GREMLIN Database
Q9HPR8 - DNA helicase
UniProt: Q9HPR8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 821 (767)
Sequences: 582 (437)
Seq/√Len: 15.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
257_C263_C7.6261.00
710_V765_V5.6451.00
357_I380_V5.4611.00
714_V729_V4.6811.00
254_C257_C4.4491.00
714_V727_I4.4321.00
254_C263_C4.2861.00
290_Y588_E4.1121.00
768_F798_L3.7031.00
695_P801_D3.5921.00
273_E279_I3.3820.99
496_V580_V3.1570.99
290_Y627_R3.0780.98
766_V798_L3.0350.98
70_F118_W2.9840.98
691_F800_G2.9800.98
378_A390_V2.9550.98
100_S103_E2.8630.98
762_E794_K2.7750.97
710_V799_V2.6950.96
530_V538_R2.6940.96
273_E278_R2.6780.96
451_N454_Q2.6700.96
222_R226_E2.6600.96
787_V791_R2.6570.96
430_D436_A2.6020.96
574_E599_A2.5960.96
341_G347_A2.5490.95
498_V559_A2.4860.94
728_G764_I2.4840.94
569_I573_L2.4080.93
32_D46_Y2.3660.93
789_L810_L2.3470.92
245_P263_C2.3430.92
713_V797_V2.3040.92
271_D279_I2.2870.91
570_L573_L2.2610.91
502_T525_G2.2600.91
363_V378_A2.2590.91
313_W320_R2.2580.91
343_W347_A2.2320.90
366_S402_D2.2240.90
539_L552_L2.2040.90
588_E627_R2.1910.89
257_C269_R2.1840.89
263_C267_S2.1830.89
649_I796_L2.1440.88
502_T505_A2.1410.88
267_S273_E2.1400.88
256_Y260_Q2.1390.88
480_Y512_A2.1280.88
439_R465_E2.1240.88
267_S277_G2.1110.88
256_Y269_R2.1100.87
508_N754_D2.0960.87
287_E434_D2.0850.87
672_Q794_K2.0790.87
550_A554_S2.0480.86
458_V491_A2.0430.86
754_D784_R2.0410.86
36_I143_I2.0320.85
460_R496_V2.0300.85
752_T757_Q2.0220.85
347_A350_P2.0180.85
271_D278_R2.0100.85
31_V107_D1.9960.84
461_A602_V1.9950.84
486_V489_F1.9940.84
473_P650_Q1.9920.84
219_S223_G1.9910.84
692_Y709_R1.9760.84
498_V509_A1.9550.83
383_L764_I1.9140.82
557_V561_T1.9060.81
273_E276_A1.8920.81
245_P254_C1.8710.80
115_I162_K1.8660.80
513_L624_L1.8650.80
708_D743_R1.8390.79
786_N791_R1.8390.79
256_Y268_G1.8380.79
257_C273_E1.8260.78
267_S278_R1.8130.78
790_S800_G1.8060.78
754_D761_K1.7980.77
273_E277_G1.7980.77
51_L439_R1.7730.76
762_E793_K1.7700.76
223_G226_E1.7420.75
257_C271_D1.7410.75
485_L489_F1.7320.75
768_F800_G1.7280.74
417_L710_V1.7240.74
726_E785_V1.7160.74
245_P481_T1.7110.74
734_R783_R1.6960.73
274_S279_I1.6920.73
653_S790_S1.6890.73
196_L199_K1.6870.73
713_V763_V1.6860.72
263_C271_D1.6790.72
496_V689_V1.6790.72
751_D755_R1.6680.72
608_E657_F1.6570.71
652_F656_E1.6540.71
709_R799_V1.6420.70
157_E161_G1.6290.70
689_V692_Y1.6160.69
263_C269_R1.6130.69
486_V490_V1.6050.69
148_D159_K1.6040.69
