Q9HPT2 - HALSA - GREMLIN Contacts

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Q9HPT2 - Acyl-CoA dehydrogenase

UniProt:	Q9HPT2	Sequences: MDLSAEQRRMRESVREFAVEEIRPVAAEADRTQSFPEEVWDDLGELGVTAMTTPASYGGLDVDSLTYSVVNEQLAYGALSVATALSVHCLATSCIAEFGDDDQQERWLPEMADGRPVGAFALSEPDAGSNPAQMSTTARRDGDEFVLNGKKQWITNGKRSGVVIVFAKIDGDDDKITQFLVPKDADGLTVGPKEDKLGLRASDTTSLLFDDCRIPASNQLTEAGRGLSAALHILTGGRIGIASQAVGLSQAALDAALAYADDREQFDQPISEIQTIRHKLADMETQVQAARLLSRDAARMADAGEDHQTAAAKAKYFASEAAVDVTNEAVQIHGGYGYTKDFDVERFYRDSKITTIYEGTSEIQKEVIARGLID	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	374 (363)
Sequences:	33999 (19410)
Seq/√Len:	1018.7

ECOLI - CAIA YDIO AIDB FADE
BACSU - ACDC ACDB ACDA FADE YDBM
HALSA - Q9HPT2 Q9HS75 Q9HRI6 Q9HRB3 Q9HQF0 Q9HMK7
SULSO - Q97UW6 Q97V73 Q97U78 Q97WQ8 Q97VU6 Q97XW3 Q97YZ6 Q97VV8 Q97YZ3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
144_E	213_R	4.153	1.00
148_N	211_D	3.820	1.00
286_Q	324_D	3.449	1.00
21_E	42_D	3.286	1.00
140_R	216_A	2.941	1.00
110_E	115_R	2.939	1.00
189_T	210_D	2.929	1.00
101_D	105_E	2.830	1.00
63_D	66_T	2.754	1.00
28_E	32_T	2.716	1.00
141_D	213_R	2.692	1.00
15_R	73_Q	2.641	1.00
177_T	219_Q	2.606	1.00
279_K	328_E	2.442	1.00
258_A	262_D	2.380	1.00
110_E	116_P	2.367	1.00
150_K	208_L	2.292	1.00
250_Q	291_R	2.239	1.00
167_A	179_F	2.050	1.00
222_E	225_R	2.048	1.00
101_D	104_Q	2.038	1.00
269_P	272_E	2.032	1.00
16_E	20_E	2.026	1.00
340_K	345_E	1.999	1.00
141_D	144_E	1.985	1.00
100_D	103_Q	1.954	1.00
345_E	349_R	1.905	1.00
260_A	332_I	1.904	1.00
225_R	228_S	1.903	1.00
163_V	183_K	1.873	1.00
72_E	291_R	1.860	1.00
54_P	96_A	1.825	1.00
253_L	287_V	1.815	1.00
299_R	303_A	1.803	1.00
150_K	206_S	1.800	1.00
41_D	45_E	1.799	1.00
42_D	45_E	1.793	1.00
145_F	179_F	1.753	1.00
320_E	361_S	1.750	1.00
76_Y	254_D	1.742	1.00
146_V	213_R	1.694	1.00
185_A	212_C	1.691	1.00
264_E	269_P	1.676	1.00
250_Q	254_D	1.669	1.00
139_R	148_N	1.667	1.00
73_Q	76_Y	1.667	1.00
119_A	163_V	1.660	1.00
275_T	278_H	1.658	1.00
141_D	146_V	1.642	1.00
255_A	343_D	1.612	1.00
215_P	218_N	1.610	1.00
189_T	208_L	1.596	1.00
260_A	276_I	1.596	1.00
106_R	217_S	1.595	1.00
283_M	325_V	1.591	1.00
146_V	211_D	1.589	1.00
145_F	216_A	1.579	1.00
157_G	205_T	1.572	1.00
268_Q	272_E	1.562	1.00
300_M	310_A	1.560	1.00
106_R	110_E	1.554	1.00
182_P	218_N	1.551	1.00
