SECY - HALSA - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SECY - Protein translocase subunit SecY

UniProt:	Q9HPB1	Sequences: MGWKEAAAPVLTRMPAVERPEGHVPFRRKMYWTGGVLVLYFFLTNVPLWGIQTAGNDFFGQFRSLLAGGQGTVLQLGIGPIVTASIVLQLLGGANLLGLDTDNDPRDQAIYQGLQKFLVGVMVVLTGAPMVFLGNFLQPSQQLAQSMPGGAFGVEVLIFAQIAAGGILLLFMDEVISKWGVGSGIGLFIVAGVSQSLVGGLVFWEGGVGSQGLLPTWFDIIVGNVSNMPPLLSGSGIEFLLMQAGILGLLTTLFIYVVVVYAESVRVEIPLSHARVKGARGRFPVKLIYASVLPMILVRALQANIQFLGQILNSTLASMPTWLGVYGGNGQVTGGLFYYLAPIYSPNAWMWWTSGATAARWQVLIRIAIDLSFMIIGGAIFAIFWVETADMGPDATARQIQNSGMQIPGFRKNQGVIEKVMERYIPQVTVIGGALVGLLAVMANMLGTIGNVSGTGLLLTISITYKLYEEIAEEQMMEMHPMMREMFGGGD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	491 (401)
Sequences:	3159 (1672)
Seq/√Len:	83.5

ECOLI - SECY
BACSU - SECY
HALSA - SECY
SULSO - SECY

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
375_I	437_G	5.404	1.00
43_L	74_L	5.376	1.00
36_V	172_M	5.203	1.00
415_G	419_K	5.142	1.00
88_L	111_Y	4.541	1.00
397_A	418_E	4.303	1.00
31_Y	35_G	3.977	1.00
383_I	430_V	3.650	1.00
32_W	36_V	3.526	1.00
152_F	156_V	3.454	1.00
422_E	426_P	3.379	1.00
96_L	111_Y	3.368	1.00
99_L	114_L	3.089	1.00
39_L	168_L	3.063	1.00
105_P	108_Q	2.988	1.00
135_N	155_E	2.978	1.00
379_A	437_G	2.957	1.00
63_R	69_G	2.854	1.00
88_L	118_L	2.774	1.00
335_G	339_Y	2.762	1.00
336_L	339_Y	2.753	1.00
120_G	167_I	2.734	1.00
271_L	283_F	2.729	1.00
95_N	98_G	2.704	1.00
124_V	163_A	2.603	1.00
168_L	172_M	2.590	1.00
127_G	163_A	2.588	1.00
273_H	405_M	2.465	1.00
97_L	101_T	2.459	1.00
375_I	379_A	2.443	1.00
285_V	425_I	2.429	1.00
336_L	340_L	2.429	1.00
398_R	402_N	2.409	1.00
24_V	28_R	2.403	1.00
46_V	73_V	2.326	1.00
295_M	440_A	2.309	1.00
219_D	222_V	2.289	1.00
395_A	399_Q	2.239	1.00
265_V	287_L	2.238	1.00
153_G	157_L	2.230	1.00
88_L	96_L	2.180	1.00
167_I	170_L	2.162	1.00
33_T	187_L	2.151	1.00
37_L	191_A	2.151	1.00
37_L	187_L	2.140	1.00
98_G	102_D	2.089	1.00
110_I	113_G	2.080	1.00
382_A	436_V	2.067	1.00
40_Y	192_G	2.065	1.00
398_R	401_Q	2.042	1.00
258_V	438_L	2.041	1.00
269_I	424_Y	2.038	1.00
269_I	407_I	2.009	1.00
221_I	245_G	1.977	1.00
423_R	427_Q	1.970	1.00
48_L	158_I	1.957	1.00
124_V	159_F	1.948	1.00
30_M	34_G	1.906	1.00
246_I	250_L	1.887	1.00
376_I	380_I	1.886	1.00
434_A	438_L	1.883	1.00
39_L	172_M	1.881	1.00
116_K	174_E	1.771	1.00
301_L	377_G	1.727	1.00
29_K	474_E	1.718	1.00
394_D	418_E	1.709	1.00
369_I	372_S	1.668	1.00
382_A	433_G	1.649	1.00
56_N	60_G	1.622	1.00
289_Y	425_I	1.597	1.00
337_F	340_L	1.590	1.00
263_E	286_K	1.586	1.00
364_L	368_A	1.564	1.00
