GREMLIN Database
Q9HPM2 - Cobalamin biosynthesis protein
UniProt: Q9HPM2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1234 (1125)
Sequences: 976 (553)
Seq/√Len: 16.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
297_N300_K10.5511.00
295_L466_D10.0151.00
503_V792_A9.6481.00
791_D796_E6.2991.00
134_Q284_S5.9591.00
84_Y125_D5.8441.00
207_G796_E5.7331.00
885_V939_V5.4591.00
1116_E1161_R5.3301.00
945_P948_M5.3071.00
946_H956_E5.2781.00
296_D299_E5.0371.00
1002_R1069_A4.6421.00
639_L1117_D4.5861.00
886_R899_E4.5021.00
351_Q1168_V4.5011.00
847_R1096_E4.4931.00
171_V174_V4.4521.00
900_P942_L4.3771.00
939_V942_L4.3271.00
331_L789_T4.1831.00
302_V335_L4.1201.00
898_V938_A4.0581.00
1065_I1078_S3.8931.00
1162_Q1166_R3.8001.00
952_K956_E3.7271.00
1027_H1031_E3.6871.00
207_G791_D3.6861.00
328_T471_L3.6421.00
883_M936_V3.6361.00
278_R494_D3.5511.00
857_E953_K3.4730.99
1137_D1148_W3.4460.99
386_Y450_H3.3330.99
350_G354_I3.3010.99
106_T137_N3.2970.99
917_V929_A3.2970.99
390_W402_V3.2640.99
220_R224_E3.2370.99
126_G274_P3.2030.99
109_V128_V3.1850.99
879_V915_T3.1790.99
903_L948_M3.1200.99
635_T1104_A3.1070.99
172_D294_H3.0700.99
860_G1064_F3.0560.99
288_N291_R3.0430.99
852_E1077_A3.0240.99
900_P938_A2.9930.98
130_A283_A2.9330.98
468_V500_L2.8910.98
849_Q855_Y2.8870.98
653_L780_F2.8860.98
854_E857_E2.8860.98
661_T771_I2.8540.98
211_L250_T2.8490.98
284_S288_N2.8120.98
1157_F1198_R2.8090.98
834_W877_A2.7960.98
334_E786_I2.7920.98
366_R1174_S2.7830.97
389_W457_A2.7510.97
915_T932_V2.7450.97
883_M951_V2.6790.97
330_N646_E2.6740.97
1152_A1157_F2.6710.97
879_V932_V2.6470.97
900_P939_V2.6220.96
175_V213_T2.6160.96
1151_V1180_L2.5820.96
467_A793_L2.5770.96
300_K794_D2.5300.95
106_T139_L2.5280.95
109_V131_L2.5090.95
331_L471_L2.5010.95
172_D293_R2.4910.95
417_G424_L2.4890.95
291_R295_L2.4760.95
678_V764_L2.4750.95
774_E778_R2.4530.95
92_D95_G2.4470.95
173_A290_A2.4440.95
835_D838_K2.4370.94
220_R275_I2.4320.94
382_S385_E2.4250.94
385_E462_E2.4180.94
334_E338_R2.4180.94
239_V485_V2.4040.94
515_T822_T2.4010.94
351_Q355_E2.4010.94
1126_L1176_I2.3860.94
402_V407_E2.3800.94
1184_I1196_A2.3720.94
1010_V1031_E2.3700.94
62_G68_T2.3650.93
488_D491_S2.3450.93
42_V57_C2.3090.93
338_R794_D2.3050.93
108_A163_L2.2980.92
87_D129_H2.2960.92
330_N333_D2.2930.92
546_E633_K2.2880.92
861_V879_V2.2880.92
1201_D1205_Q2.2840.92
797_Y800_P2.2580.92
109_V127_V2.2400.91
789_T792_A2.2330.91
173_A286_A2.2270.91
453_Y496_L2.1900.90
163_L171_V2.1780.90
