GREMLIN Database
Q9HPQ5 - Htr8 transducer
UniProt: Q9HPQ5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 643 (506)
Sequences: 145 (132)
Seq/√Len: 5.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
466_L474_R4.9910.98
464_L481_G4.0830.94
473_A484_V3.7450.91
164_G188_G3.1610.81
133_H191_H3.1360.80
133_H163_H3.0590.79
447_I450_I2.9870.77
163_H191_H2.9030.75
601_Q615_L2.8340.73
196_L200_G2.6590.68
472_A484_V2.5740.65
479_G484_V2.5710.65
473_A479_G2.5270.63
500_A517_T2.4180.60
108_T112_S2.3610.58
294_L315_N2.3430.57
460_Q465_A2.3340.57
459_E470_I2.2520.54
137_F163_H2.2410.54
314_F392_A2.2370.54
472_A486_A2.2120.53
303_E469_N2.1930.52
409_A412_G2.1880.52
468_A486_A2.1630.51
377_V503_I2.1600.51
482_F492_L2.1420.50
467_N492_L2.1420.50
467_N471_E2.1420.50
471_E492_L2.1420.50
467_N482_F2.1420.50
471_E482_F2.1420.50
379_G382_T2.1150.49
375_E379_G2.0790.48
423_S495_E2.0470.47
376_T379_G2.0250.46
488_E503_I2.0240.46
500_A542_F2.0240.46
305_D494_E1.9670.44
166_F195_V1.9630.44
475_A486_A1.9360.43
476_D486_A1.8930.42
335_V364_A1.8900.41
398_V409_A1.8590.40
423_S426_V1.8240.39
500_A510_I1.8130.39
486_A492_L1.8090.39
482_F486_A1.8090.39
467_N486_A1.8090.39
471_E486_A1.8090.39
518_V559_I1.8050.39
447_I466_L1.8040.39
469_N490_K1.7930.38
483_A488_E1.7920.38
447_I451_V1.7880.38
137_F191_H1.7760.38
164_G175_Y1.7660.37
475_A483_A1.7370.36
131_E134_F1.7320.36
116_L122_L1.7230.36
531_A552_T1.7200.36
479_G483_A1.7070.35
81_I282_Y1.7040.35
473_A483_A1.6980.35
464_L474_R1.6970.35
466_L507_V1.6960.35
542_F568_A1.6960.35
470_I573_A1.6910.35
470_I510_I1.6890.35
360_V540_D1.6850.35
297_R461_T1.6780.34
482_F485_V1.6590.34
471_E485_V1.6590.34
485_V492_L1.6590.34
467_N485_V1.6590.34
155_G374_L1.6540.34
47_R91_G1.6460.33
484_V488_E1.6420.33
293_D398_V1.6350.33
464_L492_L1.6320.33
464_L482_F1.6320.33
464_L471_E1.6320.33
464_L467_N1.6320.33
58_L62_L1.6290.33
325_I545_V1.6240.33
463_M481_G1.6210.33
468_A481_G1.6170.33
470_I494_E1.6080.32
608_I615_L1.6050.32
474_R481_G1.6020.32
104_R119_S1.5970.32
512_A588_A1.5970.32
137_F174_V1.5890.32
191_H202_L1.5850.32
464_L468_A1.5830.31
474_R499_S1.5820.31
468_A492_L1.5760.31
468_A471_E1.5760.31
468_A482_F1.5760.31
290_A353_S1.5730.31
460_Q483_A1.5730.31
466_L488_E1.5690.31
453_L496_T1.5690.31
385_S496_T1.5620.31
321_T377_V1.5590.31
324_T549_A1.5580.31
130_I137_F1.5560.31
379_G383_D1.5470.30
377_V458_A1.5400.30
510_I539_V1.5390.30
315_N457_V1.5350.30
447_I507_V1.5230.30
146_Y149_W1.5160.29
450_I507_V1.5100.29
114_A480_D1.5060.29
447_I474_R1.5020.29
484_V493_A1.5000.29
450_I466_L1.5000.29
481_G492_L1.4990.29
467_N481_G1.4990.29
471_E481_G1.4990.29
317_M466_L1.4920.29
468_A472_A1.4890.29
