GREMLIN Database
Q9HPT8 - Uncharacterized protein
UniProt: Q9HPT8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 551 (479)
Sequences: 287 (261)
Seq/√Len: 11.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
219_L270_I4.9701.00
23_I28_V3.8130.99
322_G365_V3.6640.99
295_V299_R3.4370.98
207_T359_P3.4120.98
208_G328_G3.3070.98
290_T299_R3.2010.97
320_I432_V3.0670.96
305_N339_L3.0590.96
339_L382_F3.0350.96
325_V362_S2.9730.95
326_N438_Y2.9260.95
436_L455_D2.8960.95
270_I382_F2.8290.94
202_L322_G2.7920.93
186_S219_L2.7510.93
451_L479_F2.6410.91
386_V498_V2.6020.91
219_L382_F2.5310.89
339_L451_L2.4800.88
365_V371_I2.4310.87
388_Y500_Y2.4100.87
41_G84_V2.3710.86
198_G318_A2.3620.86
517_V521_P2.3470.85
440_G467_G2.3410.85
24_T29_P2.3170.85
320_I382_F2.2860.84
26_S31_S2.2850.84
323_E362_S2.2250.82
314_D379_S2.2110.82
109_T248_G2.1980.81
43_P70_G2.1870.81
18_A23_I2.1820.81
186_S270_I2.1370.79
32_V325_V2.0940.78
467_G477_A2.0850.77
339_L342_I2.0680.77
290_T293_V2.0580.77
206_N438_Y2.0360.76
295_V301_F2.0030.74
331_S359_P1.9900.74
426_P459_T1.9690.73
186_S382_F1.9530.73
336_A380_N1.9370.72
242_I245_L1.9370.72
268_Y390_N1.9150.71
270_I320_I1.9100.71
259_A338_R1.9080.71
22_L29_P1.8990.70
339_L417_V1.8910.70
508_K512_G1.8780.69
509_Y512_G1.8640.69
118_G140_P1.8310.67
493_D498_V1.8000.66
18_A22_L1.7880.65
200_L219_L1.7830.65
70_G84_V1.7770.65
432_V481_A1.7610.64
326_N440_G1.7610.64
182_F186_S1.7440.63
41_G45_I1.7330.63
390_N394_D1.7230.62
441_D471_P1.7170.62
222_Q454_S1.7150.62
129_V249_E1.7120.62
43_P87_A1.7120.62
205_K250_T1.7080.62
495_S510_T1.7070.62
18_A31_S1.7060.62
177_E367_F1.7040.62
206_N245_L1.6970.61
249_E361_E1.6940.61
26_S29_P1.6910.61
305_N451_L1.6800.60
497_E509_Y1.6790.60
123_V359_P1.6540.59
175_T474_T1.6500.59
350_G469_L1.6480.59
21_V25_L1.6410.59
305_N417_V1.6390.58
94_I125_F1.6250.58
21_V28_V1.6010.57
264_D384_F1.5760.55
512_G521_P1.5720.55
62_F419_N1.5660.55
115_L255_A1.5600.55
57_E469_L1.5390.54
215_A245_L1.5370.53
200_L320_I1.5370.53
215_A306_V1.5310.53
29_P32_V1.5300.53
58_S61_A1.5240.53
342_I384_F1.5090.52
20_V23_I1.5040.52
418_V435_S1.5040.52
424_V430_D1.5010.52
146_E303_L1.4990.52
18_A21_V1.4970.51
174_I293_V1.4940.51
311_F513_L1.4890.51
219_L272_A1.4780.50
245_L251_A1.4760.50
212_A472_G1.4450.49
289_L403_R1.4360.48
248_G361_E1.4330.48
55_G58_S1.4320.48
184_I247_P1.4200.48
353_A357_L1.4190.48
357_L361_E1.4160.47
101_A107_S1.4140.47
89_A118_G1.4140.47
60_H179_K1.4110.47
351_E367_F1.4080.47
447_A497_E1.4050.47
