GREMLIN Database
Q9HPJ6 - Chemotaxis protein
UniProt: Q9HPJ6 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 196 (190)
Sequences: 1124 (856)
Seq/√Len: 62.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
141_D145_V4.1301.00
101_S104_Q3.5471.00
15_E18_D3.4121.00
15_E19_A3.2211.00
18_D41_T3.0551.00
15_E22_A2.8711.00
15_E41_T2.8121.00
66_P134_G2.7711.00
60_T78_N2.6751.00
6_E9_A2.6381.00
117_S121_D2.5271.00
64_S74_V2.4291.00
71_P191_L2.3201.00
120_L123_I2.2541.00
18_D22_A2.2431.00
42_G164_N2.2131.00
85_A100_L2.0891.00
73_G163_V2.0361.00
63_A112_M2.0101.00
25_R188_F1.9611.00
111_L161_I1.9521.00
11_R15_E1.9121.00
76_C150_L1.9101.00
19_A22_A1.9071.00
11_R19_A1.9011.00
5_I9_A1.8741.00
11_R22_A1.8241.00
26_G30_Q1.8131.00
91_M111_L1.7711.00
39_S166_G1.7620.99
121_D125_N1.7590.99
82_T186_D1.7310.99
120_L133_H1.7130.99
75_F116_A1.7060.99
62_A146_I1.6460.99
60_T143_G1.6360.99
19_A41_T1.6230.99
67_L73_G1.5450.99
56_G144_P1.5390.99
135_P165_L1.5350.99
38_V41_T1.5240.98
22_A41_T1.5190.98
190_S193_N1.4440.98
17_A163_V1.4250.98
63_A108_L1.4240.98
159_L191_L1.4220.98
118_G188_F1.3730.97
21_A38_V1.3330.96
118_G138_V1.3250.96
46_L50_D1.3010.96
70_R129_I1.2910.96
8_R55_L1.2910.96
59_Q139_Y1.2900.96
16_L187_E1.2630.95
77_L177_V1.2510.95
34_V90_Q1.2490.95
31_L114_I1.2450.95
106_S183_P1.2290.94
142_S145_V1.2030.94
161_I167_V1.2020.94
20_S122_G1.1880.93
115_L191_L1.1790.93
36_A122_G1.1700.93
110_E114_I1.1450.92
36_A43_L1.1400.92
61_Y108_L1.1310.91
19_A69_S1.1270.91
51_L108_L1.1150.91
167_V182_I1.1110.91
16_L179_F1.1090.91
119_F134_G1.1050.90
21_A120_L1.0980.90
166_G174_E1.0860.90
67_L161_I1.0850.90
73_G187_E1.0840.90
168_E174_E1.0820.90
109_K188_F1.0810.89
54_H79_L1.0730.89
29_E195_L1.0730.89
19_A126_S1.0720.89
11_R114_I1.0520.88
88_A92_T1.0470.88
89_E96_I1.0460.88
26_G122_G1.0380.88
88_A107_A1.0370.87
46_L68_E1.0230.87
115_L118_G1.0230.87
91_M107_A1.0200.87
78_N90_Q1.0160.86
79_L120_L1.0120.86
86_A96_I1.0110.86
86_A175_T1.0000.85
6_E88_A0.9960.85
43_L144_P0.9940.85
51_L90_Q0.9850.85
11_R41_T0.9620.83
48_P56_G0.9560.83
83_G175_T0.9490.82
117_S161_I0.9490.82
61_Y88_A0.9480.82
151_R182_I0.9420.82
40_V129_I0.9410.82
28_I111_L0.9350.81
88_A104_Q0.9350.81
25_R36_A0.9340.81
53_Q57_T0.9270.81
11_R18_D0.9200.80
133_H165_L0.9200.80
85_A89_E0.9150.80
45_F144_P0.9150.80
94_T132_I0.9070.79
84_G141_D0.8970.79
179_F183_P0.8920.78
67_L179_F0.8870.78
35_E164_N0.8850.78
87_L111_L0.8830.78
119_F177_V0.8800.77
84_G160_L0.8800.77
96_I195_L0.8710.77
88_A162_M0.8680.76
109_K138_V0.8670.76
25_R41_T0.8670.76
113_N135_P0.8620.76
45_F162_M0.8620.76
146_I164_N0.8590.76
153_S157_Q0.8530.75
17_A20_S0.8480.75
9_A120_L0.8470.75
47_A50_D0.8440.74
21_A165_L0.8420.74
87_L114_I0.8290.73
20_S111_L0.8280.73
160_L164_N0.8260.73
72_H131_I0.8240.72
165_L177_V0.8240.72
24_V147_A0.8230.72
92_T110_E0.8210.72
156_E191_L0.8190.72
17_A119_F0.8150.72
27_H118_G0.8150.72
157_Q160_L0.8140.72
67_L181_L0.8100.71
60_T91_M0.8070.71
20_S183_P0.8040.71
20_S24_V0.8000.70
31_L179_F0.8000.70
110_E177_V0.8000.70
24_V135_P0.7860.69
73_G131_I0.7860.69
161_I188_F0.7700.67
106_S119_F0.7680.67