452_D521_A1.4880.29
401_R418_Q1.4770.28
92_A319_D1.4710.28
382_T463_M1.4690.28
137_F141_A1.4670.28
392_A489_V1.4590.28
517_T594_A1.4480.28
289_A310_I1.4380.27
476_D479_G1.4350.27
318_L516_A1.4330.27
561_T589_A1.4300.27
472_A483_A1.4280.27
569_S580_V1.4240.27
100_P112_S1.4150.27
131_E176_N1.4040.26
454_I545_V1.3900.26
384_L398_V1.3550.25
528_V566_Q1.3540.25
373_K376_T1.3520.25
454_I457_V1.3510.25
507_V578_A1.3470.25
59_A512_A1.3440.25
381_M600_Q1.3350.24
470_I484_V1.3300.24
161_F199_A1.3180.24
134_F148_D1.3080.24
479_G482_F1.3070.24
467_N479_G1.3070.24
479_G492_L1.3070.24
471_E479_G1.3070.24
298_L524_A1.3050.24
466_L499_S1.3020.24
156_L196_L1.2950.23
481_G493_A1.2940.23
470_I514_M1.2880.23
512_A595_S1.2880.23
293_D390_E1.2850.23
500_A549_A1.2810.23
152_F195_V1.2780.23
496_T571_E1.2640.23
458_A461_T1.2640.23
184_P188_G1.2630.23
129_F134_F1.2590.23
467_N472_A1.2550.22
472_A492_L1.2550.22
472_A482_F1.2550.22
372_E376_T1.2550.22
476_D492_L1.2540.22
467_N476_D1.2540.22
471_E476_D1.2540.22
476_D482_F1.2540.22
464_L493_A1.2530.22
459_E571_E1.2500.22
308_A311_A1.2480.22
133_H174_V1.2450.22
551_E554_T1.2450.22
462_N472_A1.2390.22
461_T489_V1.2370.22
510_I528_V1.2320.22
50_V98_S1.2310.22
472_A475_A1.2300.22
131_E187_W1.2300.22
395_A545_V1.2250.22
559_I566_Q1.2250.22
313_S328_I1.2200.22
141_A163_H1.2200.22
90_V103_S1.2160.22
494_E517_T1.2150.22
475_A503_I1.2130.21
356_V368_D1.2100.21
542_F566_Q1.2100.21
580_V615_L1.2090.21
160_V219_R1.2070.21
306_A387_A1.2060.21
552_T594_A1.2050.21
381_M596_T1.2040.21
489_V495_E1.2010.21
360_V400_E1.2010.21
524_A542_F1.2010.21
51_L192_G1.1950.21
319_D332_A1.1930.21
464_L486_A1.1900.21
500_A513_Q1.1890.21
290_A295_S1.1880.21
565_D572_E1.1870.21
310_I380_E1.1820.21
174_V306_A1.1810.21
521_A535_V1.1670.20
370_Q423_S1.1650.20
150_L319_D1.1600.20
383_D551_E1.1600.20
303_E489_V1.1590.20
139_G333_S1.1590.20
458_A521_A1.1560.20
160_V191_H1.1470.20
468_A475_A1.1460.20
447_I499_S1.1450.20
191_H198_L1.1440.20
318_L598_A1.1410.20
473_A493_A1.1370.20
450_I490_K1.1370.20
325_I414_Q1.1360.20
355_Q502_D1.1350.20
377_V496_T1.1290.20
113_T165_V1.1290.20
474_R560_S1.1210.19
328_I548_N1.1200.19
237_Q241_E1.1190.19
472_A476_D1.1160.19
160_V163_H1.1080.19
294_L507_V1.1050.19
363_I454_I1.1040.19
468_A476_D1.0990.19
426_V524_A1.0940.19
379_G502_D1.0940.19
591_A608_I1.0890.19
496_T507_V1.0850.19
198_L470_I1.0850.19
475_A492_L1.0830.19
471_E475_A1.0830.19
475_A482_F1.0830.19
467_N475_A1.0830.19
297_R315_N1.0820.19
140_M463_M1.0810.18
279_A310_I1.0800.18
479_G493_A1.0790.18
462_N489_V1.0780.18
465_A482_F1.0770.18
465_A492_L1.0770.18
465_A471_E1.0770.18
480_D534_A1.0770.18
472_A479_G1.0750.18
