GCSPA - HALSA - GREMLIN Contacts

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GCSPA - Probable glycine dehydrogenase (decarboxylating) subunit 1

UniProt:	Q9HPJ9	Sequences: MSGSPYASPSEADTDAMLDAVGVDRVDELFDIPPEVSFDGEFGIDAKSEQAALRGVRRRLSDNDDLTEFLGRGHYEHYVPSLVDSVSQRSEFITSYTQYQPEITQGFLQVLFEYQSLLVELTGLGVANCSMYDAATALAEAALLAKRVRAADGNRVLVPGFVRDSHVDVLRNYTSGSDVVVERYATDAGNVDLDALEAAMDADVVMVYAENPTTCGTVEEQLCAVGDLADSHDALFCLGSDPVAMSILQRPVDVGADVVVGDASVLGMPTSYGTGLGVFATRKEFLRQVPGRLVGASEDDAGTRAFTLTLQTREQHIRKERATSNICTNQAWVALRAAIHAAWLGADGLVDLAERMVELPRDLAARLDDVSGVTAPVHDDRHHIREFQARTEQPAPAVASALEAEGFGVHAVDDHTIQVCVTDANEHATDAFVAAVREVSE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	441 (398)
Sequences:	5165 (2755)
Seq/√Len:	138.1

ECOLI - GCSP
BACSU - GCSPA GCSPB
HALSA - GCSPA GCSPB
SULSO - GCSPA GCSPB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
229_A	234_A	3.598	1.00
227_D	231_S	3.458	1.00
250_R	253_D	3.371	1.00
370_V	437_R	3.257	1.00
125_G	282_R	3.138	1.00
350_V	354_E	3.049	1.00
163_R	214_T	3.014	1.00
374_T	390_R	2.936	1.00
86_V	339_I	2.934	1.00
366_R	433_V	2.905	1.00
124_L	259_V	2.819	1.00
151_A	288_Q	2.770	1.00
240_S	278_V	2.760	1.00
200_M	228_L	2.705	1.00
155_R	180_V	2.700	1.00
195_A	199_A	2.692	1.00
363_L	421_V	2.655	1.00
283_K	286_L	2.639	1.00
365_A	368_D	2.605	1.00
109_Q	113_E	2.589	1.00
243_V	356_M	2.454	1.00
249_Q	253_D	2.404	1.00
145_A	258_V	2.338	1.00
156_V	206_M	2.326	1.00
223_C	227_D	2.294	1.00
226_G	236_F	2.169	1.00
223_C	249_Q	2.158	1.00
246_S	349_L	2.105	1.00
226_G	254_V	2.048	1.00
127_A	280_A	2.047	1.00
47_K	55_G	2.029	1.00
158_V	170_L	2.027	1.00
391_T	398_V	1.978	1.00
122_T	261_G	1.957	1.00
241_D	385_R	1.932	1.00
142_A	208_Y	1.908	1.00
48_S	51_A	1.906	1.00
155_R	201_D	1.906	1.00
366_R	369_D	1.881	1.00
76_E	424_A	1.880	1.00
155_R	203_D	1.844	1.00
263_A	278_V	1.842	1.00
363_L	429_T	1.823	1.00
391_T	395_A	1.804	1.00
145_A	237_C	1.788	1.00
363_L	433_V	1.780	1.00
126_V	286_L	1.775	1.00
51_A	426_E	1.774	1.00
53_L	82_L	1.771	1.00
363_L	387_F	1.770	1.00
207_V	229_A	1.742	1.00
224_A	227_D	1.740	1.00
79_V	336_R	1.731	1.00
74_H	275_G	1.726	1.00
409_V	432_F	1.709	1.00
194_D	197_E	1.708	1.00
112_F	306_F	1.706	1.00
67_T	428_A	1.689	1.00
75_Y	420_C	1.675	1.00
110_V	335_L	1.668	1.00
148_V	285_F	1.667	1.00
227_D	230_D	1.658	1.00
209_A	222_L	1.652	1.00
355_R	359_L	1.651	1.00
151_A	315_Q	1.642	1.00
156_V	208_Y	1.639	1.00
407_F	435_A	1.631	1.00
197_E	224_A	1.630	1.00
125_G	283_K	1.626	1.00
117_L	342_A	1.606	1.00
410_H	418_Q	1.601	1.00
186_T	190_N	1.592	1.00
