.9481.00
76_I79_F1.9441.00
221_A224_P1.9411.00
74_E78_P1.9351.00
252_W275_A1.9271.00
214_L218_L1.9141.00
182_L186_A1.9111.00
178_T182_L1.8901.00
237_L240_D1.8691.00
194_V197_A1.8561.00
222_G228_D1.8181.00
141_L144_D1.8171.00
58_D62_W1.8161.00
64_P67_W1.8111.00
183_G186_A1.8071.00
76_I80_P1.8051.00
60_V64_P1.8001.00
302_E506_D1.7911.00
77_V80_P1.7871.00
62_W66_D1.7761.00
568_T571_T1.7761.00
94_T97_Q1.7751.00
66_D70_L1.7661.00
222_G225_V1.7611.00
165_R168_D1.7561.00
211_V218_L1.7561.00
193_D196_R1.7521.00
218_L222_G1.7501.00
366_A370_A1.7491.00
97_Q100_R1.7461.00
124_A127_F1.7381.00
320_G325_V1.7361.00
66_D69_E1.7211.00
73_R76_I1.7201.00
218_L221_A1.7121.00
63_Y66_D1.7111.00
104_L107_T1.7071.00
81_D84_E1.7001.00
534_A554_T1.6901.00
177_A180_S1.6831.00
497_P500_R1.6671.00
367_R371_S1.6641.00
79_F83_R1.6481.00
71_T74_E1.6461.00
62_W65_R1.6451.00
131_S134_V1.6451.00
67_W70_L1.6421.00
118_R122_V1.6231.00
105_T108_T1.6201.00
222_G226_R1.6131.00
98_L102_A1.6101.00
318_Y341_H1.6011.00
57_P61_V1.5871.00
116_E119_A1.5741.00
472_V535_V1.5701.00
459_E486_R1.5681.00
178_T181_L1.5651.00
67_W71_T1.5631.00
474_V480_G1.5541.00
93_L96_A1.5531.00
137_I140_L1.5511.00
63_Y67_W1.5501.00
214_L217_T1.5471.00
64_P68_L1.5421.00
458_I462_V1.5411.00
221_A225_V1.5251.00
210_Q214_L1.5251.00
222_G227_D1.5221.00
193_D197_A1.5211.00
73_R77_V1.5091.00
94_T98_L1.5041.00
514_D518_V1.4991.00
296_L525_G1.4981.00
82_R86_I1.4981.00
122_V125_A1.4971.00
65_R68_L1.4921.00
87_V91_S1.4881.00
211_V214_L1.4771.00
83_R86_I1.4771.00
166_T169_D1.4681.00
74_E77_V1.4651.00
132_D135_A1.4641.00
100_R104_L1.4621.00
490_P507_Q1.4611.00
167_H170_G1.4511.00
191_D194_V1.4511.00
137_I142_P1.4511.00
59_P62_W1.4491.00
78_P81_D1.4471.00
72_D78_P1.4461.00
134_V138_T1.4371.00
72_D76_I1.4351.00
58_D61_V1.4311.00
63_Y68_L1.4291.00
81_D85_I1.4271.00
158_R161_R1.4191.00
61_V64_P1.4131.00
181_L184_N1.4111.00
176_A179_D1.4061.00
96_A100_R1.4041.00
79_F82_R1.4021.00
474_V483_I1.3981.00
72_D75_R1.3971.00
166_T170_G1.3941.00
152_V155_Q1.3791.00
93_L97_Q1.3761.00
61_V65_R1.3711.00
75_R79_F1.3701.00
65_R69_E1.3661.00
60_V63_Y1.3641.00
219_Y225_V1.3601.00
223_Y226_R1.3581.00
155_Q158_R1.3571.00
141_L145_C1.3551.00
359_H524_E1.3551.00
172_V176_A1.3531.00
120_E123_W1.3531.00
148_L151_W1.3501.00
96_A101_V1.3501.00
484_A489_A1.3501.00
98_L101_V1.3491.00
71_T75_R1.3451.00
228_D233_S1.3411.00
132_D136_A1.3381.00
142_P145_C1.3341.00
490_P504_H1.3211.00
149_I152_V1.3211.00
122_V127_F1.3151.00