447_I601_Q1.0740.18
84_A228_Q1.0710.18
464_L485_V1.0650.18
294_L447_I1.0630.18
297_R322_E1.0630.18
141_A506_L1.0580.18
85_A287_A1.0580.18
50_V56_L1.0490.18
517_T601_Q1.0480.18
510_I517_T1.0460.18
454_I475_A1.0460.18
128_G134_F1.0450.18
481_G486_A1.0440.18
535_V570_T1.0440.18
322_E331_V1.0440.18
175_Y188_G1.0400.18
462_N473_A1.0290.17
317_M548_N1.0280.17
489_V507_V1.0260.17
384_L409_A1.0230.17
463_M503_I1.0220.17
392_A395_A1.0200.17
604_A615_L1.0160.17
370_Q450_I1.0150.17
148_D163_H1.0110.17
171_A202_L1.0110.17
332_A421_A1.0090.17
412_G538_V1.0050.17
356_V367_A1.0020.17
500_A514_M1.0010.17
468_A485_V0.9990.17
59_A80_G0.9960.17
422_D514_M0.9950.17
426_V443_Q0.9940.17
133_H137_F0.9920.17
52_A63_Y0.9880.17
191_H489_V0.9870.17
457_V485_V0.9810.16
462_N465_A0.9800.16
136_F151_P0.9760.16
376_T383_D0.9760.16
470_I567_A0.9720.16
384_L423_S0.9720.16
381_M418_Q0.9690.16
177_H181_I0.9630.16
177_H188_G0.9570.16
56_L328_I0.9540.16
374_L587_T0.9520.16
467_N488_E0.9520.16
488_E492_L0.9520.16
482_F488_E0.9520.16
471_E488_E0.9520.16
297_R450_I0.9490.16
134_F177_H0.9470.16
570_T573_A0.9450.16
271_L298_L0.9450.16
579_E615_L0.9450.16
412_G560_S0.9440.16
352_A609_S0.9420.16
326_R407_A0.9410.16
327_E364_A0.9390.16
461_T490_K0.9340.16
123_V216_S0.9330.16
84_A293_D0.9320.16
521_A524_A0.9310.16
416_A489_V0.9310.16
292_G377_V0.9300.16
576_M590_D0.9290.15
115_V123_V0.9270.15
444_L605_A0.9240.15
481_G485_V0.9230.15
282_Y363_I0.9230.15
472_A503_I0.9210.15
426_V451_V0.9210.15
514_M517_T0.9190.15
368_D574_V0.9170.15
511_D600_Q0.9140.15
103_S558_E0.9130.15
233_L239_E0.9120.15
174_V179_A0.9120.15
483_A507_V0.9110.15
574_V591_A0.9090.15
101_S110_L0.9090.15
503_I609_S0.9070.15
520_E531_A0.9050.15
587_T594_A0.9020.15
555_G559_I0.8990.15
459_E601_Q0.8980.15
531_A566_Q0.8970.15
380_E569_S0.8970.15
94_V99_I0.8950.15
317_M456_D0.8950.15
96_L414_Q0.8940.15
402_S412_G0.8870.15
114_A120_V0.8840.15
129_F469_N0.8840.15
152_F572_E0.8830.15
133_H162_T0.8830.15
129_F187_W0.8820.15
482_F493_A0.8820.15
467_N493_A0.8820.15
471_E493_A0.8820.15
47_R551_E0.8810.15
335_V565_D0.8800.15
388_I423_S0.8760.15
57_L516_A0.8740.15
292_G493_A0.8730.14
219_R223_A0.8730.14
459_E517_T0.8720.14
388_I394_S0.8710.14
194_F205_N0.8680.14
84_A193_A0.8610.14
458_A486_A0.8600.14
483_A503_I0.8580.14
456_D489_V0.8580.14
234_E240_I0.8570.14
126_S131_E0.8570.14
51_L58_L0.8520.14
112_S128_G0.8520.14
158_Y480_D0.8510.14
409_A500_A0.8480.14
412_G426_V0.8460.14
479_G486_A0.8440.14
459_E500_A0.8420.14
324_T398_V0.8410.14
461_T465_A0.8400.14
160_V305_D0.8380.14
325_I523_T0.8380.14
367_A513_Q0.8360.14
319_D407_A0.8360.14
279_A380_E0.8360.14
203_M219_R0.8320.14
551_E562_T0.8320.14