95_S	104_T	1.581	1.00
413_D	416_T	1.574	1.00
359_L	429_T	1.566	1.00
218_V	248_L	1.553	1.00
64_D	68_E	1.547	1.00
155_R	182_E	1.537	1.00
112_F	296_A	1.529	1.00
364_A	383_H	1.522	1.00
388_Q	416_T	1.520	1.00
364_A	375_A	1.519	1.00
200_M	204_V	1.501	1.00
399_A	411_A	1.490	1.00
99_Y	104_T	1.488	1.00
81_S	84_D	1.469	1.00
197_E	228_L	1.467	1.00
74_H	270_T	1.467	1.00
390_R	415_H	1.458	1.00
28_E	31_D	1.457	1.00
170_L	181_V	1.453	1.00
110_V	338_A	1.451	1.00
161_F	215_C	1.440	1.00
223_C	254_V	1.438	1.00
360_P	387_F	1.436	1.00
250_R	254_V	1.420	1.00
116_S	119_V	1.418	1.00
366_R	434_A	1.417	1.00
213_T	219_E	1.412	1.00
154_N	178_D	1.407	1.00
237_C	256_A	1.401	1.00
154_N	203_D	1.390	1.00
66_L	406_G	1.386	1.00
388_Q	418_Q	1.381	1.00
367_L	436_V	1.374	1.00
209_A	236_F	1.370	1.00
87_S	336_R	1.366	1.00
331_A	335_L	1.365	1.00
237_C	260_V	1.361	1.00
113_E	338_A	1.361	1.00
160_G	183_R	1.356	1.00
208_Y	239_G	1.351	1.00
111_L	129_C	1.345	1.00
38_F	42_F	1.343	1.00
138_L	208_Y	1.341	1.00
310_L	313_R	1.335	1.00
344_L	352_L	1.331	1.00
119_V	125_G	1.318	1.00
119_V	127_A	1.312	1.00
82_L	343_W	1.310	1.00
366_R	430_D	1.310	1.00
159_P	191_V	1.307	1.00
69_F	428_A	1.303	1.00
281_T	285_F	1.297	1.00
55_G	59_R	1.294	1.00
268_M	333_V	1.293	1.00
157_L	199_A	1.291	1.00
409_V	413_D	1.283	1.00
366_R	437_R	1.280	1.00
361_R	383_H	1.271	1.00
107_F	331_A	1.262	1.00
360_P	421_V	1.261	1.00
114_Y	334_A	1.259	1.00
195_A	198_A	1.254	1.00
166_H	239_G	1.248	1.00
357_V	361_R	1.243	1.00
394_P	397_A	1.243	1.00
147_R	288_Q	1.240	1.00
105_Q	108_L	1.238	1.00
162_V	210_E	1.238	1.00
145_A	206_M	1.237	1.00
401_A	405_E	1.235	1.00
376_P	390_R	1.231	1.00
142_A	156_V	1.219	1.00
155_R	204_V	1.215	1.00
76_E	422_T	1.208	1.00
400_S	404_A	1.201	1.00
396_P	411_A	1.193	1.00
421_V	425_N	1.192	1.00
267_G	344_L	1.185	1.00
260_V	279_F	1.183	1.00
69_F	407_F	1.165	0.99
200_M	232_H	1.164	0.99
347_D	351_D	1.158	0.99
376_P	416_T	1.157	0.99
362_D	430_D	1.156	0.99
57_R	60_L	1.156	0.99
34_P	37_S	1.154	0.99
339_I	343_W	1.145	0.99
399_A	403_E	1.145	0.99
242_P	263_A	1.143	0.99
64_D	406_G	1.141	0.99
279_F	289_V	1.140	0.99
83_V	339_I	1.138	0.99
78_Y	424_A	1.133	0.99
76_E	425_N	1.131	0.99
401_A	404_A	1.129	0.99
375_A	389_A	1.116	0.99
152_D	203_D	1.114	0.99
138_L	170_L	1.113	0.99
211_N	254_V	1.105	0.99
99_Y	103_I	1.105	0.99
360_P	383_H	1.103	0.99
407_F	431_A	1.099	0.99
229_A	236_F	1.098	0.99
338_A	342_A	1.097	0.99
75_Y	163_R	1.097	0.99
211_N	248_L	1.094	0.99
161_F	213_T	1.093	0.99
242_P	261_G	1.082	0.99
230_D	234_A	1.078	0.99
123_G	250_R	1.078	0.99