585_Q611_P1.6030.69
245_P257_C1.6030.69
685_V695_P1.6000.68
263_C273_E1.6000.68
706_E736_Q1.5920.68
429_T433_F1.5820.67
777_P781_D1.5790.67
42_C67_H1.5730.67
458_V485_L1.5680.67
521_I537_L1.5630.66
288_R765_V1.5610.66
426_Q430_D1.5560.66
70_F119_L1.5520.66
257_C267_S1.5520.66
651_A655_R1.5460.66
711_A743_R1.5430.65
602_V691_F1.5290.65
93_E809_P1.5270.65
784_R787_V1.5220.64
749_A761_K1.5180.64
39_F108_V1.5120.64
504_R759_S1.5110.64
159_K175_Q1.5090.64
133_E601_F1.5070.64
806_R812_D1.5060.63
757_Q787_V1.5020.63
327_V330_L1.5010.63
490_V557_V1.5000.63
651_A799_V1.4990.63
276_A279_I1.4900.63
416_A421_V1.4880.63
58_Y107_D1.4880.63
472_G477_G1.4850.62
472_G478_K1.4850.62
513_L793_K1.4850.62
274_S280_G1.4830.62
497_L642_Q1.4780.62
173_K214_P1.4770.62
451_N643_Y1.4730.62
435_R438_P1.4670.61
343_W350_P1.4630.61
756_F788_A1.4570.61
500_A505_A1.4550.61
24_V614_V1.4530.61
610_L645_M1.4500.60
267_S276_A1.4480.60
809_P816_D1.4440.60
500_A586_L1.4440.60
464_A468_A1.4380.60
728_G756_F1.4340.60
120_Q554_S1.4300.59
532_A535_Q1.4300.59
250_A268_G1.4280.59
59_P153_G1.4270.59
752_T787_V1.4240.59
44_R254_C1.4240.59
315_Q592_L1.4230.59
263_C274_S1.4230.59
195_L200_N1.4210.59
333_A387_R1.4160.59
487_Q580_V1.4150.59
273_E280_G1.4140.58
283_V287_E1.4140.58
784_R795_S1.4120.58
82_S91_G1.4090.58
94_L104_V1.4060.58
731_A769_V1.4030.58
343_W349_R1.4030.58
29_F91_G1.3990.58
270_L273_E1.3980.58
501_F586_L1.3860.57
126_D129_E1.3800.57
717_Y726_E1.3790.56
584_S734_R1.3770.56
183_L723_D1.3770.56
469_L625_F1.3730.56
142_G157_E1.3730.56
510_L559_A1.3720.56
560_A565_C1.3710.56
144_K643_Y1.3690.56
706_E767_S1.3680.56
404_Y586_L1.3650.56
707_A739_E1.3630.56
345_L348_T1.3610.55
732_P785_V1.3600.55
609_Q791_R1.3580.55
142_G161_G1.3570.55
646_S688_G1.3560.55
83_V713_V1.3540.55
728_G761_K1.3500.55
589_P642_Q1.3440.54
133_E142_G1.3430.54
346_T350_P1.3380.54
472_G475_G1.3350.54
143_I225_L1.3330.54
526_T798_L1.3320.54
256_Y522_V1.3320.54
753_V757_Q1.3320.54
726_E762_E1.3290.54
24_V535_Q1.3270.54
23_V29_F1.3270.54
626_E657_F1.3230.53
476_T611_P1.3190.53
274_S277_G1.3150.53
454_Q612_P1.3140.53
475_G478_K1.3140.53
431_L438_P1.3120.53
196_L200_N1.3080.52
725_G742_R1.3040.52
758_G791_R1.3020.52
624_L691_F1.3000.52
497_L624_L1.3000.52
751_D761_K1.3000.52
78_D82_S1.2990.52
762_E775_E1.2970.52
363_V713_V1.2950.52
433_F438_P1.2950.52
193_G197_Y1.2940.52
181_L454_Q1.2920.52
399_C402_D1.2910.51
42_C254_C1.2900.51
600_R762_E1.2900.51