417_E422_I1.3151.00
139_E142_P1.3141.00
75_R78_P1.3121.00
229_R234_G1.3091.00
83_R88_D1.3061.00
78_P82_R1.3021.00
171_Y174_L1.2981.00
121_D124_A1.2981.00
118_R121_D1.2941.00
102_A105_T1.2891.00
423_R426_P1.2891.00
226_R231_L1.2871.00
212_A217_T1.2851.00
174_L177_A1.2831.00
124_A128_D1.2741.00
217_T221_A1.2731.00
319_H322_E1.2731.00
161_R164_L1.2691.00
217_T220_E1.2651.00
428_R445_R1.2641.00
90_P93_L1.2631.00
483_I537_A1.2611.00
116_E120_E1.2541.00
509_R530_D1.2521.00
406_W409_L1.2511.00
211_V219_Y1.2511.00
142_P146_P1.2491.00
232_E235_E1.2461.00
218_L223_Y1.2461.00
130_L133_L1.2451.00
159_A164_L1.2431.00
64_P70_L1.2431.00
301_R305_L1.2421.00
227_D231_L1.2411.00
71_T77_V1.2401.00
173_V176_A1.2381.00
82_R85_I1.2341.00
85_I88_D1.2241.00
169_D172_V1.2161.00
216_R219_Y1.2141.00
182_L185_V1.2131.00
98_L105_T1.2101.00
84_E87_V1.2091.00
69_E75_R1.2061.00
113_Y116_E1.2041.00
238_A242_H1.2021.00
219_Y223_Y1.1981.00
170_G174_L1.1961.00
206_V209_E1.1931.00
193_D198_P1.1871.00
78_P84_E1.1871.00
204_A207_A1.1821.00
457_E461_L1.1811.00
297_A330_I1.1811.00
99_S103_H1.1791.00
477_L495_E1.1791.00
173_V182_L1.1761.00
86_I89_Q1.1751.00
173_V177_A1.1731.00
533_F564_F1.1731.00
188_Q191_D1.1721.00
190_L193_D1.1661.00
219_Y222_G1.1631.00
60_V68_L1.1611.00
66_D75_R1.1601.00
149_I153_R1.1551.00
280_L287_T1.1551.00
257_E282_S1.1531.00
148_L152_V1.1501.00
156_W160_T1.1501.00
96_A99_S1.1491.00
69_E73_R1.1481.00
230_D233_S1.1471.00
137_I146_P1.1451.00
175_E178_T1.1441.00
503_T507_Q1.1391.00
136_A139_E1.1371.00
130_L134_V1.1371.00
213_P225_V1.1341.00
174_L178_T1.1291.00
154_E158_R1.1281.00
176_A180_S1.1271.00
92_Q97_Q1.1251.00
69_E77_V1.1241.00
150_E153_R1.1221.00
194_V198_P1.1211.00
413_G418_P1.1201.00
213_P218_L1.1191.00
222_G229_R1.1191.00
93_L98_L1.1121.00
419_E422_I1.1111.00
85_I90_P1.1081.00
125_A128_D1.1071.00
122_V128_D1.1061.00
121_D126_P1.1061.00
231_L234_G1.1061.00
317_E320_G1.1061.00
77_V81_D1.1041.00
461_L564_F1.1031.00
115_Y126_P1.1001.00
421_E424_Y1.0961.00
68_L71_T1.0951.00
133_L136_A1.0951.00
237_L242_H1.0951.00
138_T145_C1.0921.00
95_R101_V1.0911.00
224_P227_D1.0851.00
114_R118_R1.0781.00
195_L198_P1.0701.00
405_D409_L1.0691.00
214_L222_G1.0671.00
153_R156_W1.0651.00
225_V228_D1.0631.00
147_T150_E1.0631.00
536_V539_G1.0591.00
457_E460_H1.0551.00
147_T152_V1.0551.00
551_A563_L1.0531.00
73_R80_P1.0521.00
159_A162_F1.0521.00
418_P421_E1.0511.00
175_E181_L1.0511.00
214_L219_Y1.0431.00
203_E206_V1.0391.00