145_A	235_L	1.076	0.99
373_V	389_A	1.075	0.99
226_G	235_L	1.067	0.99
141_A	258_V	1.067	0.99
202_A	232_H	1.066	0.99
116_S	120_E	1.061	0.99
34_P	39_D	1.061	0.99
83_V	343_W	1.056	0.99
75_Y	422_T	1.050	0.99
183_R	195_A	1.050	0.99
241_D	265_V	1.047	0.99
425_N	428_A	1.045	0.99
157_L	182_E	1.042	0.99
433_V	437_R	1.042	0.99
395_A	412_V	1.035	0.99
112_F	115_Q	1.034	0.99
135_A	169_V	1.034	0.99
138_L	166_H	1.033	0.99
419_V	432_F	1.030	0.99
37_S	40_G	1.027	0.99
351_D	354_E	1.026	0.99
67_T	431_A	1.024	0.99
220_E	223_C	1.008	0.98
238_L	254_V	1.008	0.98
118_L	280_A	1.002	0.98
249_Q	254_V	1.002	0.98
66_L	403_E	1.001	0.98
115_Q	126_V	1.001	0.98
110_V	339_I	0.998	0.98
170_L	208_Y	0.996	0.98
412_V	418_Q	0.996	0.98
194_D	198_A	0.986	0.98
405_E	431_A	0.981	0.98
226_G	230_D	0.979	0.98
93_I	332_W	0.973	0.98
125_G	281_T	0.967	0.98
197_E	231_S	0.967	0.98
57_R	61_S	0.965	0.98
356_M	385_R	0.964	0.98
410_H	413_D	0.963	0.98
276_L	334_A	0.961	0.98
222_L	254_V	0.960	0.98
187_D	192_D	0.958	0.98
113_E	117_L	0.958	0.98
83_V	267_G	0.957	0.98
72_R	163_R	0.957	0.98
55_G	58_R	0.955	0.98
162_V	208_Y	0.954	0.98
147_R	150_A	0.954	0.98
226_G	238_L	0.954	0.98
209_A	226_G	0.947	0.98
390_R	416_T	0.943	0.98
364_A	368_D	0.943	0.98
247_I	357_V	0.940	0.98
213_T	217_T	0.939	0.98
291_G	319_K	0.939	0.98
125_G	286_L	0.938	0.97
158_V	162_V	0.929	0.97
95_S	107_F	0.927	0.97
230_D	236_F	0.927	0.97
389_A	419_V	0.924	0.97
367_L	373_V	0.922	0.97
210_E	239_G	0.918	0.97
132_Y	321_R	0.917	0.97
117_L	341_A	0.914	0.97
37_S	42_F	0.913	0.97
405_E	435_A	0.912	0.97
351_D	355_R	0.904	0.97
431_A	435_A	0.900	0.97
154_N	180_V	0.899	0.97
77_H	270_T	0.898	0.97
333_V	336_R	0.893	0.97
149_R	153_G	0.893	0.97
399_A	417_I	0.892	0.97
144_L	279_F	0.891	0.97
287_R	315_Q	0.890	0.97
407_F	428_A	0.888	0.97
111_L	328_T	0.886	0.96
267_G	333_V	0.884	0.96
395_A	399_A	0.884	0.96
276_L	337_A	0.881	0.96
157_L	204_V	0.878	0.96
201_D	204_V	0.878	0.96
144_L	281_T	0.877	0.96
357_V	383_H	0.876	0.96
101_P	108_L	0.874	0.96
402_L	409_V	0.873	0.96
248_L	354_E	0.865	0.96
432_F	436_V	0.865	0.96
201_D	232_H	0.863	0.96
211_N	244_A	0.862	0.96
104_T	108_L	0.861	0.96
240_S	244_A	0.858	0.96
206_M	237_C	0.857	0.96
211_N	218_V	0.857	0.96
38_F	41_E	0.856	0.96
207_V	225_V	0.855	0.96
76_E	270_T	0.855	0.96
111_L	276_L	0.854	0.96
125_G	284_E	0.852	0.96
128_N	279_F	0.851	0.96
113_E	342_A	0.851	0.96
50_Q	78_Y	0.849	0.95
242_P	246_S	0.849	0.95
153_G	205_V	0.848	0.95
145_A	156_V	0.846	0.95
78_Y	81_S	0.846	0.95
69_F	425_N	0.844	0.95
190_N	381_R	0.842	0.95