147_M	150_G	1.559	1.00
263_E	435_L	1.555	1.00
152_F	155_E	1.555	1.00
383_I	426_P	1.553	1.00
413_N	417_I	1.535	1.00
95_N	99_L	1.520	0.99
124_V	127_G	1.517	0.99
391_M	396_T	1.513	0.99
393_P	422_E	1.509	0.99
368_A	372_S	1.507	0.99
122_M	483_M	1.507	0.99
264_S	465_Y	1.487	0.99
92_G	100_D	1.480	0.99
121_V	125_L	1.469	0.99
123_V	163_A	1.467	0.99
25_P	28_R	1.467	0.99
333_T	337_F	1.457	0.99
218_F	222_V	1.455	0.99
123_V	166_G	1.440	0.99
78_I	185_I	1.435	0.99
251_T	255_I	1.434	0.99
312_L	315_T	1.418	0.99
88_L	114_L	1.414	0.99
38_V	42_F	1.413	0.99
36_V	168_L	1.413	0.99
181_V	471_I	1.397	0.99
369_I	373_F	1.394	0.99
166_G	169_L	1.388	0.99
35_G	38_V	1.386	0.99
170_L	185_I	1.377	0.99
306_Q	309_G	1.362	0.99
119_V	170_L	1.335	0.99
416_V	419_K	1.328	0.99
435_L	458_L	1.327	0.99
333_T	336_L	1.320	0.99
32_W	179_W	1.319	0.99
334_G	338_Y	1.317	0.99
33_T	180_G	1.315	0.99
119_V	166_G	1.309	0.98
154_V	158_I	1.305	0.98
371_L	441_V	1.292	0.98
339_Y	369_I	1.292	0.98
92_G	111_Y	1.282	0.98
421_M	425_I	1.280	0.98
304_N	308_L	1.279	0.98
218_F	221_I	1.256	0.98
283_F	479_M	1.247	0.98
63_R	196_S	1.243	0.98
262_A	265_V	1.238	0.98
292_V	453_S	1.237	0.98
136_F	139_P	1.230	0.98
116_K	170_L	1.230	0.98
269_I	421_M	1.229	0.98
139_P	142_Q	1.213	0.97
155_E	159_F	1.211	0.97
387_E	422_E	1.207	0.97
396_T	421_M	1.202	0.97
456_G	460_T	1.191	0.97
243_Q	247_L	1.188	0.97
379_A	434_A	1.180	0.97
29_K	287_L	1.173	0.97
40_Y	44_T	1.169	0.97
255_I	259_V	1.165	0.97
79_G	83_T	1.161	0.97
335_G	338_Y	1.156	0.97
20_P	30_M	1.150	0.97
63_R	66_L	1.145	0.96
391_M	421_M	1.130	0.96
262_A	435_L	1.115	0.96
292_V	455_T	1.115	0.96
307_F	311_I	1.115	0.96
186_G	463_I	1.112	0.96
74_L	169_L	1.107	0.96
147_M	151_A	1.103	0.96
264_S	469_E	1.103	0.96
131_V	158_I	1.097	0.95
196_S	199_G	1.091	0.95
219_D	223_G	1.090	0.95
128_A	159_F	1.089	0.95
412_K	417_I	1.088	0.95
258_V	262_A	1.085	0.95
467_L	471_I	1.083	0.95
133_L	137_L	1.082	0.95
334_G	339_Y	1.079	0.95
15_P	18_E	1.078	0.95
69_G	72_T	1.074	0.95
169_L	188_F	1.073	0.95
190_V	464_T	1.073	0.95
27_R	31_Y	1.069	0.95
124_V	156_V	1.066	0.95
18_E	22_G	1.065	0.95
16_A	94_A	1.065	0.95
127_G	159_F	1.065	0.95
261_Y	265_V	1.063	0.95
154_V	157_L	1.055	0.94
312_L	316_L	1.049	0.94
150_G	154_V	1.038	0.94
336_L	342_P	1.034	0.94
23_H	475_Q	1.031	0.94
466_K	470_E	1.030	0.94
306_Q	310_Q	1.026	0.93
201_L	204_W	1.022	0.93
379_A	433_G	1.017	0.93
302_Q	441_V	1.016	0.93
392_G	395_A	1.014	0.93
40_Y	172_M	1.013	0.93
19_R	479_M	1.009	0.93
293_L	388_T	1.009	0.93
28_R	31_Y	1.004	0.93
333_T	342_P	1.000	0.93