79_F89_Q1.0361.00
136_A140_L1.0351.00
104_L108_T1.0341.00
61_V66_D1.0321.00
59_P67_W1.0311.00
170_G173_V1.0311.00
137_I145_C1.0291.00
191_D195_L1.0291.00
60_V66_D1.0291.00
355_Y361_I1.0271.00
157_T160_T1.0221.00
88_D91_S1.0211.00
155_Q162_F1.0191.00
183_G187_E1.0181.00
303_E306_A1.0141.00
141_L146_P1.0121.00
225_V230_D1.0111.00
172_V175_E1.0061.00
101_V104_L1.0031.00
454_K461_L1.0031.00
138_T143_R1.0011.00
218_L224_P1.0001.00
414_F418_P0.9971.00
151_W155_Q0.9951.00
236_P240_D0.9941.00
97_Q103_H0.9931.00
63_Y69_E0.9911.00
176_A182_L0.9891.00
454_K462_V0.9871.00
394_I397_L0.9851.00
57_P60_V0.9841.00
175_E182_L0.9831.00
87_V90_P0.9821.00
100_R107_T0.9801.00
205_W209_E0.9791.00
137_I141_L0.9791.00
69_E72_D0.9791.00
212_A215_K0.9781.00
134_V141_L0.9741.00
74_E79_F0.9731.00
156_W159_A0.9721.00
112_S115_Y0.9711.00
114_R117_V0.9701.00
156_W161_R0.9681.00
450_E454_K0.9631.00
226_R234_G0.9631.00
413_G416_A0.9601.00
167_H171_Y0.9581.00
179_D183_G0.9521.00
112_S116_E0.9511.00
69_E81_D0.9511.00
119_A123_W0.9471.00
180_S183_G0.9451.00
227_D232_E0.9431.00
65_R73_R0.9421.00
206_V210_Q0.9401.00
274_V277_M0.9371.00
152_V158_R0.9371.00
152_V157_T0.9341.00
253_V278_G0.9331.00
136_A144_D0.9331.00
169_D173_V0.9321.00
159_A163_R0.9321.00
581_M584_L0.9321.00
116_E122_V0.9301.00
92_Q96_A0.9261.00
118_R124_A0.9241.00
209_E224_P0.9211.00
237_L241_L0.9211.00
280_L313_D0.9180.99
494_G501_R0.9180.99
223_Y227_D0.9170.99
92_Q98_L0.9170.99
207_A210_Q0.9170.99
86_I91_S0.9160.99
157_T161_R0.9130.99
96_A106_D0.9120.99
61_V71_T0.9100.99
115_Y118_R0.9100.99
198_P202_T0.9100.99
218_L228_D0.9070.99
210_Q213_P0.9070.99
136_A142_P0.9050.99
468_T533_F0.9040.99
461_L465_H0.9040.99
211_V222_G0.9020.99
114_R122_V0.8970.99
70_L76_I0.8960.99
245_L249_Q0.8940.99
117_V121_D0.8940.99
334_Q360_H0.8940.99
134_V137_I0.8920.99
217_T227_D0.8890.99
579_S582_R0.8890.99
228_D234_G0.8890.99
172_V177_A0.8870.99
119_A122_V0.8870.99
393_D397_L0.8870.99
122_V126_P0.8840.99
224_P230_D0.8830.99
215_K219_Y0.8830.99
67_W73_R0.8800.99
79_F86_I0.8780.99
81_D89_Q0.8730.99
160_T164_L0.8720.99
139_E145_C0.8680.99
97_Q101_V0.8670.99
123_W126_P0.8660.99
102_A106_D0.8610.99
140_L143_R0.8600.99
96_A104_L0.8590.99
129_S132_D0.8570.99
76_I84_E0.8560.99
207_A211_V0.8560.99
276_A354_V0.8540.99
62_W74_E0.8520.99
94_T102_A0.8520.99
117_V128_D0.8500.99
111_G114_R0.8490.99
450_E457_E0.8490.99
195_L202_T0.8470.99
204_A214_L0.8450.99
211_V223_Y0.8440.99
82_R90_P0.8440.99
130_L136_A0.8410.99
