Q9HPM0 - HALSA - GREMLIN Contacts

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Q9HPM0 - Precorrin-3 methylase

UniProt:	Q9HPM0	Sequences: MSEEYDLDSGPDPASFAAQTPEPAAGDHAVHAVGIGPGNPAFLTARGERAIRDAEVIVGFETVVEFVADLTDADLLTCGYRDEQAALSAFGERVADGARGTAVLMGDPNHSGYQFLGKVERAVGEPVRVVPGISSLQVAASRARTPMEDTTFVTLHKSGDVSDGVARLRDAVGDRHLLVLPRPFDLMPGDIAADLLEAADAAPDLDALVLERLTHDDESITRTTLGELAAHAGEETPFSDLSVLAVRRSA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	250 (216)
Sequences:	13066 (8213)
Seq/√Len:	558.8

ECOLI - CYSG RSMI
BACSU - NASF SUMT RSMI
HALSA - Q9HPM0 Q9HPN2 Q9HPM9 Q9HMY4 Q9HPN0 Q9HPN3
SULSO - Q97W12 Q97WD1 Q97WC9 Q97WC5 Q97UT5 Q97WC8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
41_A	49_R	3.899	1.00
48_E	52_R	3.440	1.00
31_H	50_A	2.656	1.00
93_R	98_A	2.640	1.00
142_R	218_E	2.634	1.00
211_E	219_S	2.579	1.00
29_A	128_R	2.558	1.00
223_T	227_E	2.543	1.00
54_A	101_T	2.534	1.00
203_P	226_G	2.475	1.00
29_A	126_P	2.390	1.00
49_R	53_D	2.299	1.00
74_D	93_R	2.277	1.00
64_V	103_V	2.232	1.00
33_V	101_T	2.217	1.00
45_A	48_E	2.110	1.00
139_A	213_L	2.104	1.00
31_H	99_R	2.061	1.00
135_S	181_P	2.057	1.00
206_D	247_R	2.053	1.00
224_T	227_E	2.046	1.00
55_E	99_R	2.024	1.00
210_L	213_L	2.023	1.00
33_V	47_G	2.000	1.00
95_A	123_V	1.961	1.00
212_R	217_D	1.948	1.00
223_T	231_H	1.907	1.00
55_E	98_A	1.812	1.00
93_R	96_D	1.778	1.00
34_G	130_V	1.755	1.00
167_R	170_D	1.755	1.00
29_A	99_R	1.737	1.00
91_G	123_V	1.710	1.00
207_A	228_L	1.705	1.00
50_A	130_V	1.665	1.00
56_V	93_R	1.658	1.00
41_A	46_R	1.632	1.00
49_R	52_R	1.610	1.00
31_H	128_R	1.583	1.00
65_E	69_D	1.582	1.00
210_L	220_I	1.574	1.00
92_E	96_D	1.506	1.00
227_E	231_H	1.496	1.00
192_A	196_L	1.487	1.00
223_T	228_L	1.472	1.00
46_R	128_R	1.437	1.00
169_R	197_E	1.431	1.00
201_A	205_L	1.431	1.00
142_R	220_I	1.418	1.00
39_N	46_R	1.417	1.00
194_D	197_E	1.413	1.00
89_A	93_R	1.408	1.00
134_S	137_Q	1.407	1.00
143_A	208_L	1.405	1.00
164_G	194_D	1.389	1.00
139_A	210_L	1.383	1.00
43_L	48_E	1.374	1.00
136_L	181_P	1.367	1.00
53_D	99_R	1.364	1.00
95_A	125_E	1.351	1.00
212_R	215_H	1.342	1.00
204_D	226_G	1.334	1.00
88_S	92_E	1.327	1.00
89_A	92_E	1.316	1.00
59_G	75_L	1.309	1.00
151_T	176_H	1.307	1.00
134_S	181_P	1.306	1.00
192_A	229_A	1.295	1.00
231_H	236_T	1.292	1.00
74_D	98_A	1.283	1.00
34_G	107_D	1.282	1.00
169_R	198_A	1.270	1.00
91_G	95_A	1.269	1.00
57_I	71_T	1.236	1.00
109_N	114_Q	1.228	1.00
180_L	246_V	1.224	1.00
61_E	81_R	1.222	1.00
94_V	125_E	1.219	1.00
208_L	222_R	1.207	1.00
129_V	141_S	1.205	1.00
30_V	94_V	1.196	1.00
79_G	82_D	1.172	1.00
231_H	235_E	1.170	1.00
221_T	231_H	1.163	1.00
207_A	225_L	1.161	1.00
48_E	70_L	1.157	1.00
187_M	190_D	1.140	1.00
230_A	235_E	1.132	1.00
179_V	245_A	1.131	1.00
63_V	66_F	1.128	1.00
50_A	101_T	1.126	1.00
209_V	242_S	1.122	1.00
195_L	225_L	1.121	1.00
189_G	193_A	1.104	1.00
58_V	90_F	1.104	1.00