48_L	131_V	0.997	0.92
151_A	154_V	0.996	0.92
220_I	225_V	0.989	0.92
48_L	71_G	0.983	0.92
433_G	437_G	0.983	0.92
122_M	300_A	0.982	0.92
156_V	160_A	0.976	0.92
295_M	454_G	0.972	0.92
299_R	374_M	0.971	0.91
268_E	282_R	0.959	0.91
84_A	118_L	0.949	0.91
372_S	376_I	0.948	0.90
313_N	316_L	0.937	0.90
118_L	185_I	0.935	0.90
290_A	386_V	0.934	0.90
193_V	292_V	0.933	0.90
445_M	449_I	0.931	0.90
199_G	203_F	0.930	0.90
254_F	257_V	0.925	0.89
50_G	154_V	0.920	0.89
283_F	421_M	0.915	0.89
17_V	21_E	0.909	0.89
333_T	339_Y	0.908	0.88
181_V	467_L	0.903	0.88
105_P	109_A	0.896	0.88
472_A	478_E	0.889	0.87
76_L	166_G	0.888	0.87
44_T	72_T	0.887	0.87
272_S	473_E	0.884	0.87
40_Y	72_T	0.883	0.87
174_E	275_R	0.879	0.87
401_Q	404_G	0.877	0.87
260_V	435_L	0.873	0.86
364_L	369_I	0.872	0.86
38_V	221_I	0.869	0.86
133_L	138_Q	0.869	0.86
188_F	307_F	0.868	0.86
197_L	201_L	0.867	0.86
242_M	246_I	0.866	0.86
285_V	428_V	0.862	0.86
147_M	154_V	0.861	0.86
97_L	100_D	0.859	0.86
136_F	373_F	0.858	0.85
85_S	455_T	0.845	0.85
467_L	470_E	0.845	0.85
114_L	118_L	0.842	0.84
20_P	471_I	0.840	0.84
79_G	386_V	0.840	0.84
78_I	167_I	0.838	0.84
173_D	185_I	0.838	0.84
292_V	296_I	0.837	0.84
159_F	163_A	0.832	0.84
415_G	418_E	0.831	0.84
335_G	342_P	0.827	0.83
203_F	219_D	0.827	0.83
24_V	478_E	0.826	0.83
437_G	441_V	0.826	0.83
77_G	118_L	0.824	0.83
309_G	312_L	0.822	0.83
128_A	162_I	0.818	0.83
244_A	248_G	0.818	0.83
374_M	441_V	0.818	0.83
406_Q	412_K	0.816	0.83
163_A	425_I	0.816	0.83
313_N	317_A	0.813	0.82
410_F	420_V	0.812	0.82
375_I	441_V	0.812	0.82
338_Y	342_P	0.812	0.82
400_I	405_M	0.809	0.82
191_A	194_S	0.809	0.82
113_G	117_F	0.808	0.82
250_L	254_F	0.807	0.82
248_G	252_T	0.803	0.81
76_L	396_T	0.798	0.81
303_A	307_F	0.797	0.81
370_D	375_I	0.794	0.81
45_N	63_R	0.793	0.81
26_F	181_V	0.786	0.80
295_M	436_V	0.786	0.80
370_D	387_E	0.783	0.80
262_A	431_I	0.783	0.80
375_I	434_A	0.782	0.80
399_Q	403_S	0.779	0.80
291_S	458_L	0.779	0.80
87_V	122_M	0.778	0.79
109_A	275_R	0.778	0.79
472_A	482_M	0.776	0.79
335_G	340_L	0.776	0.79
142_Q	147_M	0.774	0.79
96_L	99_L	0.770	0.79
191_A	388_T	0.768	0.79
249_L	253_L	0.766	0.78
200_G	204_W	0.765	0.78
247_L	250_L	0.764	0.78
221_I	224_N	0.764	0.78
91_L	485_E	0.762	0.78
179_W	453_S	0.760	0.78
221_I	244_A	0.759	0.78
132_F	155_E	0.756	0.77
393_P	397_A	0.756	0.77
19_R	23_H	0.756	0.77
32_W	175_V	0.756	0.77
187_L	191_A	0.754	0.77
51_I	54_A	0.752	0.77
57_D	63_R	0.748	0.77
83_T	87_V	0.748	0.77
189_I	296_I	0.747	0.77
394_D	415_G	0.746	0.77
462_S	466_K	0.745	0.76