277_T288_S1.3890.46
18_A24_T1.3890.46
200_L215_A1.3860.46
22_L28_V1.3840.46
470_Q473_E1.3820.46
45_I115_L1.3800.46
502_E512_G1.3780.45
221_S237_K1.3720.45
479_F487_A1.3680.45
449_A497_E1.3650.45
360_G438_Y1.3630.45
286_S415_F1.3570.44
335_V355_G1.3570.44
62_F291_A1.3560.44
466_L469_L1.3530.44
498_V516_G1.3470.44
24_T33_S1.3310.43
274_V292_G1.3280.43
348_T474_T1.3270.43
301_F311_F1.3240.43
171_Y291_A1.3220.43
245_L474_T1.3200.43
45_I90_L1.3180.43
19_V22_L1.3160.42
449_A510_T1.3160.42
127_L375_A1.3140.42
421_S424_V1.3120.42
43_P68_N1.3080.42
30_L36_D1.2940.41
192_I494_A1.2930.41
199_Q244_A1.2860.41
322_G364_P1.2750.40
311_F322_G1.2680.40
164_T170_Q1.2460.39
140_P377_P1.2450.39
312_R457_L1.2440.39
208_G326_N1.2430.39
139_I483_A1.2400.39
268_Y423_S1.2310.38
214_D288_S1.2280.38
444_V483_A1.2260.38
123_V292_G1.2180.38
24_T31_S1.2170.38
321_H384_F1.2130.37
174_I340_G1.2130.37
208_G212_A1.2100.37
165_E244_A1.2080.37
424_V449_A1.2070.37
343_P397_T1.2070.37
223_S271_N1.2020.37
268_Y380_N1.1970.37
41_G70_G1.1910.36
403_R415_F1.1880.36
214_D400_S1.1880.36
376_E387_E1.1870.36
268_Y388_Y1.1860.36
113_S182_F1.1780.36
266_G389_E1.1780.36
500_Y505_G1.1740.36
442_E497_E1.1730.36
237_K253_I1.1680.35
181_Q201_S1.1670.35
311_F380_N1.1650.35
89_A122_D1.1620.35
130_G318_A1.1590.35
469_L473_E1.1570.35
513_L516_G1.1570.35
224_P332_A1.1560.35
516_G521_P1.1550.35
303_L356_D1.1530.35
40_T45_I1.1520.35
54_V176_I1.1520.35
36_D42_K1.1500.35
376_E444_V1.1490.35
22_L38_T1.1490.35
115_L125_F1.1450.34
196_D381_S1.1440.34
440_G447_A1.1420.34
311_F365_V1.1390.34
173_D243_P1.1340.34
200_L270_I1.1340.34
20_V58_S1.1330.34
319_E366_S1.1320.34
27_A32_V1.1310.34
25_L31_S1.1270.34
305_N382_F1.1260.34
286_S357_L1.1180.33
167_E491_E1.1160.33
268_Y500_Y1.1080.33
321_H441_D1.1080.33
31_S41_G1.1070.33
328_G357_L1.1000.32
487_A502_E1.0990.32
227_Y428_G1.0990.32
345_I380_N1.0920.32
336_A498_V1.0810.32
197_T365_V1.0760.31
89_A120_G1.0730.31
102_N190_N1.0720.31
64_V69_S1.0720.31
332_A444_V1.0690.31
192_I414_P1.0660.31
344_G367_F1.0620.31
24_T28_V1.0610.31
335_V492_Y1.0610.31
322_G406_L1.0600.31
134_P137_Y1.0570.30
511_D514_T1.0540.30
67_S90_L1.0540.30
530_L533_I1.0500.30
333_N339_L1.0500.30
311_F318_A1.0490.30
184_I530_L1.0480.30
127_L183_S1.0450.30
22_L25_L1.0440.30
276_Y388_Y1.0440.30
204_V359_P1.0430.30
64_V107_S1.0430.30
372_P466_L1.0420.30
143_I319_E1.0380.30
270_I432_V1.0370.30
360_G519_V1.0330.29
99_L118_G1.0320.29
447_A498_V1.0300.29
122_D127_L1.0290.29
57_E68_N1.0270.29