60_T124_A0.7670.67
51_L55_L0.7670.67
52_G160_L0.7630.67
87_L178_T0.7630.67
138_V186_D0.7620.66
31_L84_G0.7600.66
29_E92_T0.7500.65
89_E97_A0.7450.65
169_L175_T0.7400.64
100_L104_Q0.7370.64
110_E113_N0.7360.64
30_Q193_N0.7340.64
117_S127_L0.7340.64
11_R14_N0.7340.64
62_A123_I0.7340.64
106_S165_L0.7320.63
13_I123_I0.7270.63
103_M106_S0.7270.63
129_I180_Y0.7240.63
148_D154_G0.7220.62
34_V169_L0.7210.62
16_L123_I0.7160.62
33_G174_E0.7150.62
23_T67_L0.7140.61
86_A193_N0.7090.61
72_H186_D0.7070.61
78_N181_L0.7050.60
25_R119_F0.7040.60
75_F127_L0.7040.60
35_E75_F0.7020.60
73_G122_G0.6940.59
23_T106_S0.6890.59
61_Y84_G0.6880.59
108_L163_V0.6870.58
90_Q132_I0.6860.58
7_L189_A0.6850.58
121_D183_P0.6800.58
48_P165_L0.6780.57
50_D182_I0.6770.57
121_D177_V0.6760.57
122_G177_V0.6690.56
17_A100_L0.6690.56
85_A104_Q0.6680.56
20_S143_G0.6660.56
130_E195_L0.6660.56
30_Q121_D0.6640.56
66_P184_S0.6630.56
107_A113_N0.6600.55
110_E135_P0.6600.55
5_I10_F0.6590.55
47_A159_L0.6570.55
120_L132_I0.6570.55
34_V170_P0.6570.55
65_V81_D0.6510.54
5_I164_N0.6460.54
65_V106_S0.6430.54
115_L180_Y0.6400.53
77_L184_S0.6380.53
110_E165_L0.6370.53
33_G47_A0.6360.53
112_M117_S0.6320.52
59_Q144_P0.6310.52
91_M102_N0.6300.52
82_T101_S0.6300.52
65_V192_L0.6290.52
29_E48_P0.6290.52
78_N180_Y0.6260.52
84_G175_T0.6240.51
37_A192_L0.6220.51
76_C186_D0.6190.51
72_H184_S0.6170.51
44_T82_T0.6140.50
85_A99_T0.6120.50
75_F96_I0.6110.50
25_R38_V0.6080.50
44_T164_N0.6050.49
33_G137_T0.6030.49
49_E124_A0.6030.49
93_G101_S0.6030.49
102_N106_S0.6000.49
79_L177_V0.5990.48
12_D88_A0.5970.48
21_A25_R0.5970.48
64_S160_L0.5970.48
160_L169_L0.5960.48
12_D148_D0.5950.48
54_H86_A0.5950.48
95_E176_P0.5930.48
98_G193_N0.5920.48
141_D195_L0.5900.47
79_L157_Q0.5850.47
68_E175_T0.5820.47
5_I97_A0.5810.46
71_P162_M0.5800.46
129_I194_D0.5800.46
55_L79_L0.5770.46
71_P187_E0.5750.46
58_A115_L0.5680.45
11_R38_V0.5670.45
21_A183_P0.5650.45
36_A81_D0.5650.45
21_A141_D0.5640.45
21_A119_F0.5640.45
157_Q163_V0.5600.44
22_A63_A0.5590.44
21_A167_V0.5570.44
55_L171_A0.5560.44
19_A23_T0.5550.44
106_S135_P0.5540.43
85_A102_N0.5500.43
57_T144_P0.5480.43
57_T178_T0.5460.42
15_E25_R0.5440.42
134_G139_Y0.5430.42
67_L74_V0.5400.42
83_G117_S0.5390.42
71_P129_I0.5340.41
75_F120_L0.5340.41
125_N192_L0.5330.41
28_I178_T0.5300.41
51_L189_A0.5290.41
31_L37_A0.5270.40
49_E144_P0.5250.40
89_E104_Q0.5250.40
77_L87_L0.5230.40
22_A26_G0.5190.40
103_M112_M0.5180.39
21_A80_G0.5150.39
74_V153_S0.5140.39
23_T65_V0.5100.39
20_S62_A0.5070.38
47_A189_A0.5060.38
6_E130_E0.5020.38
116_A119_F0.5000.37
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3qtaA 2 0.9898 100 0.205 Contact Map
1xkrA 1 0.9898 100 0.289 Contact Map
4hynA 1 0.9745 100 0.36 Contact Map
4fhrA 1 0.9082 100 0.4 Contact Map
4gc8A 1 0.9133 100 0.422 Contact Map
1squA 2 0.7857 99.9 0.541 Contact Map
3hm4A 2 0.7806 99.9 0.548 Contact Map
3h2dA 2 0.7806 99.8 0.552 Contact Map
3hzhB 1 0.7551 99.8 0.574 Contact Map
3uswA 1 0.6837 29.5 0.931 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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