55_A	61_D	1.538	1.00
289_A	317_F	1.533	1.00
296_D	300_M	1.531	1.00
140_R	223_A	1.521	1.00
8_R	11_R	1.510	1.00
143_D	216_A	1.506	1.00
170_D	173_D	1.492	1.00
143_D	213_R	1.491	1.00
105_E	109_P	1.489	1.00
123_S	153_W	1.485	1.00
148_N	210_D	1.484	1.00
9_R	12_E	1.480	1.00
12_E	16_E	1.474	1.00
124_E	151_K	1.469	1.00
158_K	205_T	1.467	1.00
252_A	326_T	1.464	1.00
336_Y	342_F	1.463	1.00
110_E	113_D	1.455	1.00
290_A	318_A	1.454	1.00
265_Q	273_I	1.452	1.00
216_A	219_Q	1.450	1.00
191_G	208_L	1.449	1.00
219_Q	223_A	1.443	1.00
276_I	332_I	1.438	1.00
191_G	206_S	1.437	1.00
57_Y	104_Q	1.433	1.00
255_A	258_A	1.422	1.00
257_L	261_D	1.402	1.00
102_D	106_R	1.398	1.00
288_Q	296_D	1.391	1.00
251_A	255_A	1.389	1.00
324_D	328_E	1.386	1.00
78_A	81_V	1.383	1.00
323_V	355_T	1.381	1.00
9_R	13_S	1.372	1.00
76_Y	250_Q	1.366	1.00
140_R	144_E	1.365	1.00
138_A	179_F	1.360	1.00
65_L	299_R	1.359	1.00
18_A	77_G	1.344	1.00
37_E	41_D	1.339	1.00
98_F	232_H	1.339	1.00
147_L	179_F	1.337	1.00
283_M	328_E	1.335	1.00
72_E	250_Q	1.331	1.00
316_Y	361_S	1.328	1.00
14_V	48_V	1.322	1.00
327_N	352_K	1.316	1.00
72_E	295_R	1.313	1.00
11_R	73_Q	1.313	1.00
195_D	340_K	1.311	1.00
51_M	70_V	1.302	1.00
103_Q	107_W	1.292	1.00
64_S	302_D	1.291	1.00
182_P	185_A	1.290	1.00
214_I	218_N	1.282	1.00
249_S	287_V	1.269	1.00
102_D	217_S	1.263	1.00
144_E	216_A	1.259	1.00
111_M	118_G	1.250	1.00
256_A	329_A	1.249	1.00
109_P	113_D	1.248	1.00
282_D	365_K	1.246	1.00
121_A	154_I	1.242	1.00
249_S	325_V	1.232	1.00
104_Q	108_L	1.215	1.00
183_K	188_L	1.214	1.00
31_R	195_D	1.213	1.00
140_R	145_F	1.212	1.00
68_S	298_A	1.209	1.00
8_R	12_E	1.206	1.00
63_D	302_D	1.204	1.00
322_A	351_S	1.202	1.00
235_T	308_Q	1.199	1.00
188_L	212_C	1.188	1.00
42_D	46_L	1.187	1.00
237_G	358_E	1.187	1.00
296_D	299_R	1.186	1.00
253_L	257_L	1.186	1.00
41_D	44_G	1.185	1.00
126_D	135_S	1.183	1.00
268_Q	273_I	1.179	1.00
106_R	218_N	1.177	1.00
62_V	66_T	1.177	1.00
25_V	29_A	1.176	1.00
287_V	325_V	1.175	1.00
327_N	355_T	1.173	1.00
284_E	288_Q	1.171	1.00
139_R	146_V	1.167	1.00
243_S	294_S	1.162	1.00
68_S	243_S	1.161	1.00
166_F	178_Q	1.160	1.00
53_T	112_A	1.158	1.00
169_I	177_T	1.156	1.00
251_A	347_F	1.152	1.00
75_A	82_A	1.150	1.00
29_A	201_A	1.146	1.00
255_A	333_H	1.144	1.00
323_V	327_N	1.135	1.00
279_K	362_E	1.133	1.00
11_R	69_V	1.133	1.00