511_D541_A0.8310.14
461_T473_A0.8220.14
528_V556_V0.8210.14
377_V451_V0.8180.14
88_G417_E0.8150.14
152_F328_I0.8150.14
514_M528_V0.8130.13
325_I584_S0.8120.13
458_A477_K0.8120.13
52_A114_A0.8080.13
191_H195_V0.8080.13
419_A462_N0.8070.13
470_I491_D0.8070.13
372_E574_V0.8070.13
605_A615_L0.8010.13
387_A474_R0.7960.13
111_A142_V0.7940.13
376_T452_D0.7930.13
129_F140_M0.7920.13
174_V191_H0.7920.13
448_S477_K0.7920.13
486_A503_I0.7910.13
238_A244_K0.7900.13
78_T82_L0.7890.13
470_I495_E0.7880.13
407_A418_Q0.7850.13
56_L384_L0.7840.13
332_A499_S0.7820.13
444_L454_I0.7820.13
198_L459_E0.7800.13
95_G99_I0.7800.13
224_R231_E0.7800.13
415_T426_V0.7760.13
141_A171_A0.7760.13
299_D524_A0.7750.13
496_T573_A0.7750.13
161_F337_A0.7740.13
325_I543_G0.7740.13
289_A577_I0.7730.13
117_A188_G0.7720.13
335_V495_E0.7690.13
372_E601_Q0.7690.13
133_H489_V0.7690.13
293_D315_N0.7680.13
353_S549_A0.7680.13
139_G526_E0.7670.13
470_I482_F0.7660.13
470_I492_L0.7660.13
467_N470_I0.7660.13
416_A615_L0.7620.13
506_L513_Q0.7610.13
454_I486_A0.7610.13
384_L550_E0.7610.13
105_R108_T0.7600.13
133_H198_L0.7580.13
591_A605_A0.7580.13
504_E567_A0.7570.13
138_V141_A0.7570.13
315_N447_I0.7540.13
388_I420_I0.7530.13
580_V608_I0.7530.13
455_S556_V0.7530.13
233_L237_Q0.7520.13
194_F545_V0.7470.12
382_T400_E0.7450.12
517_T528_V0.7440.12
388_I556_V0.7420.12
196_L219_R0.7420.12
412_G583_I0.7410.12
332_A542_F0.7410.12
480_D487_D0.7400.12
466_L483_A0.7390.12
134_F187_W0.7390.12
459_E466_L0.7380.12
164_G297_R0.7370.12
372_E416_A0.7370.12
459_E495_E0.7360.12
496_T560_S0.7360.12
84_A157_V0.7360.12
470_I591_A0.7320.12
193_A215_A0.7310.12
109_A114_A0.7310.12
175_Y191_H0.7290.12
387_A466_L0.7270.12
461_T510_I0.7260.12
294_L457_V0.7240.12
556_V599_E0.7220.12
288_R309_A0.7220.12
514_M566_Q0.7200.12
490_K580_V0.7200.12
397_S543_G0.7190.12
337_A516_A0.7190.12
167_G386_A0.7180.12
137_F159_V0.7170.12
211_R410_G0.7170.12
447_I528_V0.7150.12
567_A587_T0.7140.12
383_D490_K0.7140.12
384_L403_H0.7140.12
422_D500_A0.7140.12
378_S387_A0.7130.12
371_R571_E0.7130.12
51_L95_G0.7120.12
114_A497_R0.7110.12
318_L325_I0.7110.12
552_T566_Q0.7110.12
466_L484_V0.7110.12
469_N513_Q0.7100.12
500_A525_D0.7090.12
125_F198_L0.7080.12
459_E510_I0.7070.12
136_F163_H0.7040.12
125_F134_F0.7040.12
407_A519_T0.7010.12
454_I552_T0.7000.12
479_G485_V0.6990.12
195_V213_R0.6980.12
473_A492_L0.6950.12
467_N473_A0.6950.12
473_A482_F0.6950.12
158_Y164_G0.6920.12
314_F489_V0.6920.12
122_L144_A0.6920.12
488_E510_I0.6900.12
580_V597_A0.6890.12
457_V461_T0.6880.12
472_A488_E0.6860.12
99_I132_A0.6860.12
129_F151_P0.6830.11
367_A454_I0.6810.11
386_A588_A0.6810.11
451_V608_I0.6800.11