252_P486_G2.1640.90
503_V789_T2.1560.90
274_P279_V2.1550.90
1192_D1195_T2.1430.89
300_K466_D2.1280.89
1069_A1075_E2.1200.89
860_G1037_V2.0940.88
723_G727_P2.0940.88
395_P399_A2.0910.88
838_K842_D2.0860.88
128_V140_P2.0820.88
1069_A1140_T2.0690.88
1028_D1031_E2.0570.87
847_R851_D2.0100.86
534_S1110_E1.9970.86
1009_Y1030_F1.9960.86
1099_R1144_S1.9920.86
338_R790_A1.9880.85
349_E352_A1.9690.85
387_A391_A1.9610.85
331_L644_M1.9480.84
698_G701_Y1.9460.84
426_T455_F1.9300.84
82_G142_F1.9300.84
301_R464_G1.9220.83
1149_A1153_E1.9170.83
391_A398_R1.9160.83
460_R499_D1.9060.83
107_V136_A1.8950.83
108_A174_V1.8880.82
1002_R1140_T1.8780.82
1107_L1147_L1.8570.81
289_W503_V1.8520.81
940_V955_V1.8500.81
775_A811_V1.8490.81
250_T282_A1.8380.81
914_T1033_R1.8040.79
107_V173_A1.8040.79
1010_V1027_H1.8030.79
200_D797_Y1.8000.79
390_W398_R1.7980.79
302_V974_A1.7960.79
576_A581_A1.7880.79
288_N466_D1.7860.79
846_Q850_E1.7750.78
323_D1118_H1.7740.78
689_S692_E1.7720.78
1156_A1202_L1.7630.78
432_G988_A1.7540.77
1116_E1160_D1.7490.77
136_A290_A1.7430.77
1092_Y1100_K1.7420.77
297_N794_D1.7370.77
108_A171_V1.7360.76
130_A280_E1.7330.76
1159_E1202_L1.7290.76
288_N300_K1.7230.76
932_V936_V1.7220.76
10_R14_A1.7180.76
207_G794_D1.7060.75
385_E388_A1.6960.75
781_G784_S1.6880.74
917_V980_T1.6850.74
396_E490_E1.6760.74
844_V1041_V1.6750.74
126_G279_V1.6730.74
1159_E1162_Q1.6710.74
997_G1178_D1.6700.74
675_V719_L1.6690.74
1157_F1195_T1.6530.73
432_G444_S1.6460.72
302_V467_A1.6450.72
709_Y718_T1.6420.72
337_A425_V1.6400.72
108_A141_V1.6340.72
139_L171_V1.6310.72
423_V463_F1.6250.71
1163_E1167_D1.6240.71
1026_A1029_A1.6220.71
1196_A1200_R1.6210.71
55_A59_R1.6180.71
34_V38_D1.6070.71
326_E330_N1.5930.70
304_V469_V1.5880.70
315_G473_T1.5860.70
10_R16_V1.5840.69
934_D1019_S1.5820.69
215_T253_I1.5800.69
1207_S1211_E1.5730.69
257_E273_F1.5700.69
109_V849_Q1.5520.68
509_N865_G1.5500.68
960_A964_A1.5490.68
709_Y715_L1.5410.67
134_Q287_V1.5400.67
400_N492_A1.5400.67
341_S422_N1.5310.67
837_G841_A1.5120.66
982_R1015_Y1.5110.66
784_S787_P1.5100.66
1149_A1192_D1.5080.66
148_D549_A1.5060.65
131_L283_A1.5050.65
45_Y60_F1.5050.65
387_A399_A1.5030.65
303_A468_V1.4980.65
652_R1117_D1.4940.65
1010_V1071_E1.4840.64
277_D489_A1.4690.63
101_D137_N1.4680.63
473_T510_N1.4680.63
658_V727_P1.4660.63
723_G726_V1.4590.63
788_Q791_D1.4550.63
132_E138_A1.4510.62
710_E714_D1.4500.62
248_V524_A1.4500.62
840_V1083_S1.4500.62
485_V945_P1.4480.62
84_Y128_V1.4450.62
951_V955_V1.4400.62