312_A	364_Q	1.132	1.00
13_S	46_L	1.131	1.00
116_P	161_G	1.123	1.00
227_L	231_L	1.122	1.00
329_A	344_V	1.121	1.00
290_A	321_A	1.113	1.00
107_W	162_V	1.109	1.00
183_K	190_V	1.108	1.00
352_K	355_T	1.105	1.00
185_A	218_N	1.104	1.00
300_M	305_E	1.093	1.00
103_Q	180_L	1.092	1.00
137_T	148_N	1.088	1.00
286_Q	328_E	1.074	1.00
121_A	163_V	1.074	1.00
25_V	28_E	1.070	1.00
145_F	169_I	1.063	1.00
41_D	115_R	1.061	1.00
99_G	103_Q	1.054	1.00
136_T	147_L	1.053	1.00
355_T	361_S	1.050	1.00
118_G	162_V	1.049	1.00
44_G	49_T	1.047	1.00
165_V	181_V	1.045	1.00
147_L	165_V	1.042	1.00
246_V	287_V	1.041	1.00
188_L	207_L	1.029	1.00
286_Q	321_A	1.026	1.00
166_F	176_I	1.025	1.00
138_A	167_A	1.024	1.00
187_G	212_C	1.024	1.00
285_T	313_K	1.022	1.00
56_S	105_E	1.019	1.00
139_R	211_D	1.016	1.00
97_E	232_H	1.015	1.00
13_S	48_V	1.012	1.00
91_A	118_G	1.012	1.00
130_N	133_Q	1.010	1.00
38_E	41_D	1.005	1.00
102_D	105_E	1.001	1.00
213_R	216_A	0.998	1.00
320_E	324_D	0.995	1.00
261_D	271_S	0.994	1.00
14_V	18_A	0.988	1.00
316_Y	365_K	0.984	1.00
323_V	348_Y	0.983	1.00
27_A	31_R	0.983	1.00
165_V	209_F	0.983	1.00
121_A	209_F	0.979	1.00
326_T	351_S	0.975	1.00
292_L	296_D	0.973	1.00
145_F	223_A	0.970	1.00
245_A	354_T	0.959	1.00
260_A	270_I	0.959	1.00
103_Q	218_N	0.958	1.00
246_V	294_S	0.957	1.00
199_L	353_I	0.953	1.00
321_A	324_D	0.953	1.00
17_F	42_D	0.952	1.00
163_V	188_L	0.947	1.00
257_L	280_L	0.945	1.00
106_R	182_P	0.943	1.00
282_D	286_Q	0.940	1.00
163_V	207_L	0.936	1.00
179_F	219_Q	0.930	1.00
252_A	347_F	0.928	1.00
91_A	164_I	0.928	1.00
197_L	348_Y	0.919	1.00
260_A	271_S	0.914	1.00
157_G	190_V	0.912	1.00
177_T	223_A	0.910	1.00
153_W	336_Y	0.909	1.00
98_F	229_A	0.908	1.00
361_S	365_K	0.907	1.00
147_L	167_A	0.907	1.00
14_V	70_V	0.907	1.00
320_E	355_T	0.904	1.00
152_Q	206_S	0.903	1.00
297_A	314_A	0.894	1.00
319_S	361_S	0.893	1.00
254_D	258_A	0.891	1.00
53_T	92_T	0.890	1.00
65_L	302_D	0.883	1.00
31_R	340_K	0.883	1.00
162_V	182_P	0.875	1.00
320_E	365_K	0.874	1.00
185_A	188_L	0.871	1.00
353_I	357_Y	0.871	1.00
139_R	170_D	0.870	1.00
147_L	214_I	0.869	1.00
186_D	213_R	0.868	1.00
168_K	176_I	0.868	1.00
330_V	348_Y	0.868	1.00
286_Q	317_F	0.867	1.00
168_K	173_D	0.867	1.00
65_L	69_V	0.867	1.00
30_D	349_R	0.866	1.00
119_A	183_K	0.862	1.00
170_D	175_K	0.860	1.00
119_A	160_S	0.859	1.00