62_L110_L0.6800.11
50_V57_L0.6790.11
477_K490_K0.6780.11
400_E572_E0.6770.11
549_A576_M0.6760.11
363_I388_I0.6750.11
235_A355_Q0.6740.11
475_A484_V0.6720.11
465_A479_G0.6720.11
458_A562_T0.6710.11
458_A496_T0.6700.11
356_V370_Q0.6690.11
88_G100_P0.6690.11
131_E194_F0.6690.11
175_Y187_W0.6680.11
489_V514_M0.6670.11
468_A488_E0.6660.11
472_A485_V0.6650.11
476_D484_V0.6650.11
112_S402_S0.6620.11
82_L87_L0.6610.11
314_F560_S0.6610.11
462_N482_F0.6610.11
462_N467_N0.6610.11
462_N471_E0.6610.11
462_N492_L0.6610.11
470_I601_Q0.6520.11
143_I550_E0.6520.11
322_E390_E0.6520.11
469_N500_A0.6510.11
218_K328_I0.6510.11
517_T563_T0.6500.11
466_L481_G0.6470.11
123_V145_V0.6450.11
131_E146_Y0.6420.11
473_A489_V0.6410.11
328_I388_I0.6410.11
472_A493_A0.6410.11
52_A58_L0.6410.11
587_T615_L0.6400.11
117_A148_D0.6380.11
483_A495_E0.6380.11
364_A520_E0.6370.11
465_A507_V0.6360.11
362_E366_G0.6360.11
476_D485_V0.6360.11
359_T577_I0.6360.11
58_L445_A0.6350.11
100_P166_F0.6350.11
85_A142_V0.6340.11
138_V279_A0.6330.11
379_G501_G0.6320.11
411_D568_A0.6320.11
233_L241_E0.6300.11
49_F55_P0.6290.11
469_N491_D0.6290.11
131_E151_P0.6270.11
381_M581_S0.6260.11
326_R402_S0.6240.11
416_A443_Q0.6230.11
507_V608_I0.6230.11
47_R234_E0.6230.11
465_A486_A0.6220.11
319_D411_D0.6220.11
130_I134_F0.6210.11
367_A450_I0.6210.11
484_V492_L0.6210.11
471_E484_V0.6210.11
467_N484_V0.6210.11
483_A486_A0.6190.11
292_G328_I0.6190.11
474_R495_E0.6190.11
463_M473_A0.6180.11
423_S608_I0.6180.11
571_E582_D0.6170.11
133_H160_V0.6160.11
524_A534_A0.6160.11
465_A475_A0.6150.11
298_L559_I0.6150.11
321_T371_R0.6140.11
146_Y442_D0.6140.11
455_S495_E0.6120.11
328_I463_M0.6110.10
443_Q517_T0.6110.10
552_T560_S0.6090.10
542_F552_T0.6050.10
422_D528_V0.6030.10
273_E448_S0.6030.10
474_R500_A0.6030.10
542_F615_L0.5990.10
420_I514_M0.5990.10
184_P205_N0.5990.10
50_V107_R0.5980.10
502_D574_V0.5970.10
457_V473_A0.5960.10
135_H145_V0.5960.10
494_E605_A0.5960.10
62_L88_G0.5960.10
372_E583_I0.5960.10
280_N444_L0.5950.10
494_E532_I0.5940.10
89_I99_I0.5910.10
375_E451_V0.5900.10
288_R296_V0.5890.10
134_F469_N0.5870.10
560_S605_A0.5860.10
469_N484_V0.5860.10
146_Y213_R0.5840.10
103_S322_E0.5830.10
475_A479_G0.5830.10
470_I481_G0.5820.10
81_I84_A0.5810.10
326_R384_L0.5810.10
466_L473_A0.5800.10
523_T544_T0.5790.10
464_L470_I0.5790.10
460_Q475_A0.5790.10
526_E530_D0.5780.10
112_S118_S0.5780.10
87_L288_R0.5770.10
48_V56_L0.5750.10
88_G210_E0.5730.10
236_R243_E0.5730.10
472_A496_T0.5720.10
236_R240_I0.5710.10
490_K567_A0.5710.10
457_V462_N0.5700.10
377_V521_A0.5690.10
475_A507_V0.5670.10
290_A308_A0.5660.10
538_V562_T0.5660.10
317_M416_A0.5650.10
147_E175_Y0.5650.10