11_L16_V1.4400.62
335_L385_E1.4330.61
859_V911_I1.4310.61
15_G391_A1.4250.61
1055_S1068_V1.4150.60
1080_V1136_W1.4150.60
988_A1012_W1.4110.60
720_A723_G1.4100.60
219_S420_Y1.4100.60
172_D796_E1.4010.60
527_D820_F1.4010.60
1050_D1101_A1.4000.60
1130_V1176_I1.3970.59
993_A1008_V1.3970.59
207_G293_R1.3960.59
396_E400_N1.3960.59
100_F137_N1.3950.59
506_Y510_N1.3930.59
798_V1159_E1.3900.59
20_V27_Y1.3880.59
714_D727_P1.3860.59
334_E790_A1.3850.59
56_N73_D1.3840.59
348_P352_A1.3830.59
710_E723_G1.3810.58
281_H494_D1.3800.58
249_I285_L1.3790.58
48_R77_A1.3780.58
297_N338_R1.3760.58
34_V39_R1.3760.58
286_A1151_V1.3740.58
697_L701_Y1.3720.58
709_Y713_V1.3710.58
32_T39_R1.3640.57
1149_A1195_T1.3610.57
1127_S1172_A1.3610.57
211_L286_A1.3580.57
312_S845_A1.3540.57
792_A1141_G1.3500.57
857_E954_H1.3490.57
485_V1001_D1.3460.56
31_D800_P1.3450.56
109_V342_L1.3410.56
277_D494_D1.3310.56
404_E447_Q1.3280.55
1162_Q1202_L1.3270.55
319_A324_T1.3190.55
107_V1196_A1.3180.55
930_G1020_R1.3170.55
98_A133_S1.3160.55
9_A13_D1.3160.55
1153_E1157_F1.3140.55
1197_E1200_R1.3130.55
862_V1042_K1.3070.54
1165_L1176_I1.3070.54
1181_L1199_L1.3030.54
125_D1069_A1.3020.54
253_I279_V1.2980.54
253_I936_V1.2980.54
83_V526_V1.2980.54
479_W516_Q1.2950.53
35_A38_D1.2910.53
1133_T1151_V1.2910.53
216_T427_V1.2890.53
302_V764_L1.2790.53
575_V625_V1.2760.52
671_L676_A1.2750.52
51_S108_A1.2730.52
41_T74_D1.2700.52
617_G620_A1.2690.52
197_A335_L1.2610.51
342_L997_G1.2610.51
128_V138_A1.2540.51
994_V1135_G1.2510.51
717_E720_A1.2470.51
431_R480_L1.2410.50
762_D929_A1.2400.50
45_Y254_S1.2390.50
308_N1034_L1.2380.50
993_A998_E1.2380.50
85_H132_E1.2360.50
177_S364_D1.2360.50
73_D335_L1.2340.50
131_L136_A1.2290.50
695_E698_G1.2270.49
63_D72_Y1.2270.49
715_L718_T1.2260.49
45_Y56_N1.2230.49
674_S678_V1.2230.49
390_W911_I1.2190.49
147_T471_L1.2120.49
293_R336_D1.2090.48
342_L345_K1.2080.48
288_N302_V1.2070.48
381_V415_I1.2050.48
296_D302_V1.2030.48
86_P129_H1.2020.48
41_T75_P1.2020.48
103_D137_N1.2010.48
174_V206_L1.1940.48
649_A1159_E1.1940.48
1055_S1059_A1.1910.47
463_F498_G1.1910.47
860_G878_Q1.1890.47
883_M1095_E1.1880.47
278_R856_P1.1880.47
990_T995_D1.1870.47
240_A515_T1.1860.47
879_V936_V1.1860.47
394_D490_E1.1770.47
801_G847_R1.1720.46
118_H845_A1.1660.46
390_W401_V1.1640.46
1150_D1153_E1.1630.46
19_V61_L1.1620.46
990_T994_V1.1610.46
110_W301_R1.1570.45
468_V1090_D1.1570.45
408_P798_V1.1560.45
1171_W1185_E1.1530.45
332_L342_L1.1510.45
11_L17_P1.1490.45
828_V928_A1.1460.45
