GREMLIN Database
RS17E - 30S ribosomal protein S17e
UniProt: Q9HPX1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 59 (52)
Sequences: 101 (51)
Seq/√Len: 7.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
41_I50_I2.8320.80
20_Q38_L2.3000.64
11_T54_I2.2720.63
22_A34_A2.1860.59
19_Y29_E2.1480.58
8_V50_I1.8630.47
14_I18_R1.8490.47
24_S55_T1.7770.44
4_K46_V1.6650.40
7_Y37_E1.6620.40
19_Y38_L1.4780.33
6_D10_K1.3810.30
20_Q41_I1.3240.28
4_K27_D1.2890.27
24_S30_H1.2780.27
4_K10_K1.2460.26
34_A38_L1.2370.25
16_M54_I1.2280.25
12_G40_N1.2170.25
12_G34_A1.2100.25
44_K51_A1.2020.24
5_P46_V1.1910.24
24_S29_E1.1710.23
23_F56_H1.1280.22
19_Y55_T1.1080.22
11_T36_T1.1020.22
3_I24_S1.0960.21
19_Y35_V1.0900.21
30_H45_N1.0640.21
36_T40_N1.0490.20
5_P8_V1.0480.20
10_K30_H1.0480.20
20_Q35_V1.0420.20
10_K14_I1.0300.20
38_L41_I0.9110.17
13_N36_T0.9070.17
12_G49_R0.8980.17
11_T50_I0.8980.17
13_N21_D0.8840.16
4_K16_M0.8800.16
4_K49_R0.8800.16
23_F35_V0.8460.16
3_I6_D0.7920.15
7_Y46_V0.7880.15
24_S33_D0.7780.14
29_E56_H0.7490.14
21_D24_S0.7470.14
7_Y43_S0.7390.14
33_D36_T0.7370.14
35_V38_L0.7060.13
16_M33_D0.6900.13
3_I17_E0.6710.12
5_P36_T0.6500.12
22_A42_E0.6490.12
3_I12_G0.6320.12
3_I9_K0.6090.11
17_E34_A0.6070.11
5_P49_R0.6030.11
4_K11_T0.5910.11
43_S46_V0.5890.11
8_V14_I0.5840.11
11_T16_M0.5780.11
13_N34_A0.5740.11
8_V23_F0.5730.11
27_D36_T0.5640.11
3_I51_A0.5610.11
33_D54_I0.5590.11
16_M30_H0.5490.11
21_D27_D0.5410.10
36_T56_H0.5350.10
35_V39_T0.5350.10
15_L23_F0.5330.10
3_I54_I0.5290.10
22_A33_D0.5270.10
14_I23_F0.5130.10
34_A40_N0.5050.10
45_N50_I0.5020.10
27_D39_T0.5000.10
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j7aW 1 0.9492 99.9 0.208 Contact Map
3j60R 1 0.9831 99.9 0.209 Contact Map
4bpeV 1 0.9661 99.9 0.211 Contact Map
3j20S 1 0.9831 99.9 0.212 Contact Map
4ujpS 1 0.9661 99.9 0.214 Contact Map
1rq6A 1 0.9831 99.9 0.214 Contact Map
4w23R 1 0.9831 99.9 0.218 Contact Map
3zeyL 1 0.9661 99.9 0.219 Contact Map
1ithA 3 0.7627 12.4 0.905 Contact Map
5ak0A 2 0.9831 10 0.909 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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