284_E	313_K	0.858	1.00
15_R	19_V	0.858	1.00
122_L	234_L	0.858	1.00
56_S	101_D	0.854	1.00
37_E	161_G	0.853	1.00
100_D	104_Q	0.853	1.00
258_A	261_D	0.850	1.00
17_F	46_L	0.847	1.00
25_V	38_E	0.842	1.00
153_W	339_T	0.840	1.00
354_T	357_Y	0.838	1.00
248_L	322_A	0.836	1.00
323_V	352_K	0.835	1.00
65_L	295_R	0.834	1.00
248_L	347_F	0.832	1.00
54_P	57_Y	0.831	1.00
278_H	366_E	0.829	1.00
129_S	363_I	0.828	1.00
144_E	215_P	0.825	1.00
121_A	165_V	0.824	1.00
277_R	366_E	0.824	1.00
198_G	350_D	0.822	1.00
321_A	325_V	0.822	1.00
142_G	213_R	0.818	1.00
256_A	332_I	0.818	1.00
18_A	74_L	0.817	1.00
278_H	282_D	0.817	1.00
52_T	67_Y	0.813	1.00
116_P	162_V	0.812	1.00
190_V	207_L	0.811	1.00
326_T	347_F	0.811	1.00
69_V	73_Q	0.808	1.00
19_V	76_Y	0.808	1.00
80_S	201_A	0.808	1.00
209_F	212_C	0.806	1.00
11_R	15_R	0.801	1.00
17_F	43_L	0.800	1.00
138_A	145_F	0.800	1.00
256_A	333_H	0.799	1.00
13_S	16_E	0.799	1.00
43_L	48_V	0.797	1.00
288_Q	291_R	0.796	1.00
17_F	21_E	0.795	1.00
164_I	178_Q	0.794	1.00
260_A	280_L	0.787	1.00
162_V	180_L	0.785	1.00
145_F	219_Q	0.784	1.00
197_L	345_E	0.784	1.00
56_S	59_G	0.780	1.00
39_V	81_V	0.780	1.00
249_S	321_A	0.779	1.00
179_F	214_I	0.777	1.00
248_L	351_S	0.775	1.00
288_Q	292_L	0.774	1.00
38_E	42_D	0.771	1.00
327_N	348_Y	0.771	1.00
330_V	344_V	0.770	1.00
27_A	346_R	0.765	1.00
255_A	347_F	0.764	1.00
282_D	328_E	0.760	1.00
242_A	314_A	0.759	1.00
241_I	358_E	0.758	1.00
57_Y	101_D	0.758	1.00
19_V	77_G	0.757	1.00
246_V	290_A	0.756	1.00
138_A	169_I	0.756	1.00
307_H	310_A	0.753	1.00
69_V	295_R	0.753	1.00
326_T	348_Y	0.752	1.00
283_M	329_A	0.752	1.00
134_M	166_F	0.751	1.00
317_F	321_A	0.750	1.00
285_T	317_F	0.749	1.00
253_L	284_E	0.749	1.00
279_K	332_I	0.749	1.00
121_A	207_L	0.748	1.00
348_Y	352_K	0.747	1.00
263_R	266_F	0.745	1.00
161_G	183_K	0.745	1.00
140_R	143_D	0.744	1.00
252_A	329_A	0.743	1.00
144_E	217_S	0.739	1.00
256_A	260_A	0.739	1.00
282_D	324_D	0.739	1.00
259_Y	336_Y	0.738	1.00
293_L	314_A	0.732	1.00
134_M	176_I	0.731	1.00
274_Q	278_H	0.728	1.00
270_I	273_I	0.728	1.00
199_L	357_Y	0.727	1.00
250_Q	284_E	0.726	1.00
366_E	370_R	0.725	1.00
242_A	294_S	0.723	1.00
177_T	224_G	0.721	1.00
92_T	111_M	0.721	1.00
161_G	184_D	0.721	1.00
324_D	327_N	0.721	1.00
177_T	221_T	0.717	1.00
107_W	180_L	0.717	1.00
346_R	350_D	0.713	1.00