58_V	100_G	1.103	1.00
196_L	203_P	1.097	1.00
196_L	226_G	1.095	1.00
188_P	232_A	1.093	1.00
85_A	88_S	1.084	1.00
43_L	47_G	1.081	1.00
44_T	133_I	1.068	1.00
58_V	76_L	1.041	1.00
193_A	197_E	1.031	1.00
47_G	130_V	1.030	1.00
56_V	100_G	1.026	1.00
86_A	89_A	1.026	1.00
169_R	194_D	1.015	1.00
189_G	234_E	1.012	1.00
165_V	194_D	1.010	1.00
194_D	198_A	1.009	1.00
152_F	157_K	1.003	1.00
208_L	220_I	1.002	1.00
107_D	141_S	1.001	1.00
195_L	246_V	0.992	1.00
34_G	108_P	0.992	1.00
169_R	173_G	0.991	1.00
42_F	46_R	0.990	1.00
156_H	167_R	0.976	1.00
190_D	193_A	0.973	1.00
209_V	232_A	0.970	1.00
31_H	54_A	0.967	1.00
138_V	214_T	0.962	1.00
238_F	242_S	0.958	1.00
211_E	239_S	0.956	1.00
66_F	69_D	0.956	1.00
58_V	93_R	0.955	1.00
54_A	99_R	0.954	1.00
87_L	121_R	0.949	1.00
188_P	244_L	0.948	1.00
152_F	156_H	0.942	1.00
162_S	166_A	0.929	1.00
56_V	98_A	0.929	1.00
31_H	130_V	0.927	1.00
155_L	181_P	0.926	1.00
41_A	45_A	0.913	1.00
189_G	229_A	0.910	1.00
58_V	89_A	0.904	1.00
190_D	194_D	0.901	1.00
180_L	183_P	0.894	1.00
114_Q	117_G	0.893	1.00
109_N	129_V	0.892	1.00
156_H	168_L	0.875	1.00
193_A	229_A	0.875	1.00
170_D	173_G	0.873	1.00
64_V	68_A	0.873	1.00
45_A	49_R	0.872	1.00
33_V	50_A	0.871	1.00
129_V	220_I	0.861	1.00
219_S	236_T	0.861	1.00
67_V	70_L	0.861	1.00
196_L	229_A	0.858	1.00
62_T	67_V	0.857	1.00
188_P	228_L	0.842	1.00
170_D	174_D	0.840	1.00
153_V	176_H	0.838	1.00
145_T	208_L	0.836	1.00
56_V	76_L	0.836	1.00
33_V	130_V	0.834	1.00
68_A	71_T	0.833	1.00
64_V	71_T	0.829	1.00
196_L	225_L	0.827	1.00
179_V	243_V	0.825	1.00
192_A	225_L	0.821	1.00
110_H	137_Q	0.816	1.00
150_T	155_L	0.812	1.00
169_R	172_V	0.811	1.00
52_R	70_L	0.809	1.00
50_A	53_D	0.808	1.00
140_A	147_M	0.804	1.00
154_T	175_R	0.799	1.00
83_E	87_L	0.793	1.00
37_P	42_F	0.789	1.00
195_L	201_A	0.789	1.00
50_A	128_R	0.785	1.00
57_I	73_A	0.785	1.00
108_P	112_G	0.781	1.00
76_L	89_A	0.774	1.00
109_N	115_F	0.771	1.00
204_D	224_T	0.769	1.00
152_F	155_L	0.768	1.00
65_E	68_A	0.766	1.00
157_K	167_R	0.766	1.00
46_R	130_V	0.764	1.00
202_A	205_L	0.762	1.00
46_R	49_R	0.754	1.00
91_G	121_R	0.753	1.00
87_L	91_G	0.752	1.00
61_E	77_T	0.751	1.00
27_D	126_P	0.743	1.00
83_E	117_G	0.743	1.00
154_T	176_H	0.735	1.00
40_P	66_F	0.728	1.00
79_G	83_E	0.728	1.00
66_F	70_L	0.727	1.00
155_L	158_S	0.718	1.00
139_A	245_A	0.716	1.00
153_V	167_R	0.716	1.00
154_T	157_K	0.716	1.00
138_V	213_L	0.715	1.00
50_A	99_R	0.714	1.00
206_D	224_T	0.714	1.00
149_D	153_V	0.712	1.00
181_P	243_V	0.712	1.00
232_A	238_F	0.712	1.00
139_A	243_V	0.708	1.00
165_V	190_D	0.707	1.00
119_V	127_V	0.704	1.00
104_L	112_G	0.701	1.00
117_G	120_E	0.699	1.00
107_D	129_V	0.697	1.00
161_V	165_V	0.697	1.00
189_G	230_A	0.696	1.00
43_L	67_V	0.693	1.00
39_N	42_F	0.693	1.00
136_L	179_V	0.693	1.00
118_K	121_R	0.690	1.00
82_D	85_A	0.687	1.00
142_R	214_T	0.685	1.00
211_E	242_S	0.682	1.00