146_K	205_V	0.841	0.95
240_S	263_A	0.840	0.95
153_G	233_D	0.838	0.95
124_L	252_V	0.833	0.95
90_S	93_I	0.832	0.95
434_A	437_R	0.828	0.95
149_R	205_V	0.828	0.95
376_P	388_Q	0.827	0.95
33_P	36_V	0.823	0.95
128_N	140_E	0.822	0.95
340_H	352_L	0.820	0.95
396_P	412_V	0.819	0.95
370_V	373_V	0.816	0.94
72_R	214_T	0.815	0.94
119_V	124_L	0.813	0.94
192_D	195_A	0.813	0.94
392_E	395_A	0.811	0.94
84_D	336_R	0.810	0.94
51_A	427_H	0.810	0.94
295_G	310_L	0.809	0.94
360_P	420_C	0.807	0.94
263_A	276_L	0.807	0.94
121_L	341_A	0.805	0.94
217_T	381_R	0.800	0.94
52_A	56_V	0.798	0.94
108_L	112_F	0.797	0.94
26_V	30_F	0.797	0.94
396_P	400_S	0.796	0.94
146_K	154_N	0.795	0.94
292_R	327_C	0.795	0.94
347_D	354_E	0.795	0.94
189_G	219_E	0.792	0.94
367_L	389_A	0.790	0.93
142_A	170_L	0.789	0.93
394_P	398_V	0.786	0.93
126_V	293_L	0.785	0.93
394_P	415_H	0.784	0.93
40_G	43_G	0.784	0.93
341_A	349_L	0.783	0.93
397_A	400_S	0.782	0.93
72_R	418_Q	0.781	0.93
359_L	421_V	0.778	0.93
282_R	285_F	0.776	0.93
144_L	148_V	0.776	0.93
124_L	256_A	0.774	0.93
383_H	387_F	0.774	0.93
370_V	433_V	0.770	0.93
237_C	254_V	0.769	0.92
127_A	279_F	0.767	0.92
340_H	344_L	0.767	0.92
120_E	250_R	0.764	0.92
193_L	197_E	0.764	0.92
193_L	228_L	0.764	0.92
68_E	270_T	0.763	0.92
270_T	275_G	0.763	0.92
121_L	349_L	0.761	0.92
427_H	430_D	0.760	0.92
114_Y	263_A	0.752	0.92
58_R	61_S	0.751	0.92
246_S	352_L	0.749	0.91
228_L	232_H	0.749	0.91
407_F	432_F	0.748	0.91
430_D	434_A	0.748	0.91
408_G	411_A	0.745	0.91
296_A	304_R	0.745	0.91
228_L	231_S	0.743	0.91
161_F	217_T	0.742	0.91
105_Q	112_F	0.742	0.91
162_V	183_R	0.740	0.91
219_E	222_L	0.740	0.91
47_K	52_A	0.737	0.91
405_E	434_A	0.736	0.91
373_V	376_P	0.736	0.91
409_V	412_V	0.733	0.91
61_S	67_T	0.733	0.91
237_C	245_M	0.731	0.90
69_F	421_V	0.731	0.90
118_L	263_A	0.730	0.90
389_A	436_V	0.729	0.90
430_D	433_V	0.728	0.90
291_G	312_T	0.726	0.90
238_L	250_R	0.724	0.90
128_N	289_V	0.723	0.90
352_L	356_M	0.721	0.90
281_T	289_V	0.721	0.90
403_E	409_V	0.720	0.90
261_G	278_V	0.718	0.90
146_K	179_V	0.716	0.90
114_Y	276_L	0.716	0.90
310_L	314_E	0.711	0.89
166_H	210_E	0.711	0.89
148_V	288_Q	0.711	0.89
358_E	362_D	0.709	0.89
391_T	394_P	0.708	0.89
268_M	336_R	0.707	0.89
363_L	432_F	0.706	0.89
120_E	346_A	0.706	0.89
427_H	431_A	0.704	0.89
224_A	228_L	0.704	0.89
263_A	266_L	0.702	0.89
238_L	259_V	0.700	0.88
238_L	256_A	0.698	0.88
373_V	436_V	0.698	0.88
291_G	297_S	0.698	0.88
392_E	415_H	0.697	0.88
171_R	183_R	0.696	0.88
222_L	238_L	0.696	0.88
156_V	205_V	0.695	0.88
220_E	224_A	0.693	0.88
