RL19E - HALSA - GREMLIN Contacts

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RL19E - 50S ribosomal protein L19e

UniProt:	Q9HPB6	Sequences: MSDLSAQKRLAADVLDVGENRVWFDPDAQSEIADAITREDIRELVADGTIDAEDTQGNSRGRARERDAKESYGHKKGAGSRKGKAGARQNEKREYVAGIRAQRQQLRELRDDGTLSPAQYREMYNMANGGEFDSVRRLTNYVEENYGDS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	149 (142)
Sequences:	392 (238)
Seq/√Len:	20.0

HALSA - RL19E
SULSO - RL19E

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_F	32_I	5.761	1.00
99_I	127_A	5.191	1.00
60_R	64_R	4.124	1.00
86_G	91_E	3.696	1.00
8_K	19_E	3.026	0.99
123_M	141_Y	2.947	0.99
28_A	49_T	2.442	0.97
60_R	63_A	2.346	0.96
39_E	42_R	2.306	0.96
14_V	45_V	2.286	0.95
59_S	62_R	2.268	0.95
93_R	96_V	2.238	0.95
69_K	75_K	2.221	0.95
4_L	38_R	2.161	0.94
116_S	119_Q	2.043	0.92
88_R	103_R	1.932	0.89
69_K	74_H	1.899	0.88
15_L	52_A	1.867	0.87
105_Q	139_T	1.854	0.87
6_A	10_L	1.820	0.86
73_G	132_F	1.724	0.83
38_R	103_R	1.642	0.80
32_I	44_L	1.637	0.79
61_G	65_E	1.583	0.77
126_M	131_E	1.578	0.77
22_V	45_V	1.556	0.76
133_D	137_R	1.512	0.74
3_D	6_A	1.485	0.72
23_W	51_D	1.478	0.72
99_I	121_R	1.417	0.69
22_V	97_A	1.391	0.67
102_Q	138_L	1.390	0.67
65_E	69_K	1.371	0.66
47_D	51_D	1.362	0.65
35_A	111_D	1.352	0.65
15_L	45_V	1.346	0.64
9_R	13_D	1.301	0.62
8_K	78_A	1.279	0.60
108_E	114_T	1.279	0.60
7_Q	110_R	1.265	0.60
21_R	55_T	1.240	0.58
126_M	134_S	1.238	0.58
7_Q	32_I	1.208	0.56
85_A	113_G	1.207	0.56
42_R	62_R	1.196	0.55
10_L	14_V	1.184	0.54
50_I	106_L	1.151	0.52
110_R	127_A	1.109	0.50
15_L	77_G	1.102	0.49
30_S	37_T	1.084	0.48
88_R	129_G	1.079	0.48
57_G	113_G	1.067	0.47
77_G	103_R	1.057	0.46
94_E	98_G	1.053	0.46
34_D	141_Y	1.031	0.44
56_Q	122_E	1.029	0.44
79_G	83_G	1.028	0.44
89_Q	94_E	1.025	0.44
80_S	91_E	1.011	0.43
81_R	110_R	1.003	0.43
69_K	72_Y	1.001	0.43
17_V	123_M	0.992	0.42
31_E	82_K	0.992	0.42
116_S	123_M	0.968	0.40
102_Q	142_V	0.961	0.40
39_E	109_L	0.959	0.40
38_R	110_R	0.946	0.39
102_Q	135_V	0.944	0.39
34_D	40_D	0.929	0.38
135_V	143_E	0.921	0.38
14_V	32_I	0.910	0.37
9_R	18_G	0.901	0.36
122_E	126_M	0.900	0.36
23_W	77_G	0.890	0.36
8_K	38_R	0.888	0.36
7_Q	35_A	0.885	0.35
25_D	69_K	0.884	0.35
10_L	116_S	0.883	0.35
109_L	142_V	0.877	0.35
83_G	103_R	0.877	0.35
67_D	107_R	0.875	0.35
76_K	86_G	0.872	0.35
136_R	139_T	0.869	0.34
31_E	46_A	0.868	0.34
36_I	74_H	0.865	0.34
80_S	137_R	0.864	0.34
15_L	66_R	0.857	0.34
17_V	97_A	0.849	0.33
26_P	123_M	0.849	0.33
3_D	16_D	0.845	0.33
135_V	139_T	0.837	0.33
17_V	22_V	0.836	0.33
105_Q	108_E	0.835	0.33
11_A	18_G	0.833	0.32
22_V	52_A	0.832	0.32
95_Y	110_R	0.824	0.32
99_I	139_T	0.817	0.32
13_D	118_A	0.808	0.31
46_A	92_K	0.803	0.31
10_L	105_Q	0.801	0.31
17_V	52_A	0.800	0.31
123_M	132_F	0.792	0.30
101_A	108_E	0.792	0.30
84_K	115_L	0.790	0.30
108_E	139_T	0.786	0.30
37_T	115_L	0.784	0.30
43_E	47_D	0.772	0.29