208_A215_K0.8400.99
181_L186_A0.8390.99
150_E154_E0.8370.99
135_A138_T0.8370.99
234_G238_A0.8350.99
98_L104_L0.8320.99
67_W72_D0.8280.99
134_V140_L0.8270.99
80_P88_D0.8260.99
180_S184_N0.8240.99
578_R585_S0.8230.99
78_P86_I0.8210.99
484_A491_F0.8200.99
136_A145_C0.8200.99
206_V211_V0.8200.99
155_Q161_R0.8190.99
132_D137_I0.8190.99
120_E126_P0.8180.99
181_L185_V0.8180.99
121_D125_A0.8130.99
214_L221_A0.8110.99
179_D182_L0.8110.99
188_Q193_D0.8100.99
213_P217_T0.8090.99
215_K221_A0.8080.99
68_L72_D0.8070.99
217_T222_G0.8040.99
113_Y117_V0.8040.99
474_V517_V0.8030.99
75_R82_R0.8020.99
101_V105_T0.8020.99
146_P150_E0.7980.99
191_D197_A0.7980.99
225_V229_R0.7970.99
72_D81_D0.7960.99
205_W211_V0.7960.99
222_G230_D0.7960.99
150_E155_Q0.7950.99
205_W214_L0.7940.99
95_R103_H0.7920.99
182_L187_E0.7920.99
57_P63_Y0.7910.99
167_H173_V0.7890.98
301_R330_I0.7860.98
135_A139_E0.7860.98
207_A213_P0.7850.98
139_E146_P0.7840.98
155_Q159_A0.7820.98
212_A221_A0.7820.98
154_E157_T0.7820.98
222_G231_L0.7820.98
469_Q530_D0.7810.98
148_L155_Q0.7810.98
226_R229_R0.7800.98
84_E89_Q0.7780.98
143_R151_W0.7740.98
93_L100_R0.7730.98
139_E143_R0.7730.98
211_V215_K0.7730.98
131_S135_A0.7720.98
59_P65_R0.7710.98
218_L233_S0.7700.98
220_E226_R0.7700.98
95_R98_L0.7680.98
222_G234_G0.7660.98
208_A216_R0.7660.98
581_M585_S0.7660.98
62_W70_L0.7660.98
190_L195_L0.7650.98
70_L75_R0.7640.98
67_W75_R0.7620.98
293_S334_Q0.7620.98
171_Y175_E0.7610.98
84_E88_D0.7590.98
141_L151_W0.7580.98
77_V87_V0.7570.98
130_L137_I0.7550.98
210_Q215_K0.7550.98
157_T163_R0.7550.98
96_A102_A0.7520.98
168_D184_N0.7500.98
92_Q95_R0.7500.98
219_Y228_D0.7500.98
225_V231_L0.7470.98
536_V540_L0.7470.98
115_Y119_A0.7470.98
184_N187_E0.7470.98
461_L535_V0.7460.98
221_A227_D0.7430.98
231_L235_E0.7420.98
153_R157_T0.7420.98
85_I91_S0.7400.98
147_T151_W0.7380.98
513_L516_L0.7370.98
211_V216_R0.7360.98
71_T78_P0.7360.98
154_E160_T0.7340.98
170_G178_T0.7330.98
188_Q192_D0.7310.98
204_A209_E0.7290.97
117_V120_E0.7290.97
417_E420_V0.7280.97
296_L299_Q0.7280.97
170_G175_E0.7260.97
89_Q92_Q0.7260.97
129_S133_L0.7250.97
230_D235_E0.7240.97
263_V394_I0.7210.97
70_L74_E0.7200.97
94_T105_T0.7180.97
138_T144_D0.7180.97
256_F378_L0.7170.97
190_L194_V0.7160.97
209_E214_L0.7140.97
207_A216_R0.7140.97
66_D76_I0.7140.97
70_L85_I0.7130.97
207_A219_Y0.7120.97
226_R230_D0.7110.97
94_T101_V0.7110.97
165_R169_D0.7100.97
86_I90_P0.7090.97
134_V139_E0.7080.97
102_A108_T0.7080.97
132_D139_E0.7070.97