270_L277_G1.2900.51
213_S217_E1.2890.51
730_I753_V1.2860.51
480_Y593_A1.2850.51
489_F576_D1.2760.51
534_M538_R1.2750.51
497_L575_F1.2740.50
144_K575_F1.2720.50
90_A93_E1.2720.50
103_E812_D1.2700.50
84_A105_E1.2680.50
789_L814_M1.2650.50
693_D802_E1.2650.50
765_V797_V1.2620.50
47_Y50_K1.2570.50
270_L275_K1.2530.49
494_D577_V1.2530.49
554_S765_V1.2530.49
48_L266_V1.2520.49
729_V765_V1.2520.49
465_E659_D1.2480.49
734_R751_D1.2440.49
454_Q457_A1.2410.49
736_Q767_S1.2340.48
269_R273_E1.2300.48
493_G500_A1.2300.48
217_E220_I1.2300.48
787_V792_A1.2270.48
474_P477_G1.2260.48
474_P478_K1.2260.48
451_N457_A1.2250.48
512_A665_A1.2250.48
267_S274_S1.2230.48
21_S646_S1.2220.47
609_Q787_V1.2210.47
754_D759_S1.2200.47
582_E644_R1.2200.47
812_D815_I1.2190.47
282_P287_E1.2190.47
263_C277_G1.2170.47
276_A280_G1.2160.47
294_L578_V1.2160.47
758_G787_V1.2130.47
471_H760_S1.2120.47
427_R430_D1.2100.47
722_L726_E1.2090.47
684_A687_G1.2080.47
341_G349_R1.2050.47
453_A456_A1.2000.46
510_L784_R1.1960.46
104_V108_V1.1900.46
474_P644_R1.1890.46
341_G350_P1.1880.46
495_R590_D1.1850.45
474_P582_E1.1850.45
608_E782_H1.1840.45
687_G690_T1.1830.45
135_T146_R1.1810.45
709_R742_R1.1810.45
86_R91_G1.1800.45
381_E553_R1.1790.45
198_T201_A1.1760.45
564_T592_L1.1740.45
24_V487_Q1.1700.45
31_V275_K1.1650.44
425_D428_R1.1590.44
501_F590_D1.1590.44
177_A526_T1.1560.44
612_P643_Y1.1530.44
404_Y410_V1.1520.43
55_P60_V1.1480.43
732_P753_V1.1480.43
432_L755_R1.1470.43
193_G481_T1.1470.43
229_V710_V1.1430.43
610_L662_L1.1410.43
24_V182_M1.1380.43
200_N729_V1.1370.43
710_V713_V1.1310.42
605_G644_R1.1300.42
606_D644_R1.1300.42
290_Y294_L1.1290.42
501_F565_C1.1290.42
722_L748_V1.1290.42
263_C268_G1.1280.42
197_Y721_G1.1260.42
582_E605_G1.1240.42
582_E606_D1.1240.42
650_Q654_S1.1240.42
143_I439_R1.1220.42
136_L158_L1.1210.42
480_Y584_S1.1200.42
402_D416_A1.1190.42
401_L404_Y1.1190.42
382_R387_R1.1180.42
31_V129_E1.1140.41
715_T747_G1.1130.41
730_I755_R1.1100.41
491_A715_T1.1100.41
392_T570_L1.1040.41
551_A602_V1.1020.41
158_L733_F1.1020.41
751_D759_S1.1020.41
802_E806_R1.1000.41
247_G267_S1.0970.40
474_P605_G1.0970.40
474_P606_D1.0970.40
155_P193_G1.0960.40
342_R347_A1.0950.40
79_L100_S1.0850.40
535_Q541_R1.0840.40
475_G609_Q1.0840.40
187_G190_A1.0780.39
34_T42_C1.0770.39
51_L532_A1.0770.39
752_T791_R1.0760.39
301_E507_D1.0740.39
293_E383_L1.0740.39
257_C274_S1.0740.39
657_F786_N1.0730.39
580_V603_L1.0730.39
784_R791_R1.0720.39