23_I27_A1.0260.29
314_D511_D1.0220.29
243_P371_I1.0210.29
434_V444_V1.0210.29
380_N467_G1.0190.29
200_L268_Y1.0160.29
315_E354_V1.0080.28
23_I26_S1.0070.28
55_G64_V1.0020.28
351_E468_E1.0010.28
145_Y281_G0.9970.28
24_T209_T0.9960.28
362_S374_S0.9950.28
436_L467_G0.9890.28
456_P492_Y0.9880.28
409_G515_V0.9880.28
25_L214_D0.9870.28
24_T174_I0.9860.28
114_S164_T0.9850.28
337_V512_G0.9830.27
241_Y292_G0.9830.27
82_R143_I0.9810.27
206_N378_G0.9810.27
20_V218_Q0.9810.27
89_A220_S0.9800.27
137_Y438_Y0.9770.27
18_A288_S0.9760.27
84_V88_E0.9760.27
137_Y212_A0.9730.27
109_T200_L0.9730.27
48_S248_G0.9670.27
457_L475_T0.9670.27
355_G483_A0.9640.27
324_I517_V0.9640.27
135_G360_G0.9610.27
488_I500_Y0.9610.27
417_V451_L0.9600.27
365_V493_D0.9600.27
498_V510_T0.9570.26
507_T516_G0.9550.26
266_G390_N0.9520.26
357_L363_K0.9520.26
479_F511_D0.9490.26
204_V334_N0.9480.26
250_T295_V0.9460.26
345_I498_V0.9450.26
21_V32_V0.9440.26
20_V28_V0.9440.26
59_A465_Y0.9420.26
494_A499_R0.9380.26
29_P176_I0.9350.26
40_T71_T0.9340.26
224_P346_E0.9340.26
69_S91_K0.9330.26
45_I52_G0.9320.25
380_N465_Y0.9310.25
393_G418_V0.9310.25
130_G440_G0.9260.25
131_D191_E0.9210.25
446_A501_D0.9190.25
449_A462_D0.9190.25
131_D432_V0.9180.25
483_A492_Y0.9150.25
127_L138_R0.9140.25
181_Q322_G0.9120.25
20_V24_T0.9100.25
207_T520_S0.9080.25
204_V245_L0.9010.24
246_D435_S0.9010.24
29_P40_T0.8990.24
517_V520_S0.8960.24
57_E438_Y0.8950.24
494_A520_S0.8910.24
325_V384_F0.8900.24
184_I288_S0.8890.24
208_G440_G0.8890.24
230_Q303_L0.8890.24
101_A132_V0.8870.24
328_G438_Y0.8870.24
93_D366_S0.8860.24
237_K447_A0.8850.24
178_D182_F0.8840.24
323_E329_S0.8820.24
350_G384_F0.8810.24
169_T229_G0.8790.24
70_G80_Y0.8720.23
268_Y292_G0.8720.23
116_P203_D0.8720.23
419_N432_V0.8710.23
489_T522_Q0.8700.23
328_G393_G0.8700.23
357_L492_Y0.8690.23
68_N253_I0.8690.23
188_G252_N0.8690.23
315_E334_N0.8680.23
248_G382_F0.8650.23
205_K435_S0.8610.23
269_P454_S0.8610.23
434_V453_V0.8590.23
88_E148_T0.8580.23
94_I197_T0.8550.23
239_S243_P0.8550.23
141_I180_P0.8550.23
186_S221_S0.8530.23
255_A344_G0.8510.23
332_A386_V0.8490.22
372_P411_E0.8490.22
197_T246_D0.8480.22
224_P227_Y0.8480.22
354_V446_A0.8470.22
247_P456_P0.8430.22
66_V482_S0.8420.22
205_K489_T0.8420.22
23_I303_L0.8420.22
212_A274_V0.8420.22
104_T386_V0.8410.22
326_N393_G0.8410.22
205_K211_T0.8400.22
200_L213_T0.8370.22
132_V140_P0.8370.22
351_E465_Y0.8360.22
279_S401_P0.8360.22
247_P360_G0.8340.22
332_A394_D0.8330.22
19_V432_V0.8330.22
23_I359_P0.8200.21