940_V951_V1.1450.45
885_V898_V1.1450.45
102_P137_N1.1440.45
491_S813_L1.1440.45
1069_A1141_G1.1430.45
1014_G1027_H1.1420.44
714_D723_G1.1410.44
502_N521_S1.1400.44
509_N1045_D1.1400.44
885_V936_V1.1390.44
776_A780_F1.1390.44
134_Q283_A1.1380.44
336_D1074_A1.1370.44
379_D415_I1.1350.44
219_S222_R1.1330.44
671_L674_S1.1330.44
1058_Y1135_G1.1320.44
125_D951_V1.1310.44
350_G500_L1.1280.44
300_K937_D1.1270.44
1152_A1180_L1.1250.44
289_W524_A1.1250.44
845_A859_V1.1210.43
1194_E1198_R1.1190.43
994_V1058_Y1.1170.43
254_S1155_Y1.1170.43
871_T874_E1.1160.43
672_R719_L1.1150.43
479_W1056_D1.1120.43
466_D1176_I1.1120.43
1159_E1163_E1.1110.43
362_T1084_S1.1050.42
142_F174_V1.1040.42
1003_S1070_E1.1030.42
477_L521_S1.1020.42
710_E713_V1.1000.42
936_V978_V1.0980.42
555_A567_I1.0980.42
1137_D1145_D1.0960.42
83_V139_L1.0950.42
16_V20_V1.0890.41
1112_L1116_E1.0880.41
302_V316_I1.0870.41
211_L1158_D1.0860.41
397_F495_A1.0850.41
516_Q1131_D1.0850.41
851_D1077_A1.0850.41
554_E901_I1.0810.41
83_V469_V1.0800.41
295_L300_K1.0800.41
673_E684_G1.0780.41
784_S788_Q1.0770.41
422_N463_F1.0750.41
317_G832_T1.0730.41
283_A290_A1.0710.40
720_A726_V1.0710.40
1186_R1211_E1.0690.40
317_G1064_F1.0680.40
441_Y1134_L1.0620.40
221_S224_E1.0620.40
104_A132_E1.0580.40
356_Q418_V1.0570.40
972_Q975_K1.0570.40
45_Y856_P1.0560.40
842_D846_Q1.0560.40
425_V937_D1.0550.40
335_L1112_L1.0530.39
911_I950_Y1.0520.39
57_C1064_F1.0520.39
425_V485_V1.0510.39
468_V900_P1.0500.39
381_V389_W1.0500.39
701_Y705_A1.0490.39
866_T1053_D1.0450.39
393_T495_A1.0420.39
514_G820_F1.0410.39
767_V1176_I1.0390.39
468_V497_L1.0390.39
334_E787_P1.0370.39
868_T928_A1.0360.38
12_A18_L1.0350.38
860_G1009_Y1.0330.38
201_V526_V1.0300.38
805_A1084_S1.0260.38
1107_L1150_D1.0240.38
224_E688_D1.0200.38
582_V587_E1.0190.38
657_L845_A1.0190.38
556_G564_E1.0180.37
214_V249_I1.0180.37
686_M898_V1.0180.37
20_V940_V1.0180.37
1007_D1027_H1.0180.37
239_V855_Y1.0160.37
295_L1067_A1.0150.37
398_R402_V1.0140.37
431_R452_Y1.0140.37
651_D655_E1.0130.37
252_P1151_V1.0080.37
287_V291_R1.0070.37
331_L334_E1.0060.37
713_V727_P1.0060.37
388_A794_D1.0060.37
453_Y495_A1.0040.37
403_A794_D1.0030.37
301_R312_S1.0030.37
313_D362_T1.0010.37
384_D1007_D1.0000.36
473_T525_V0.9990.36
55_A141_V0.9990.36
1106_V1151_V0.9990.36
534_S637_I0.9990.36
329_V350_G0.9980.36
130_A134_Q0.9970.36
943_D946_H0.9960.36
323_D882_L0.9940.36
42_V533_M0.9930.36
356_Q420_Y0.9930.36
982_R988_A0.9910.36
175_V354_I0.9910.36
511_P803_S0.9900.36