74_E87_V0.7030.97
329_T350_W0.7020.97
103_H107_T0.7010.97
216_R228_D0.7010.97
225_V235_E0.7010.97
301_R317_E0.6970.97
171_Y185_V0.6960.97
120_E125_A0.6960.97
165_R172_V0.6960.97
208_A217_T0.6960.97
302_E306_A0.6940.97
133_L141_L0.6930.97
174_L184_N0.6920.97
118_R123_W0.6880.96
61_V67_W0.6870.96
470_A535_V0.6850.96
290_L331_A0.6840.96
214_L220_E0.6840.96
95_R99_S0.6840.96
59_P63_Y0.6830.96
418_P422_I0.6800.96
254_D258_D0.6780.96
114_R125_A0.6770.96
77_V86_I0.6770.96
216_R225_V0.6760.96
97_Q105_T0.6760.96
130_L138_T0.6760.96
151_W154_E0.6740.96
67_W77_V0.6730.96
219_Y224_P0.6720.96
138_T142_P0.6710.96
178_T183_G0.6710.96
484_A517_V0.6700.96
113_Y118_R0.6700.96
94_T99_S0.6670.96
100_R106_D0.6660.96
90_P105_T0.6650.96
58_D64_P0.6640.96
299_Q527_D0.6640.96
171_Y176_A0.6640.96
538_S541_G0.6620.96
175_E179_D0.6620.96
119_A124_A0.6620.96
226_R235_E0.6610.96
95_R104_L0.6610.96
132_D145_C0.6600.95
518_V522_G0.6590.95
283_V352_L0.6570.95
169_D175_E0.6570.95
219_Y233_S0.6570.95
76_I88_D0.6550.95
155_Q163_R0.6550.95
94_T104_L0.6540.95
236_P239_V0.6540.95
255_R262_G0.6530.95
234_G237_L0.6520.95
505_F526_I0.6510.95
81_D88_D0.6510.95
147_T156_W0.6490.95
113_Y119_A0.6480.95
217_T234_G0.6480.95
203_E219_Y0.6470.95
174_L179_D0.6460.95
205_W208_A0.6450.95
68_L77_V0.6450.95
68_L76_I0.6450.95
58_D68_L0.6440.95
532_E559_S0.6430.95
450_E461_L0.6430.95
205_W220_E0.6430.95
176_A185_V0.6420.95
74_E86_I0.6410.95
103_H108_T0.6400.95
215_K228_D0.6400.95
121_D128_D0.6380.95
150_E156_W0.6380.95
78_P89_Q0.6340.94
130_L135_A0.6330.94
61_V68_L0.6330.94
118_R127_F0.6320.94
123_W127_F0.6310.94
359_H549_Q0.6310.94
213_P219_Y0.6300.94
60_V70_L0.6300.94
211_V234_G0.6260.94
69_E76_I0.6250.94
454_K458_I0.6240.94
99_S107_T0.6220.94
168_D173_V0.6180.94
90_P100_R0.6180.94
394_I398_V0.6180.94
318_Y325_V0.6150.93
487_L514_D0.6150.93
94_T108_T0.6140.93
204_A208_A0.6130.93
217_T223_Y0.6110.93
513_L518_V0.6100.93
162_F165_R0.6090.93
213_P221_A0.6090.93
90_P94_T0.6090.93
153_R161_R0.6080.93
168_D174_L0.6080.93
206_V218_L0.6070.93
60_V90_P0.6060.93
446_R450_E0.6040.93
204_A218_L0.6020.93
214_L224_P0.6020.93
273_T300_W0.6010.93
66_D72_D0.6000.93
168_D175_E0.5970.92
291_V300_W0.5970.92
349_E373_Q0.5960.92
250_Q254_D0.5950.92
223_Y229_R0.5930.92
113_Y120_E0.5930.92
204_A224_P0.5920.92
136_A146_P0.5900.92
80_P86_I0.5900.92
144_D150_E0.5900.92
172_V178_T0.5890.92
211_V226_R0.5890.92
215_K229_R0.5890.92
203_E210_Q0.5870.92
112_S118_R0.5870.92
178_T184_N0.5860.92