71_G	162_I	0.744	0.76
248_G	450_G	0.739	0.76
104_D	107_D	0.738	0.76
250_L	256_Y	0.737	0.76
95_N	169_L	0.736	0.76
334_G	340_L	0.736	0.76
37_L	376_I	0.734	0.75
25_P	474_E	0.734	0.75
262_A	283_F	0.733	0.75
472_A	483_M	0.729	0.75
267_V	305_I	0.729	0.75
255_I	442_M	0.728	0.75
94_A	114_L	0.727	0.75
295_M	299_R	0.726	0.75
245_G	249_L	0.724	0.74
96_L	114_L	0.722	0.74
95_N	269_I	0.722	0.74
190_V	194_S	0.719	0.74
112_Q	174_E	0.717	0.74
277_K	405_M	0.714	0.73
91_L	94_A	0.714	0.73
29_K	40_Y	0.713	0.73
475_Q	478_E	0.713	0.73
374_M	440_A	0.712	0.73
247_L	251_T	0.711	0.73
374_M	453_S	0.711	0.73
111_Y	301_L	0.711	0.73
292_V	454_G	0.709	0.73
157_L	160_A	0.708	0.73
262_A	287_L	0.706	0.72
93_G	388_T	0.706	0.72
373_F	380_I	0.705	0.72
334_G	337_F	0.703	0.72
40_Y	191_A	0.702	0.72
200_G	451_N	0.702	0.72
55_G	73_V	0.701	0.72
73_V	148_P	0.699	0.72
271_L	484_R	0.699	0.72
302_Q	306_Q	0.697	0.72
333_T	340_L	0.696	0.71
396_T	435_L	0.696	0.71
191_A	254_F	0.695	0.71
32_W	286_K	0.694	0.71
181_V	187_L	0.694	0.71
100_D	263_E	0.692	0.71
135_N	152_F	0.689	0.71
315_T	372_S	0.687	0.70
72_T	385_W	0.687	0.70
73_V	168_L	0.687	0.70
309_G	337_F	0.685	0.70
149_G	155_E	0.683	0.70
29_K	310_Q	0.683	0.70
73_V	105_P	0.683	0.70
252_T	255_I	0.682	0.70
371_L	444_N	0.681	0.70
435_L	464_T	0.680	0.70
335_G	341_A	0.679	0.70
40_Y	188_F	0.679	0.70
192_G	195_Q	0.678	0.69
75_Q	111_Y	0.678	0.69
197_L	200_G	0.678	0.69
287_L	290_A	0.678	0.69
16_A	20_P	0.678	0.69
100_D	108_Q	0.676	0.69
126_T	427_Q	0.675	0.69
64_S	257_V	0.675	0.69
276_V	279_A	0.674	0.69
127_G	248_G	0.673	0.69
337_F	342_P	0.673	0.69
20_P	23_H	0.673	0.69
20_P	26_F	0.671	0.69
131_V	155_E	0.670	0.69
92_G	96_L	0.668	0.68
333_T	341_A	0.666	0.68
151_A	253_L	0.666	0.68
116_K	292_V	0.665	0.68
84_A	264_S	0.664	0.68
466_K	469_E	0.663	0.68
47_P	197_L	0.661	0.67
91_L	96_L	0.661	0.67
142_Q	151_A	0.660	0.67
249_L	338_Y	0.659	0.67
85_S	296_I	0.659	0.67
252_T	446_L	0.659	0.67
73_V	386_V	0.659	0.67
40_Y	77_G	0.658	0.67
40_Y	98_G	0.657	0.67
263_E	266_R	0.657	0.67
26_F	128_A	0.656	0.67
35_G	39_L	0.656	0.67
163_A	167_I	0.654	0.67
481_P	485_E	0.653	0.67
267_V	424_Y	0.653	0.67
76_L	83_T	0.651	0.66
137_L	439_L	0.651	0.66
125_L	168_L	0.651	0.66
62_F	421_M	0.649	0.66
139_P	485_E	0.648	0.66
187_L	439_L	0.648	0.66
426_P	430_V	0.646	0.66
286_K	389_A	0.646	0.66
46_V	438_L	0.643	0.65
396_T	480_H	0.643	0.65
243_Q	313_N	0.642	0.65
78_I	169_L	0.639	0.65
275_R	282_R	0.637	0.65
121_V	221_I	0.634	0.64
36_V	176_I	0.633	0.64
41_F	195_Q	0.631	0.64
115_Q	188_F	0.628	0.64
406_Q	473_E	0.628	0.64