18_L851_D0.9890.36
714_D726_V0.9890.36
1037_V1068_V0.9880.36
684_G716_V0.9880.36
321_G638_R0.9870.36
534_S655_E0.9860.36
295_L299_E0.9860.36
42_V996_E0.9840.36
52_A56_N0.9840.36
1085_D1088_N0.9830.36
434_G996_E0.9820.35
933_H937_D0.9800.35
358_T1091_V0.9790.35
113_E498_G0.9790.35
298_D526_V0.9780.35
1113_D1116_E0.9760.35
695_E701_Y0.9760.35
484_T1206_V0.9760.35
121_T398_R0.9750.35
208_V798_V0.9750.35
1077_A1093_T0.9740.35
457_A461_E0.9740.35
1153_E1195_T0.9720.35
1186_R1207_S0.9710.35
299_E1144_S0.9710.35
1105_R1111_W0.9690.35
994_V997_G0.9690.35
61_L1201_D0.9670.35
711_T714_D0.9660.35
537_G540_D0.9650.35
406_G450_H0.9640.35
295_L773_E0.9630.34
1207_S1210_L0.9610.34
1200_R1211_E0.9600.34
280_E396_E0.9590.34
1193_D1197_E0.9590.34
529_L782_A0.9560.34
673_E676_A0.9560.34
626_H1164_W0.9560.34
709_Y714_D0.9560.34
1106_V1180_L0.9550.34
27_Y31_D0.9550.34
847_R892_A0.9530.34
500_L876_I0.9510.34
473_T527_D0.9500.34
473_T506_Y0.9490.34
225_S978_V0.9490.34
425_V1030_F0.9480.34
1107_L1151_V0.9460.34
300_K766_A0.9460.34
722_E727_P0.9460.34
235_L1002_R0.9460.34
1044_E1080_V0.9440.33
788_Q796_E0.9430.33
146_A178_F0.9420.33
432_G437_P0.9420.33
1106_V1129_T0.9410.33
538_T1064_F0.9410.33
690_P716_V0.9390.33
445_D988_A0.9380.33
682_D1167_D0.9380.33
342_L542_L0.9370.33
80_T148_D0.9370.33
476_S938_A0.9370.33
946_H1113_D0.9360.33
279_V830_A0.9350.33
1078_S1091_V0.9340.33
885_V901_I0.9330.33
317_G1072_S0.9320.33
342_L418_V0.9300.33
516_Q1056_D0.9300.33
282_A791_D0.9300.33
535_N633_K0.9290.33
18_L1205_Q0.9290.33
239_V859_V0.9280.33
1047_M1097_K0.9260.33
1052_F1098_V0.9250.32
335_L420_Y0.9250.32
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180_F362_T0.5020.15
241_L826_R0.5020.15
571_I715_L0.5020.15
334_E1038_D0.5020.15
835_D854_E0.5020.15
125_D1075_E0.5020.15
809_G1097_K0.5020.15
142_F1199_L0.5020.15
288_N333_D0.5010.15
300_K1022_R0.5010.15
138_A360_Q0.5010.15
362_T1046_T0.5000.15
34_V107_V0.5000.15
415_I897_D0.5000.15
886_R1007_D0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4yo7A 1 0.205 38.7 0.992 Contact Map
2bv6A 2 0.0972 37.8 0.993 Contact Map
1sfxA 3 0.0875 36.1 0.993 Contact Map
3nkzA 4 0.0592 35.7 0.993 Contact Map
2b8iA 1 0.0624 31.7 0.993 Contact Map
4bhqA 2 0.0713 28.8 0.993 Contact Map
3o74A 2 0.201 28.4 0.993 Contact Map
3lzdA 2 0.1613 28.2 0.993 Contact Map
2yv4A 1 0.077 28 0.993 Contact Map
3a7mA 2 0.0559 25 0.993 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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