109_A126_S0.5650.10
134_F163_H0.5630.10
153_A281_T0.5630.10
357_S548_N0.5620.10
412_G542_F0.5620.10
239_E399_A0.5620.10
85_A119_S0.5590.10
328_I562_T0.5570.10
79_P85_A0.5560.10
131_E469_N0.5540.10
103_S116_L0.5530.10
235_A239_E0.5530.10
49_F57_L0.5530.10
282_Y527_S0.5520.10
297_R513_Q0.5520.10
423_S466_L0.5500.10
591_A601_Q0.5480.10
566_Q587_T0.5480.10
292_G494_E0.5450.10
52_A55_P0.5450.10
473_A478_S0.5430.10
378_S563_T0.5420.10
81_I231_E0.5420.10
375_E478_S0.5420.10
134_F463_M0.5410.10
464_L472_A0.5410.10
66_T305_D0.5410.10
355_Q377_V0.5400.10
153_A288_R0.5400.10
297_R314_F0.5390.10
465_A481_G0.5380.10
557_Q587_T0.5380.10
306_A489_V0.5380.10
489_V499_S0.5370.10
443_Q573_A0.5360.10
59_A62_L0.5350.10
84_A546_A0.5350.10
374_L500_A0.5350.10
90_V118_S0.5350.10
478_S546_A0.5330.10
138_V412_G0.5330.10
54_I91_G0.5330.10
371_R552_T0.5330.10
223_A558_E0.5330.10
457_V482_F0.5330.10
457_V492_L0.5330.10
192_G202_L0.5330.10
457_V471_E0.5330.10
310_I444_L0.5330.10
457_V467_N0.5330.10
367_A447_I0.5320.09
92_A478_S0.5320.09
46_V87_L0.5310.09
323_T334_D0.5310.09
518_V546_A0.5310.09
418_Q457_V0.5290.09
478_S522_R0.5290.09
371_R377_V0.5270.09
292_G359_T0.5260.09
451_V517_T0.5250.09
367_A385_S0.5250.09
229_Q241_E0.5250.09
54_I101_S0.5240.09
531_A542_F0.5240.09
426_V551_E0.5240.09
160_V192_G0.5230.09
363_I601_Q0.5220.09
76_P575_S0.5220.09
131_E162_T0.5220.09
386_A459_E0.5210.09
134_F191_H0.5210.09
454_I503_I0.5200.09
163_H174_V0.5200.09
206_W209_T0.5190.09
222_E328_I0.5180.09
500_A566_Q0.5180.09
480_D523_T0.5170.09
114_A132_A0.5170.09
130_I547_E0.5170.09
481_G484_V0.5170.09
521_A549_A0.5150.09
54_I219_R0.5150.09
609_S615_L0.5140.09
514_M525_D0.5140.09
138_V163_H0.5120.09
456_D487_D0.5120.09
164_G288_R0.5120.09
500_A573_A0.5120.09
310_I416_A0.5120.09
374_L474_R0.5110.09
360_V372_E0.5090.09
161_F388_I0.5080.09
235_A244_K0.5080.09
521_A538_V0.5070.09
92_A287_A0.5060.09
493_A503_I0.5060.09
121_V586_A0.5050.09
110_L538_V0.5040.09
464_L479_G0.5040.09
126_S129_F0.5030.09
380_E490_K0.5030.09
117_A120_V0.5030.09
506_L573_A0.5030.09
462_N468_A0.5020.09
363_I455_S0.5010.09
366_G576_M0.5000.09
120_V165_V0.5000.09
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zx6A 2 0.4712 100 0.59 Contact Map
2ch7A 2 0.4806 100 0.657 Contact Map
1qu7A 2 0.353 100 0.667 Contact Map
3g67A 2 0.325 100 0.728 Contact Map
4i3mA 2 0.2286 99.9 0.85 Contact Map
3zccA 2 0.1695 98.6 0.93 Contact Map
2f95B 2 0.0793 98.2 0.937 Contact Map
2rm8A 1 0.1058 98.1 0.938 Contact Map
4gycB 2 0.0933 97.7 0.944 Contact Map
4cq4A 4 0.1602 97.4 0.947 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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