311_Q	316_H	0.692	0.88
98_Q	292_R	0.692	0.88
393_Q	415_H	0.691	0.88
101_P	328_T	0.690	0.88
293_L	322_A	0.689	0.88
74_H	136_T	0.689	0.88
318_R	321_R	0.688	0.88
115_Q	293_L	0.688	0.88
424_A	428_A	0.688	0.88
291_G	313_R	0.688	0.88
174_T	179_V	0.686	0.87
145_A	149_R	0.685	0.87
262_D	278_V	0.685	0.87
375_A	380_D	0.684	0.87
69_F	432_F	0.680	0.87
142_A	171_R	0.680	0.87
354_E	358_E	0.679	0.87
387_F	419_V	0.674	0.87
363_L	367_L	0.674	0.87
171_R	175_S	0.672	0.86
409_V	418_Q	0.670	0.86
146_K	150_A	0.667	0.86
376_P	380_D	0.663	0.86
402_L	407_F	0.659	0.85
142_A	174_T	0.658	0.85
161_F	191_V	0.656	0.85
292_R	295_G	0.655	0.85
291_G	310_L	0.654	0.85
104_T	328_T	0.654	0.85
101_P	295_G	0.650	0.85
398_V	436_V	0.648	0.84
242_P	262_D	0.643	0.84
200_M	229_A	0.642	0.84
143_L	179_V	0.641	0.84
339_I	342_A	0.637	0.83
293_L	313_R	0.637	0.83
366_R	370_V	0.636	0.83
197_E	201_D	0.634	0.83
295_G	328_T	0.630	0.83
247_I	354_E	0.630	0.83
102_E	105_Q	0.630	0.83
260_V	335_L	0.629	0.83
425_N	429_T	0.629	0.83
222_L	226_G	0.629	0.83
346_A	349_L	0.628	0.82
247_I	353_A	0.627	0.82
359_L	362_D	0.626	0.82
131_M	279_F	0.623	0.82
395_A	417_I	0.622	0.82
346_A	350_V	0.621	0.82
124_L	280_A	0.620	0.82
82_L	85_S	0.619	0.82
144_L	258_V	0.616	0.81
104_T	319_K	0.613	0.81
115_Q	129_C	0.612	0.81
110_V	334_A	0.611	0.81
68_E	76_E	0.611	0.81
421_V	429_T	0.610	0.81
246_S	353_A	0.607	0.80
291_G	322_A	0.604	0.80
118_L	128_N	0.604	0.80
72_R	410_H	0.603	0.80
240_S	259_V	0.601	0.80
32_I	37_S	0.601	0.80
79_V	84_D	0.600	0.80
395_A	398_V	0.598	0.79
291_G	314_E	0.598	0.79
204_V	228_L	0.597	0.79
230_D	235_L	0.597	0.79
288_Q	315_Q	0.596	0.79
373_V	391_T	0.595	0.79
408_G	413_D	0.595	0.79
296_A	306_F	0.594	0.79
99_Y	102_E	0.594	0.79
291_G	311_Q	0.593	0.79
67_T	407_F	0.592	0.79
94_T	101_P	0.592	0.79
197_E	200_M	0.590	0.78
262_D	277_G	0.589	0.78
111_L	334_A	0.588	0.78
182_E	199_A	0.588	0.78
148_V	282_R	0.587	0.78
158_V	208_Y	0.587	0.78
399_A	409_V	0.586	0.78
206_M	234_A	0.585	0.78
138_L	239_G	0.585	0.78
102_E	297_S	0.585	0.78
218_V	357_V	0.585	0.78
291_G	321_R	0.585	0.78
131_M	277_G	0.584	0.78
364_A	387_F	0.584	0.78
155_R	178_D	0.583	0.78
368_D	375_A	0.583	0.78
369_D	437_R	0.583	0.78
148_V	281_T	0.582	0.77
243_V	246_S	0.580	0.77
27_D	37_S	0.579	0.77
287_R	313_R	0.577	0.77
356_M	360_P	0.576	0.77
298_E	304_R	0.574	0.77
110_V	331_A	0.574	0.77
190_N	217_T	0.572	0.76
393_Q	398_V	0.572	0.76
156_V	237_C	0.571	0.76
363_L	419_V	0.571	0.76
362_D	366_R	0.569	0.76
397_A	401_A	0.568	0.76
95_S	335_L	0.568	0.76
387_F	421_V	0.566	0.76
209_A	225_V	0.563	0.75