129_V	142_R	0.680	1.00
208_L	245_A	0.679	1.00
82_D	186_L	0.676	1.00
31_H	101_T	0.674	1.00
168_L	191_I	0.670	1.00
61_E	82_D	0.670	1.00
92_E	95_A	0.666	1.00
76_L	86_A	0.665	1.00
150_T	156_H	0.664	1.00
50_A	54_A	0.664	1.00
75_L	78_C	0.662	1.00
209_V	228_L	0.660	1.00
88_S	121_R	0.660	1.00
175_R	201_A	0.656	1.00
51_I	101_T	0.655	1.00
34_G	138_V	0.654	1.00
51_I	57_I	0.650	1.00
165_V	197_E	0.650	1.00
56_V	74_D	0.649	1.00
110_H	147_M	0.647	1.00
221_T	236_T	0.646	1.00
94_V	100_G	0.646	1.00
109_N	141_S	0.639	1.00
39_N	214_T	0.636	1.00
184_F	238_F	0.635	1.00
62_T	65_E	0.629	1.00
115_F	118_K	0.628	1.00
80_Y	83_E	0.626	1.00
151_T	174_D	0.624	1.00
78_C	83_E	0.622	1.00
221_T	238_F	0.622	1.00
183_P	186_L	0.618	1.00
188_P	242_S	0.616	1.00
182_R	187_M	0.612	1.00
198_A	201_A	0.612	1.00
62_T	71_T	0.611	1.00
34_G	133_I	0.610	1.00
191_I	244_L	0.609	1.00
165_V	169_R	0.607	1.00
64_V	67_V	0.607	1.00
178_L	201_A	0.606	1.00
150_T	157_K	0.606	1.00
221_T	232_A	0.605	1.00
54_A	57_I	0.602	1.00
74_D	89_A	0.599	1.00
221_T	228_L	0.598	1.00
84_Q	88_S	0.596	1.00
47_G	67_V	0.594	1.00
46_R	50_A	0.594	1.00
173_G	198_A	0.593	1.00
47_G	101_T	0.589	1.00
180_L	191_I	0.587	1.00
76_L	93_R	0.586	1.00
115_F	149_D	0.586	1.00
178_L	246_V	0.586	1.00
170_D	175_R	0.586	1.00
65_E	75_L	0.583	1.00
115_F	120_E	0.575	0.99
230_A	234_E	0.572	0.99
115_F	146_P	0.570	0.99
184_F	242_S	0.569	0.99
172_V	198_A	0.566	0.99
104_L	113_Y	0.561	0.99
159_G	163_D	0.561	0.99
192_A	228_L	0.556	0.99
227_E	230_A	0.556	0.99
206_D	222_R	0.555	0.99
152_F	158_S	0.548	0.99
160_D	163_D	0.548	0.99
58_V	78_C	0.548	0.99
166_A	169_R	0.542	0.99
84_Q	87_L	0.541	0.99
167_R	171_A	0.539	0.99
85_A	89_A	0.539	0.99
178_L	195_L	0.536	0.99
51_I	71_T	0.536	0.99
210_L	245_A	0.534	0.99
67_V	71_T	0.534	0.99
138_V	142_R	0.529	0.99
188_P	238_F	0.526	0.99
77_T	86_A	0.525	0.99
48_E	71_T	0.524	0.99
211_E	221_T	0.523	0.99
162_S	165_V	0.521	0.99
188_P	192_A	0.521	0.99
147_M	179_V	0.520	0.99
63_V	71_T	0.519	0.99
111_S	152_F	0.516	0.99
159_G	162_S	0.516	0.99
232_A	237_P	0.515	0.99
32_A	115_F	0.515	0.99
87_L	90_F	0.514	0.99
43_L	71_T	0.511	0.99
64_V	70_L	0.511	0.99
140_A	245_A	0.511	0.99
40_P	70_L	0.508	0.99
147_M	177_L	0.506	0.99
151_T	154_T	0.506	0.99
152_F	176_H	0.506	0.99
91_G	125_E	0.501	0.99
45_A	52_R	0.501	0.99
78_C	87_L	0.501	0.99
30_V	90_F	0.501	0.99
234_E	237_P	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2yboA	2	0.892	100	0.227	Contact Map
1pjqA	2	0.948	100	0.229	Contact Map
3kwpA	2	0.876	100	0.234	Contact Map
1s4dA	4	0.92	100	0.235	Contact Map
1cbfA	2	0.904	100	0.246	Contact Map
3ndcA	2	0.88	100	0.255	Contact Map
3nutA	2	0.868	100	0.255	Contact Map
4e16A	2	0.864	100	0.256	Contact Map
1wyzA	2	0.836	100	0.26	Contact Map
2zvbA	2	0.86	100	0.271	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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