60_G	63_R	0.625	0.63
28_R	35_G	0.624	0.63
82_V	459_L	0.624	0.63
269_I	408_P	0.623	0.63
140_S	147_M	0.622	0.63
459_L	463_I	0.622	0.63
40_Y	148_P	0.621	0.63
298_V	374_M	0.621	0.63
315_T	398_R	0.621	0.63
138_Q	141_Q	0.620	0.63
194_S	460_T	0.619	0.62
267_V	408_P	0.619	0.62
338_Y	341_A	0.618	0.62
225_V	240_L	0.618	0.62
309_G	484_R	0.618	0.62
94_A	370_D	0.618	0.62
289_Y	429_T	0.617	0.62
296_I	454_G	0.616	0.62
44_T	70_Q	0.615	0.62
71_G	293_L	0.613	0.62
46_V	141_Q	0.612	0.62
296_I	466_K	0.611	0.61
295_M	462_S	0.609	0.61
121_V	312_L	0.608	0.61
78_I	97_L	0.607	0.61
393_P	425_I	0.607	0.61
83_T	422_E	0.606	0.61
253_L	257_V	0.603	0.60
32_W	483_M	0.602	0.60
269_I	410_F	0.602	0.60
465_Y	469_E	0.600	0.60
44_T	476_M	0.600	0.60
83_T	295_M	0.600	0.60
430_V	445_M	0.599	0.60
271_L	405_M	0.598	0.60
114_L	290_A	0.597	0.60
23_H	477_M	0.597	0.60
190_V	385_W	0.595	0.59
194_S	268_E	0.595	0.59
316_L	335_G	0.593	0.59
393_P	421_M	0.593	0.59
446_L	450_G	0.593	0.59
339_Y	342_P	0.592	0.59
201_L	218_F	0.592	0.59
20_P	428_V	0.590	0.59
250_L	315_T	0.590	0.59
246_I	341_A	0.590	0.59
32_W	288_I	0.589	0.59
440_A	462_S	0.588	0.58
16_A	19_R	0.587	0.58
100_D	395_A	0.587	0.58
127_G	131_V	0.587	0.58
75_Q	401_Q	0.587	0.58
138_Q	142_Q	0.587	0.58
376_I	379_A	0.586	0.58
421_M	428_V	0.586	0.58
93_G	271_L	0.586	0.58
388_T	405_M	0.585	0.58
42_F	46_V	0.585	0.58
131_V	159_F	0.585	0.58
23_H	472_A	0.584	0.58
50_G	364_L	0.584	0.58
262_A	439_L	0.584	0.58
394_D	398_R	0.583	0.58
33_T	36_V	0.583	0.58
94_A	97_L	0.582	0.58
438_L	442_M	0.581	0.58
42_F	306_Q	0.581	0.58
111_Y	197_L	0.581	0.58
33_T	181_V	0.580	0.57
78_I	266_R	0.579	0.57
56_N	389_A	0.579	0.57
243_Q	449_I	0.579	0.57
128_A	132_F	0.578	0.57
85_S	169_L	0.578	0.57
290_A	484_R	0.576	0.57
73_V	442_M	0.575	0.57
89_Q	188_F	0.574	0.57
124_V	128_A	0.573	0.57
72_T	130_M	0.573	0.57
64_S	83_T	0.573	0.57
173_D	256_Y	0.573	0.57
239_F	340_L	0.572	0.56
74_L	168_L	0.572	0.56
123_V	167_I	0.572	0.56
125_L	223_G	0.571	0.56
299_R	302_Q	0.571	0.56
132_F	196_S	0.571	0.56
252_T	256_Y	0.570	0.56
16_A	21_E	0.569	0.56
377_G	380_I	0.569	0.56
342_P	444_N	0.569	0.56
73_V	450_G	0.568	0.56
167_I	474_E	0.568	0.56
32_W	467_L	0.567	0.56
78_I	100_D	0.565	0.56
374_M	402_N	0.565	0.56
222_V	225_V	0.562	0.55
56_N	61_Q	0.561	0.55
196_S	442_M	0.560	0.55
258_V	460_T	0.560	0.55
137_L	140_S	0.559	0.55
78_I	170_L	0.558	0.55
315_T	373_F	0.557	0.54
18_E	396_T	0.557	0.54
248_G	263_E	0.556	0.54
420_V	424_Y	0.556	0.54
128_A	156_V	0.556	0.54
78_I	293_L	0.556	0.54
373_F	377_G	0.555	0.54