276_Y500_Y0.8180.21
428_G458_S0.8170.21
461_D490_K0.8170.21
25_L29_P0.8150.21
410_A479_F0.8120.21
345_I475_T0.8120.21
184_I202_L0.8120.21
275_A295_V0.8100.21
43_P47_L0.8080.21
248_G363_K0.8070.21
64_V473_E0.8030.21
272_A324_I0.8020.21
112_I384_F0.8000.21
303_L331_S0.7980.21
355_G473_E0.7950.21
373_G440_G0.7950.21
202_L349_N0.7930.21
26_S175_T0.7910.20
163_K494_A0.7900.20
20_V30_L0.7890.20
490_K497_E0.7890.20
498_V509_Y0.7860.20
143_I404_Q0.7840.20
182_F274_V0.7840.20
135_G312_R0.7820.20
68_N145_Y0.7820.20
489_T512_G0.7770.20
194_G245_L0.7760.20
497_E510_T0.7760.20
89_A146_E0.7720.20
122_D288_S0.7700.20
350_G454_S0.7680.20
51_D61_A0.7670.20
273_V515_V0.7660.20
57_E66_V0.7650.20
223_S484_D0.7640.20
288_S436_L0.7640.20
131_D260_E0.7630.20
173_D406_L0.7590.19
343_P441_D0.7570.19
390_N396_R0.7570.19
386_V500_Y0.7550.19
423_S430_D0.7550.19
53_P119_Q0.7510.19
418_V423_S0.7510.19
80_Y118_G0.7510.19
272_A515_V0.7500.19
51_D115_L0.7460.19
208_G281_G0.7450.19
226_L359_P0.7440.19
204_V337_V0.7440.19
263_A319_E0.7420.19
313_V386_V0.7410.19
200_L240_V0.7410.19
341_S382_F0.7410.19
107_S466_L0.7390.19
38_T46_S0.7380.19
200_L388_Y0.7360.19
277_T362_S0.7360.19
28_V32_V0.7340.19
462_D465_Y0.7320.19
84_V103_I0.7320.19
239_S332_A0.7310.19
469_L472_G0.7290.19
200_L274_V0.7270.18
437_R443_P0.7260.18
41_G88_E0.7250.18
208_G438_Y0.7250.18
207_T313_V0.7240.18
66_V115_L0.7240.18
62_F118_G0.7230.18
28_V42_K0.7230.18
32_V165_E0.7220.18
180_P252_N0.7220.18
516_G530_L0.7210.18
84_V148_T0.7200.18
197_T229_G0.7180.18
171_Y184_I0.7180.18
486_A515_V0.7160.18
482_S501_D0.7150.18
427_G488_I0.7140.18
231_M255_A0.7130.18
206_N375_A0.7120.18
372_P384_F0.7110.18
496_V513_L0.7110.18
208_G245_L0.7100.18
21_V27_A0.7090.18
359_P471_P0.7080.18
211_T224_P0.7070.18
220_S265_A0.7050.18
50_P69_S0.7050.18
432_V503_P0.7030.18
168_S184_I0.7030.18
413_D439_Q0.7020.18
115_L121_T0.7020.18
477_A483_A0.7000.18
134_P187_Q0.7000.18
48_S146_E0.6990.18
189_E436_L0.6980.18
325_V393_G0.6980.18
437_R467_G0.6970.18
174_I182_F0.6950.18
57_E145_Y0.6940.18
483_A495_S0.6930.17
202_L446_A0.6930.17
409_G479_F0.6920.17
140_P224_P0.6900.17
216_S291_A0.6870.17
39_V84_V0.6870.17
57_E91_K0.6840.17
314_D326_N0.6810.17
298_E301_F0.6810.17
444_V472_G0.6800.17
362_S448_N0.6790.17
51_D69_S0.6770.17
371_I380_N0.6750.17
322_G371_I0.6730.17
354_V451_L0.6730.17
166_E171_Y0.6730.17
243_P378_G0.6730.17
121_T217_V0.6700.17
24_T42_K0.6680.17
498_V515_V0.6670.17
250_T481_A0.6670.17
449_A465_Y0.6670.17
349_N380_N0.6660.17