142_G601_F1.0710.39
357_I365_A1.0700.39
245_P493_G1.0700.39
350_P602_V1.0690.39
765_V812_D1.0690.39
657_F810_L1.0680.39
584_S653_S1.0670.39
390_V401_L1.0640.39
508_N784_R1.0640.39
574_E725_G1.0630.39
343_W348_T1.0630.39
219_S222_R1.0610.38
103_E110_D1.0600.38
142_G507_D1.0590.38
270_L274_S1.0570.38
40_V66_V1.0560.38
22_W815_I1.0520.38
768_F805_L1.0520.38
384_D554_S1.0510.38
749_A759_S1.0510.38
47_Y57_K1.0500.38
788_A791_R1.0490.38
205_R748_V1.0490.38
507_D589_P1.0480.38
63_G133_E1.0470.38
497_L625_F1.0460.38
172_D601_F1.0450.38
749_A760_S1.0450.38
496_V522_V1.0420.37
195_L497_L1.0420.37
814_M817_W1.0360.37
508_N788_A1.0330.37
754_D757_Q1.0300.37
161_G513_L1.0280.37
469_L507_D1.0270.37
327_V385_A1.0240.36
388_V401_L1.0240.36
469_L703_D1.0230.36
275_K280_G1.0170.36
514_R521_I1.0170.36
507_D611_P1.0160.36
298_I470_V1.0140.36
148_D175_Q1.0130.36
469_L595_I1.0130.36
274_S278_R1.0130.36
609_Q644_R1.0060.35
213_S218_F1.0060.35
142_G197_Y1.0050.35
37_R92_L1.0040.35
44_R48_L1.0020.35
582_E609_Q1.0020.35
655_R686_H1.0020.35
142_G223_G1.0010.35
249_E267_S1.0000.35
402_D405_P1.0000.35
65_I68_E0.9990.35
339_P347_A0.9980.35
227_F747_G0.9980.35
160_T470_V0.9970.35
578_V790_S0.9970.35
33_V56_L0.9950.35
83_V110_D0.9950.35
657_F782_H0.9940.35
257_C264_M0.9900.35
708_D716_A0.9890.35
652_F749_A0.9890.35
451_N592_L0.9870.34
37_R733_F0.9870.34
685_V693_D0.9850.34
507_D728_G0.9820.34
662_L733_F0.9820.34
44_R67_H0.9800.34
62_K66_V0.9790.34
694_V697_T0.9760.34
320_R325_R0.9750.34
291_F421_V0.9700.34
272_Q276_A0.9700.34
474_P609_Q0.9690.34
603_L767_S0.9690.34
272_Q278_R0.9680.34
53_G69_V0.9660.33
497_L703_D0.9650.33
256_Y271_D0.9640.33
340_D350_P0.9620.33
31_V696_G0.9620.33
25_V420_A0.9600.33
684_A690_T0.9580.33
142_G800_G0.9570.33
132_S508_N0.9570.33
257_C272_Q0.9550.33
509_A665_A0.9540.33
89_E351_G0.9520.33
752_T758_G0.9500.33
298_I322_A0.9480.32
31_V437_S0.9470.32
267_S271_D0.9460.32
427_R436_A0.9450.32
198_T751_D0.9440.32
42_C45_L0.9430.32
508_N761_K0.9410.32
31_V661_Q0.9400.32
345_L657_F0.9400.32
133_E157_E0.9380.32
265_V694_V0.9360.32
99_R103_E0.9350.32
117_G557_V0.9340.32
340_D346_T0.9340.32
225_L535_Q0.9330.32
343_W661_Q0.9320.32
141_F181_L0.9320.32
689_V694_V0.9300.32
484_T516_Q0.9290.32
653_S780_E0.9250.31
645_M805_L0.9250.31
55_P107_D0.9240.31
380_V383_L0.9230.31
339_P348_T0.9220.31
191_D194_T0.9200.31
24_V798_L0.9190.31
133_E138_S0.9190.31
482_I646_S0.9180.31
529_G588_E0.9170.31
623_S645_M0.9150.31