250_L	257_V	0.554	0.54
44_T	392_G	0.554	0.54
54_A	335_G	0.553	0.54
259_V	300_A	0.553	0.54
289_Y	391_M	0.552	0.54
259_V	269_I	0.551	0.54
104_D	413_N	0.551	0.54
69_G	407_I	0.551	0.54
135_N	147_M	0.550	0.54
428_V	433_G	0.550	0.54
406_Q	452_V	0.549	0.53
300_A	303_A	0.548	0.53
125_L	375_I	0.548	0.53
50_G	162_I	0.547	0.53
82_V	292_V	0.546	0.53
137_L	142_Q	0.545	0.53
401_Q	424_Y	0.545	0.53
189_I	458_L	0.544	0.53
139_P	338_Y	0.544	0.53
37_L	197_L	0.542	0.52
280_R	483_M	0.541	0.52
203_F	314_S	0.541	0.52
269_I	283_F	0.540	0.52
119_V	255_I	0.539	0.52
112_Q	423_R	0.539	0.52
385_W	405_M	0.538	0.52
292_V	297_L	0.537	0.52
187_L	467_L	0.537	0.52
140_S	149_G	0.536	0.52
287_L	415_G	0.536	0.52
283_F	377_G	0.536	0.52
47_P	187_L	0.535	0.52
371_L	483_M	0.534	0.51
78_I	85_S	0.533	0.51
56_N	442_M	0.533	0.51
263_E	283_F	0.532	0.51
260_V	264_S	0.531	0.51
246_I	394_D	0.531	0.51
20_P	483_M	0.531	0.51
54_A	223_G	0.530	0.51
253_L	373_F	0.529	0.51
36_V	169_L	0.529	0.51
72_T	120_G	0.529	0.51
298_V	305_I	0.529	0.51
389_A	421_M	0.529	0.51
174_E	456_G	0.528	0.51
271_L	277_K	0.526	0.50
287_L	302_Q	0.525	0.50
55_G	253_L	0.525	0.50
339_Y	373_F	0.525	0.50
81_I	297_L	0.524	0.50
151_A	316_L	0.522	0.50
315_T	335_G	0.522	0.50
48_L	77_G	0.522	0.50
263_E	295_M	0.520	0.50
23_H	27_R	0.520	0.50
221_I	242_M	0.519	0.49
72_T	402_N	0.518	0.49
162_I	452_V	0.518	0.49
150_G	155_E	0.516	0.49
140_S	397_A	0.515	0.49
122_M	304_N	0.514	0.49
169_L	290_A	0.512	0.49
270_P	274_A	0.511	0.48
428_V	447_G	0.510	0.48
197_L	457_L	0.510	0.48
112_Q	447_G	0.510	0.48
257_V	261_Y	0.510	0.48
24_V	27_R	0.508	0.48
60_G	166_G	0.508	0.48
88_L	124_V	0.508	0.48
23_H	26_F	0.508	0.48
186_G	459_L	0.507	0.48
204_W	245_G	0.507	0.48
311_I	400_I	0.507	0.48
337_F	341_A	0.506	0.48
82_V	381_F	0.505	0.48
430_V	434_A	0.505	0.48
302_Q	373_F	0.504	0.47
111_Y	483_M	0.504	0.47
301_L	380_I	0.504	0.47
134_G	137_L	0.504	0.47
286_K	291_S	0.504	0.47
172_M	188_F	0.504	0.47
368_A	371_L	0.503	0.47
247_L	485_E	0.502	0.47
198_V	305_I	0.501	0.47
23_H	478_E	0.500	0.47
303_A	402_N	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mp7A	1	0.7658	100	0.121	Contact Map
2ww9A	1	0.9369	100	0.146	Contact Map
1rh5A	1	0.833	100	0.151	Contact Map
4w251	1	0.7862	100	0.194	Contact Map
3dinC	1	0.7739	100	0.238	Contact Map
2zjsY	2	0.8065	100	0.244	Contact Map
3dl8G	1	0.7963	100	0.248	Contact Map
3j01A	1	0.831	100	0.255	Contact Map
4j72A	2	0.1996	12.6	0.979	Contact Map
3b8cA	1	0.2383	11.7	0.979	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.012 seconds.