28_A	47_D	0.770	0.29
27_D	123_M	0.769	0.29
19_E	122_E	0.761	0.28
113_G	117_P	0.761	0.28
44_L	49_T	0.757	0.28
28_A	31_E	0.752	0.28
90_N	97_A	0.752	0.28
11_A	81_R	0.751	0.28
42_R	48_G	0.749	0.28
4_L	16_D	0.749	0.28
128_N	133_D	0.741	0.27
114_T	133_D	0.740	0.27
4_L	98_G	0.733	0.27
74_H	110_R	0.732	0.27
24_F	99_I	0.731	0.27
26_P	132_F	0.726	0.27
57_G	76_K	0.724	0.27
63_A	67_D	0.722	0.26
12_A	56_Q	0.722	0.26
101_A	135_V	0.717	0.26
7_Q	120_Y	0.715	0.26
43_E	112_D	0.715	0.26
37_T	109_L	0.714	0.26
68_A	72_Y	0.713	0.26
23_W	26_P	0.713	0.26
94_E	123_M	0.709	0.26
39_E	122_E	0.708	0.26
139_T	144_E	0.700	0.25
25_D	28_A	0.698	0.25
41_I	126_M	0.695	0.25
23_W	129_G	0.695	0.25
17_V	34_D	0.695	0.25
64_R	70_E	0.694	0.25
92_K	134_S	0.692	0.25
47_D	138_L	0.690	0.25
20_N	63_A	0.690	0.25
102_Q	114_T	0.686	0.25
21_R	144_E	0.686	0.25
110_R	124_Y	0.685	0.25
42_R	103_R	0.679	0.24
59_S	100_R	0.676	0.24
137_R	143_E	0.674	0.24
95_Y	128_N	0.672	0.24
90_N	96_V	0.668	0.24
60_R	88_R	0.668	0.24
10_L	98_G	0.666	0.24
114_T	142_V	0.664	0.24
4_L	33_A	0.656	0.23
105_Q	135_V	0.653	0.23
38_R	62_R	0.647	0.23
21_R	51_D	0.642	0.23
74_H	138_L	0.639	0.22
104_Q	135_V	0.632	0.22
7_Q	41_I	0.630	0.22
53_E	114_T	0.627	0.22
76_K	99_I	0.621	0.22
42_R	133_D	0.615	0.21
3_D	127_A	0.612	0.21
20_N	66_R	0.604	0.21
60_R	103_R	0.604	0.21
39_E	56_Q	0.592	0.20
41_I	143_E	0.590	0.20
6_A	126_M	0.588	0.20
50_I	134_S	0.575	0.20
16_D	113_G	0.575	0.20
3_D	102_Q	0.574	0.20
46_A	55_T	0.572	0.20
44_L	104_Q	0.570	0.20
125_N	137_R	0.569	0.19
10_L	96_V	0.568	0.19
77_G	88_R	0.568	0.19
8_K	91_E	0.566	0.19
10_L	52_A	0.563	0.19
27_D	130_G	0.561	0.19
39_E	55_T	0.556	0.19
48_G	120_Y	0.554	0.19
72_Y	125_N	0.554	0.19
96_V	110_R	0.552	0.19
24_F	29_Q	0.552	0.19
87_A	92_K	0.551	0.19
4_L	7_Q	0.550	0.19
69_K	98_G	0.544	0.18
68_A	112_D	0.541	0.18
26_P	48_G	0.541	0.18
71_S	93_R	0.538	0.18
60_R	106_L	0.536	0.18
3_D	85_A	0.535	0.18
65_E	72_Y	0.535	0.18
85_A	122_E	0.531	0.18
4_L	14_V	0.530	0.18
43_E	58_N	0.526	0.18
34_D	37_T	0.525	0.18
25_D	74_H	0.525	0.18
56_Q	85_A	0.522	0.18
123_M	131_E	0.519	0.18
24_F	43_E	0.518	0.17
15_L	73_G	0.518	0.17
19_E	32_I	0.517	0.17
57_G	65_E	0.517	0.17
47_D	53_E	0.516	0.17
35_A	87_A	0.509	0.17
23_W	28_A	0.508	0.17
70_E	108_E	0.508	0.17
14_V	113_G	0.503	0.17
20_N	90_N	0.502	0.17
13_D	112_D	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zf7T	1	0.9933	100	-0.007	Contact Map
3j61R	1	1	100	-0.005	Contact Map
4a17O	1	0.9799	100	-0.001	Contact Map
4w20R	1	0.9933	100	-0.001	Contact Map
4a1aO	1	0.9933	100	-0	Contact Map
1vx7T	1	0.9866	100	0.012	Contact Map
4ujrE	1	0.9933	100	0.013	Contact Map
1vq8P	1	0.9597	100	0.016	Contact Map
3j21Q	1	1	100	0.017	Contact Map
3jywP	1	0.9933	100	0.108	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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