285_T	316_Y	0.713	1.00
28_E	31_R	0.709	1.00
219_Q	222_E	0.707	1.00
136_T	151_K	0.706	1.00
76_Y	251_A	0.704	1.00
18_A	22_I	0.702	1.00
170_D	224_G	0.699	1.00
293_L	313_K	0.699	1.00
158_K	203_D	0.698	1.00
289_A	293_L	0.698	1.00
11_R	72_E	0.697	1.00
51_M	62_V	0.696	1.00
225_R	229_A	0.695	1.00
19_V	23_R	0.695	1.00
169_I	175_K	0.695	1.00
120_F	230_A	0.694	1.00
56_S	104_Q	0.691	1.00
99_G	104_Q	0.690	1.00
147_L	181_V	0.690	1.00
107_W	218_N	0.689	1.00
140_R	146_V	0.688	1.00
331_Q	352_K	0.687	1.00
330_V	337_G	0.683	1.00
184_D	188_L	0.682	1.00
124_E	136_T	0.681	1.00
195_D	200_R	0.679	1.00
245_A	319_S	0.679	1.00
168_K	175_K	0.677	1.00
168_K	171_G	0.677	1.00
364_Q	367_V	0.676	1.00
322_A	326_T	0.672	1.00
22_I	39_V	0.669	1.00
134_M	168_K	0.668	1.00
56_S	61_D	0.668	1.00
273_I	277_R	0.667	1.00
326_T	344_V	0.664	1.00
200_R	340_K	0.663	1.00
298_A	302_D	0.654	1.00
122_L	131_P	0.654	1.00
164_I	220_L	0.654	1.00
111_M	162_V	0.649	1.00
291_R	295_R	0.649	1.00
277_R	369_A	0.648	1.00
242_A	318_A	0.646	1.00
53_T	57_Y	0.644	1.00
107_W	116_P	0.643	1.00
333_H	344_V	0.642	1.00
166_F	230_A	0.640	1.00
15_R	76_Y	0.639	1.00
10_M	70_V	0.638	1.00
360_T	363_I	0.635	1.00
94_C	233_I	0.632	1.00
39_V	42_D	0.632	1.00
83_T	199_L	0.630	1.00
286_Q	289_A	0.629	1.00
10_M	66_T	0.628	1.00
198_G	338_Y	0.628	1.00
306_D	310_A	0.627	1.00
23_R	26_A	0.624	1.00
276_I	280_L	0.623	1.00
293_L	317_F	0.621	1.00
16_E	19_V	0.621	1.00
137_T	171_G	0.620	1.00
256_A	283_M	0.619	1.00
294_S	318_A	0.619	1.00
150_K	191_G	0.616	1.00
249_S	290_A	0.614	1.00
154_I	207_L	0.613	1.00
313_K	368_I	0.612	1.00
142_G	146_V	0.606	1.00
136_T	209_F	0.602	1.00
279_K	331_Q	0.602	1.00
169_I	223_A	0.602	1.00
125_P	150_K	0.601	1.00
84_A	87_V	0.599	1.00
279_K	282_D	0.599	1.00
265_Q	270_I	0.598	1.00
251_A	254_D	0.597	1.00
239_I	298_A	0.596	1.00
37_E	159_R	0.595	1.00
316_Y	368_I	0.591	1.00
235_T	311_A	0.589	1.00
246_V	250_Q	0.588	1.00
181_V	209_F	0.585	1.00
286_Q	320_E	0.584	1.00
30_D	200_R	0.578	1.00
136_T	149_G	0.577	1.00
243_S	247_G	0.576	1.00
26_A	346_R	0.576	1.00
249_S	252_A	0.575	1.00
251_A	343_D	0.575	1.00
54_P	59_G	0.575	1.00
92_T	108_L	0.574	1.00
96_A	104_Q	0.574	1.00
67_Y	240_G	0.574	1.00
179_F	216_A	0.573	1.00
288_Q	293_L	0.572	1.00
159_R	203_D	0.571	1.00
27_A	343_D	0.571	1.00
33_Q	200_R	0.571	1.00
276_I	279_K	0.568	1.00