268_Y492_Y0.6660.17
341_S354_V0.6660.17
327_T389_E0.6620.17
41_G47_L0.6610.17
208_G375_A0.6610.17
24_T32_V0.6610.17
25_L33_S0.6590.17
501_D505_G0.6590.17
198_G215_A0.6550.16
326_N362_S0.6550.16
218_Q422_T0.6550.16
409_G496_V0.6540.16
58_S180_P0.6540.16
228_F231_M0.6530.16
325_V468_E0.6520.16
260_E371_I0.6520.16
410_A454_S0.6510.16
33_S382_F0.6510.16
276_Y310_K0.6500.16
68_N243_P0.6490.16
337_V430_D0.6490.16
201_S300_T0.6480.16
311_F497_E0.6460.16
384_F446_A0.6440.16
54_V180_P0.6430.16
23_I66_V0.6410.16
206_N326_N0.6400.16
365_V438_Y0.6380.16
254_S459_T0.6370.16
137_Y357_L0.6370.16
23_I79_R0.6360.16
219_L432_V0.6350.16
146_E176_I0.6350.16
45_I66_V0.6330.16
456_P490_K0.6320.16
180_P299_R0.6320.16
205_K408_I0.6310.16
182_F281_G0.6300.16
313_V336_A0.6290.16
367_F401_P0.6280.16
270_I388_Y0.6280.16
453_V459_T0.6280.16
412_Q423_S0.6280.16
137_Y471_P0.6260.16
430_D433_A0.6250.16
128_E314_D0.6250.16
402_L425_S0.6250.16
351_E471_P0.6250.16
367_F387_E0.6240.16
20_V169_T0.6240.16
55_G202_L0.6240.16
303_L372_P0.6230.16
21_V26_S0.6230.16
245_L364_P0.6220.16
359_P458_S0.6200.15
124_K262_N0.6200.15
373_G445_S0.6200.15
39_V118_G0.6200.15
254_S364_P0.6200.15
120_G397_T0.6180.15
303_L401_P0.6170.15
95_A98_K0.6160.15
184_I272_A0.6150.15
43_P59_A0.6150.15
270_I318_A0.6150.15
60_H204_V0.6150.15
228_F274_V0.6140.15
350_G426_P0.6140.15
138_R171_Y0.6100.15
139_I324_I0.6090.15
196_D315_E0.6090.15
513_L518_P0.6060.15
55_G205_K0.6050.15
201_S273_V0.6040.15
436_L492_Y0.6030.15
177_E262_N0.6010.15
517_V522_Q0.6010.15
371_I387_E0.6010.15
70_G113_S0.6010.15
84_V87_A0.6010.15
246_D294_S0.6000.15
102_N281_G0.5980.15
26_S94_I0.5960.15
270_I352_S0.5950.15
80_Y83_E0.5950.15
301_F329_S0.5950.15
102_N137_Y0.5940.15
293_V342_I0.5940.15
508_K514_T0.5940.15
20_V27_A0.5940.15
29_P309_E0.5930.15
188_G423_S0.5930.15
53_P67_S0.5930.15
215_A268_Y0.5900.15
322_G380_N0.5880.15
193_Y406_L0.5840.15
329_S332_A0.5830.15
513_L519_V0.5830.15
382_F500_Y0.5820.14
47_L141_I0.5820.14
115_L448_N0.5800.14
276_Y345_I0.5790.14
89_A434_V0.5790.14
217_V490_K0.5780.14
339_L380_N0.5780.14
168_S332_A0.5770.14
279_S300_T0.5770.14
510_T516_G0.5740.14
314_D328_G0.5730.14
317_D520_S0.5730.14
22_L31_S0.5720.14
417_V472_G0.5710.14
32_V44_D0.5710.14
510_T517_V0.5680.14
204_V270_I0.5680.14
297_P403_R0.5670.14
178_D459_T0.5660.14
509_Y518_P0.5650.14
298_E303_L0.5650.14
45_I87_A0.5630.14
432_V521_P0.5630.14
165_E177_E0.5630.14
496_V505_G0.5630.14
39_V45_I0.5620.14
452_F462_D0.5620.14
41_G68_N0.5610.14