239_V242_H0.5850.92
178_T186_A0.5830.92
154_E159_A0.5820.91
177_A181_L0.5810.91
368_R371_S0.5810.91
177_A184_N0.5810.91
64_P69_E0.5790.91
211_V217_T0.5770.91
157_T162_F0.5770.91
540_L547_G0.5750.91
333_Y355_Y0.5750.91
57_P64_P0.5720.91
75_R80_P0.5720.91
223_Y231_L0.5710.91
322_E325_V0.5710.91
68_L75_R0.5700.91
119_A126_P0.5700.91
173_V186_A0.5690.91
317_E321_G0.5680.90
83_R90_P0.5670.90
76_I81_D0.5670.90
530_D559_S0.5660.90
276_A279_A0.5660.90
154_E161_R0.5650.90
455_E459_E0.5630.90
224_P231_L0.5620.90
118_R133_L0.5610.90
322_E566_L0.5590.90
422_I427_W0.5580.90
69_E74_E0.5570.90
176_A183_G0.5560.89
63_Y71_T0.5550.89
68_L78_P0.5540.89
115_Y120_E0.5530.89
500_R503_T0.5520.89
209_E226_R0.5510.89
412_A416_A0.5510.89
77_V83_R0.5490.89
83_R89_Q0.5490.89
186_A190_L0.5490.89
414_F421_E0.5440.88
89_Q98_L0.5440.88
108_T121_D0.5420.88
109_R112_S0.5420.88
62_W72_D0.5420.88
203_E214_L0.5410.88
81_D87_V0.5390.88
135_A141_L0.5390.88
63_Y72_D0.5380.88
65_R71_T0.5370.88
182_L193_D0.5370.88
117_V122_V0.5370.88
296_L526_I0.5350.88
165_R173_V0.5340.88
315_I330_I0.5340.88
320_G324_R0.5330.87
219_Y230_D0.5320.87
496_T504_H0.5320.87
210_Q220_E0.5320.87
417_E421_E0.5310.87
152_V156_W0.5310.87
482_R486_R0.5310.87
208_A221_A0.5300.87
415_V419_E0.5280.87
170_G185_V0.5280.87
133_L144_D0.5260.87
171_Y182_L0.5260.87
129_S137_I0.5240.87
180_S186_A0.5240.87
317_E322_E0.5230.86
116_E123_W0.5230.86
172_V188_Q0.5210.86
205_W212_A0.5200.86
268_P382_A0.5200.86
95_R100_R0.5200.86
135_A144_D0.5180.86
94_T106_D0.5180.86
87_V99_S0.5180.86
301_R315_I0.5170.86
71_T76_I0.5150.86
228_D232_E0.5150.86
331_A336_A0.5150.86
514_D519_S0.5140.86
64_P73_R0.5130.85
553_R556_R0.5120.85
208_A214_L0.5100.85
140_L144_D0.5100.85
140_L145_C0.5090.85
236_P241_L0.5090.85
113_Y125_A0.5090.85
59_P64_P0.5090.85
244_D249_Q0.5090.85
148_L153_R0.5070.85
134_V142_P0.5060.85
150_E157_T0.5060.85
60_V71_T0.5060.85
190_L197_A0.5050.85
207_A214_L0.5050.85
129_S139_E0.5040.84
165_R171_Y0.5030.84
459_E463_D0.5000.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4pxaA 1 0.645 100 0.453 Contact Map
1z3iX 4 0.6733 100 0.454 Contact Map
3mwyW 2 0.825 100 0.461 Contact Map
4nhoA 1 0.6183 100 0.462 Contact Map
4ljyA 1 0.6367 100 0.471 Contact Map
2db3A 1 0.6333 100 0.473 Contact Map
4d25A 1 0.635 100 0.475 Contact Map
1z63A 1 0.5917 100 0.475 Contact Map
3sqwA 1 0.6033 100 0.481 Contact Map
3i5xA 1 0.6033 100 0.484 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0146 seconds.