605_G609_Q0.9140.31
606_D609_Q0.9140.31
751_D754_D0.9140.31
195_L625_F0.9120.31
23_V69_V0.9110.31
766_V811_Y0.9090.31
23_V66_V0.9080.30
257_C261_D0.9050.30
182_M355_S0.9030.30
43_P59_P0.9030.30
743_R747_G0.9030.30
34_T761_K0.9020.30
223_G601_F0.9010.30
518_H557_V0.9000.30
475_G791_R0.8990.30
400_R404_Y0.8980.30
625_F642_Q0.8930.30
89_E106_A0.8930.30
539_L564_T0.8910.30
223_G467_F0.8910.30
179_Y581_D0.8880.30
632_Y765_V0.8860.29
138_S584_S0.8850.29
109_R116_E0.8850.29
149_A804_A0.8840.29
260_Q268_G0.8840.29
118_W203_V0.8840.29
766_V769_V0.8830.29
675_T683_G0.8790.29
633_P695_P0.8790.29
604_V642_Q0.8770.29
409_S744_T0.8770.29
431_L466_D0.8770.29
477_G581_D0.8770.29
478_K581_D0.8770.29
342_R345_L0.8760.29
757_Q791_R0.8760.29
341_G352_S0.8750.29
515_Q659_D0.8720.29
334_E381_E0.8710.29
49_N93_E0.8700.29
157_E223_G0.8690.29
336_T602_V0.8680.29
143_I750_V0.8670.29
611_P628_L0.8630.28
293_E692_Y0.8620.28
24_V720_A0.8620.28
472_G581_D0.8610.28
540_D713_V0.8610.28
801_D804_A0.8610.28
145_G175_Q0.8580.28
60_V64_T0.8560.28
67_H254_C0.8560.28
25_V76_G0.8550.28
272_Q279_I0.8550.28
179_Y477_G0.8540.28
179_Y478_K0.8540.28
136_L147_C0.8530.28
134_Y137_V0.8530.28
473_P613_V0.8510.28
65_I90_A0.8510.28
612_P795_S0.8500.28
617_G785_V0.8490.28
271_D274_S0.8490.28
195_L800_G0.8480.28
469_L497_L0.8480.28
809_P815_I0.8480.28
753_V756_F0.8450.28
61_T94_L0.8440.27
195_L199_K0.8420.27
728_G734_R0.8400.27
38_S49_N0.8390.27
475_G479_T0.8390.27
179_Y472_G0.8380.27
751_D756_F0.8350.27
225_L661_Q0.8340.27
260_Q271_D0.8340.27
570_L617_G0.8330.27
594_A604_V0.8330.27
345_L349_R0.8290.27
263_C270_L0.8290.27
115_I373_G0.8280.27
327_V486_V0.8280.27
685_V779_F0.8270.27
145_G159_K0.8270.27
162_K465_E0.8260.27
198_T688_G0.8240.27
157_E601_F0.8240.27
24_V88_D0.8240.27
132_S135_T0.8240.27
480_Y503_N0.8220.26
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348_T351_G0.5000.15
352_S789_L0.5000.15
595_I703_D0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4b3fX 1 0.6456 100 0.568 Contact Map
2xzlA 1 0.7613 100 0.638 Contact Map
2gk6A 1 0.62 100 0.642 Contact Map
2wjyA 1 0.7856 100 0.65 Contact Map
4pj3A 1 0.8685 100 0.73 Contact Map
3vkwA 1 0.5164 100 0.789 Contact Map
4n0nA 1 0.4738 100 0.803 Contact Map
3e1sA 1 0.5018 100 0.822 Contact Map
3upuA 1 0.3581 100 0.826 Contact Map
1w36D 1 0.5481 100 0.828 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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