360_G426_P0.5600.14
129_V147_H0.5600.14
58_S83_E0.5590.14
166_E169_T0.5590.14
107_S135_G0.5590.14
382_F391_D0.5580.14
290_T327_T0.5570.14
57_E60_H0.5560.14
22_L515_V0.5560.14
93_D385_N0.5550.14
377_P469_L0.5540.14
71_T246_D0.5540.14
245_L395_V0.5530.14
273_V296_Q0.5520.14
435_S476_T0.5510.14
273_V429_S0.5510.14
139_I142_D0.5500.14
352_S381_S0.5500.14
355_G375_A0.5500.14
513_L517_V0.5490.14
328_G372_P0.5490.14
455_D483_A0.5490.14
440_G512_G0.5490.14
270_I494_A0.5480.14
397_T420_V0.5470.14
41_G86_T0.5470.14
429_S480_T0.5470.14
36_D90_L0.5460.14
85_Q93_D0.5450.14
460_S490_K0.5440.14
33_S38_T0.5440.14
109_T213_T0.5440.14
382_F451_L0.5430.14
373_G376_E0.5430.14
493_D499_R0.5430.14
323_E334_N0.5420.14
295_V335_V0.5410.14
499_R502_E0.5410.14
436_L466_L0.5410.14
95_A496_V0.5400.13
281_G360_G0.5390.13
380_N475_T0.5390.13
84_V151_V0.5370.13
123_V126_Q0.5350.13
259_A262_N0.5340.13
222_Q419_N0.5330.13
452_F509_Y0.5330.13
22_L27_A0.5310.13
92_L143_I0.5300.13
221_S397_T0.5290.13
21_V166_E0.5290.13
208_G247_P0.5280.13
176_I281_G0.5280.13
359_P369_V0.5270.13
55_G131_D0.5270.13
221_S424_V0.5260.13
362_S430_D0.5260.13
458_S509_Y0.5260.13
322_G381_S0.5260.13
419_N447_A0.5250.13
127_L390_N0.5250.13
353_A452_F0.5250.13
203_D252_N0.5240.13
506_D519_V0.5240.13
188_G255_A0.5240.13
84_V147_H0.5230.13
371_I438_Y0.5230.13
465_Y501_D0.5220.13
30_L72_L0.5210.13
421_S521_P0.5190.13
354_V479_F0.5190.13
334_N447_A0.5180.13
283_T400_S0.5170.13
430_D496_V0.5150.13
293_V378_G0.5150.13
433_A466_L0.5140.13
489_T501_D0.5130.13
131_D257_V0.5120.13
509_Y514_T0.5120.13
436_L441_D0.5100.13
209_T320_I0.5100.13
355_G386_V0.5100.13
20_V229_G0.5100.13
293_V482_S0.5100.13
381_S385_N0.5090.13
493_D497_E0.5090.13
69_S92_L0.5090.13
93_D129_V0.5090.13
380_N457_L0.5080.13
365_V413_D0.5080.13
202_L343_P0.5080.13
28_V38_T0.5080.13
129_V268_Y0.5080.13
281_G320_I0.5070.13
331_S377_P0.5050.13
226_L260_E0.5020.13
384_F451_L0.5020.13
123_V182_F0.5000.13
497_E516_G0.5000.13
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2qsvA 1 0.3684 98.2 0.896 Contact Map
3iduA 1 0.216 98.1 0.898 Contact Map
4tshB 1 0.637 98.1 0.899 Contact Map
2l0dA 1 0.2069 98.1 0.899 Contact Map
2kutA 1 0.2087 97.7 0.908 Contact Map
2pn5A 1 0.7604 97.4 0.913 Contact Map
4e9lA 1 0.412 97.3 0.914 Contact Map
2b39A 1 0.7695 97.1 0.917 Contact Map
3prxB 1 0.7659 96.9 0.92 Contact Map
5a2fA 1 0.2831 96.4 0.924 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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