191_V	225_V	0.562	0.75
149_R	152_D	0.562	0.75
166_H	208_Y	0.562	0.75
105_Q	109_Q	0.557	0.74
330_Q	333_V	0.556	0.74
115_Q	328_T	0.556	0.74
287_R	314_E	0.555	0.74
361_R	364_A	0.552	0.74
395_A	413_D	0.551	0.74
214_T	410_H	0.550	0.73
215_C	388_Q	0.548	0.73
95_S	331_A	0.548	0.73
433_V	436_V	0.548	0.73
92_F	110_V	0.547	0.73
306_F	310_L	0.544	0.73
243_V	340_H	0.544	0.73
72_R	75_Y	0.542	0.72
68_E	71_G	0.540	0.72
297_S	305_A	0.540	0.72
143_L	177_S	0.538	0.72
162_V	170_L	0.538	0.72
364_A	373_V	0.537	0.72
104_T	295_G	0.534	0.71
87_S	93_I	0.534	0.71
258_V	288_Q	0.534	0.71
266_L	356_M	0.533	0.71
121_L	242_P	0.533	0.71
248_L	350_V	0.532	0.71
403_E	411_A	0.532	0.71
82_L	86_V	0.532	0.71
149_R	233_D	0.532	0.71
157_L	225_V	0.531	0.71
297_S	301_A	0.531	0.71
159_P	213_T	0.531	0.71
245_M	251_P	0.530	0.71
131_M	326_I	0.530	0.71
243_V	266_L	0.530	0.71
292_R	319_K	0.530	0.71
124_L	207_V	0.529	0.71
421_V	424_A	0.529	0.71
362_D	433_V	0.528	0.70
374_T	392_E	0.527	0.70
245_M	254_V	0.527	0.70
268_M	337_A	0.526	0.70
98_Q	323_T	0.525	0.70
160_G	181_V	0.524	0.70
256_A	259_V	0.524	0.70
258_V	279_F	0.523	0.70
140_E	320_E	0.523	0.70
95_S	99_Y	0.523	0.70
373_V	398_V	0.523	0.70
160_G	215_C	0.522	0.70
215_C	413_D	0.522	0.70
176_G	205_V	0.522	0.70
112_F	116_S	0.522	0.70
98_Q	327_C	0.522	0.70
265_V	385_R	0.521	0.69
124_L	237_C	0.521	0.69
262_D	270_T	0.521	0.69
143_L	147_R	0.520	0.69
108_L	294_V	0.520	0.69
67_T	425_N	0.519	0.69
123_G	252_V	0.517	0.69
365_A	369_D	0.517	0.69
235_L	285_F	0.516	0.69
419_V	436_V	0.516	0.69
213_T	388_Q	0.516	0.69
268_M	271_S	0.516	0.69
72_R	164_D	0.515	0.69
392_E	414_D	0.514	0.68
153_G	204_V	0.513	0.68
412_V	417_I	0.513	0.68
222_L	236_F	0.513	0.68
109_Q	295_G	0.512	0.68
380_D	387_F	0.510	0.68
217_T	380_D	0.509	0.68
374_T	415_H	0.506	0.67
70_L	408_G	0.505	0.67
80_P	83_V	0.505	0.67
193_L	225_V	0.504	0.67
239_G	260_V	0.503	0.67
54_R	78_Y	0.503	0.67
391_T	419_V	0.503	0.67
368_D	380_D	0.502	0.67
187_D	190_N	0.502	0.67
84_D	87_S	0.501	0.66
368_D	381_R	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4lhdA	2	0.9683	100	0.464	Contact Map
1wyuA	2	0.9683	100	0.593	Contact Map
1wyuB	2	0.9342	100	0.688	Contact Map
3mc6A	2	0.8367	100	0.754	Contact Map
3wcnA	2	0.9002	100	0.783	Contact Map
3hl2A	3	0.8526	100	0.809	Contact Map
2z67A	4	0.8617	100	0.813	Contact Map
3bc8A	3	0.8322	100	0.815	Contact Map
2jisA	2	0.9206	100	0.822	Contact Map
4obuE	2	0.8821	100	0.824	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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