290_A	317_F	0.567	1.00
296_D	310_A	0.564	1.00
37_E	117_V	0.564	1.00
335_G	338_Y	0.562	1.00
266_F	273_I	0.562	1.00
165_V	212_C	0.559	1.00
64_S	301_A	0.559	1.00
285_T	289_A	0.558	1.00
343_D	347_F	0.557	1.00
343_D	346_R	0.557	1.00
196_K	204_T	0.556	1.00
352_K	356_I	0.555	1.00
188_L	209_F	0.555	1.00
15_R	77_G	0.553	1.00
22_I	81_V	0.553	1.00
33_Q	195_D	0.553	1.00
50_A	60_L	0.552	1.00
162_V	218_N	0.552	1.00
43_L	81_V	0.551	1.00
122_L	166_F	0.551	1.00
141_D	216_A	0.551	1.00
216_A	223_A	0.550	1.00
106_R	109_P	0.550	1.00
155_T	204_T	0.550	1.00
222_E	229_A	0.549	1.00
94_C	98_F	0.548	1.00
293_L	297_A	0.548	1.00
323_V	351_S	0.546	1.00
250_Q	287_V	0.546	1.00
57_Y	109_P	0.545	1.00
239_I	294_S	0.544	1.00
282_D	320_E	0.544	1.00
84_A	88_H	0.542	1.00
157_G	207_L	0.541	1.00
179_F	218_N	0.538	1.00
85_L	89_C	0.536	1.00
290_A	314_A	0.535	1.00
50_A	112_A	0.534	1.00
234_L	238_R	0.533	1.00
223_A	226_G	0.532	1.00
319_S	354_T	0.532	1.00
197_L	349_R	0.531	1.00
270_I	276_I	0.531	1.00
20_E	24_P	0.531	1.00
136_T	165_V	0.530	1.00
316_Y	320_E	0.529	1.00
290_A	325_V	0.529	1.00
363_I	366_E	0.528	1.00
10_M	14_V	0.527	1.00
48_V	70_V	0.527	1.00
171_G	174_D	0.526	1.00
273_I	276_I	0.525	1.00
95_I	99_G	0.524	1.00
91_A	111_M	0.523	1.00
259_Y	262_D	0.521	1.00
234_L	237_G	0.520	1.00
283_M	332_I	0.520	1.00
103_Q	106_R	0.519	1.00
282_D	285_T	0.518	1.00
264_E	272_E	0.518	1.00
13_S	60_L	0.517	1.00
259_Y	342_F	0.517	1.00
228_S	232_H	0.515	1.00
94_C	229_A	0.515	1.00
29_A	78_A	0.510	1.00
69_V	72_E	0.509	1.00
193_K	206_S	0.509	1.00
200_R	350_D	0.509	1.00
29_A	34_S	0.508	1.00
79_L	248_L	0.507	1.00
91_A	94_C	0.507	1.00
21_E	24_P	0.507	1.00
184_D	187_G	0.506	1.00
127_A	135_S	0.504	1.00
181_V	212_C	0.504	1.00
136_T	167_A	0.502	1.00
119_A	154_I	0.502	1.00
33_Q	192_P	0.501	1.00
143_D	217_S	0.500	1.00
169_I	179_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2d29A	4	1	100	0.064	Contact Map
3nf4A	4	0.992	100	0.066	Contact Map
2jifA	4	0.9973	100	0.069	Contact Map
1rx0A	4	1	100	0.07	Contact Map
3pfdA	4	0.9813	100	0.071	Contact Map
1ivhA	4	1	100	0.071	Contact Map
2dvlA	4	0.9866	100	0.072	Contact Map
1ukwA	4	1	100	0.072	Contact Map
4l1fA	4	1	100	0.073	Contact Map
4p13A	4	1	100	0.074	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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