Q9HP94 - HALSA - GREMLIN Contacts

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Q9HP94 - Uncharacterized protein

UniProt:	Q9HP94	Sequences: MDVLSMRWADVLVASWPVDPEVVADRLPDGVDVDTHDGDAYLSVVPFVMENIRPRGLPSGVGRTFGELNLRTYVTVDGRPGIYFFNLDATDALGVRVARRLFGLPYYTADMRIERRAGGALAVRSTRTHAGQPSLAFDATYEQAGACSRATPGSLTAFLLERYRFFVASEDGTVYQGAVDHDPWQLADATLDVRRNDLFTANGFEQPAGSPHIAYSPGVDVTAGLPTVV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	229 (218)
Sequences:	588 (454)
Seq/√Len:	30.8

BACSU - YQJF
HALSA - Q9HP94

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_A	27_L	5.100	1.00
17_P	39_D	4.392	1.00
49_M	52_I	3.823	1.00
45_V	82_I	3.696	1.00
14_A	213_I	3.688	1.00
23_V	33_V	3.255	1.00
142_E	190_T	3.144	1.00
187_A	217_P	2.945	1.00
164_R	176_Q	2.930	1.00
40_A	72_T	2.910	1.00
70_L	199_F	2.837	1.00
34_D	162_R	2.662	1.00
12_L	141_Y	2.367	0.99
17_P	41_Y	2.346	0.99
120_A	140_T	2.289	0.99
182_D	220_D	2.263	0.99
68_L	111_M	2.232	0.99
30_G	76_V	2.225	0.99
15_S	214_A	2.079	0.98
54_P	94_G	2.073	0.98
111_M	125_S	2.071	0.98
10_D	217_P	2.030	0.98
66_G	90_T	2.021	0.97
24_A	33_V	1.926	0.97
153_G	156_T	1.840	0.96
98_A	106_Y	1.827	0.95
89_A	95_V	1.826	0.95
104_L	165_F	1.812	0.95
191_L	213_I	1.806	0.95
26_R	85_F	1.755	0.94
32_D	75_T	1.727	0.94
19_D	39_D	1.708	0.93
46_P	139_A	1.703	0.93
8_W	69_N	1.693	0.93
10_D	31_V	1.677	0.93
35_T	40_A	1.662	0.92
47_F	67_E	1.655	0.92
7_R	216_S	1.652	0.92
8_W	47_F	1.650	0.92
154_S	157_A	1.648	0.92
10_D	115_R	1.641	0.92
68_L	139_A	1.632	0.92
6_M	165_F	1.618	0.91
18_V	167_V	1.597	0.91
10_D	215_Y	1.581	0.90
66_G	113_I	1.580	0.90
11_V	45_V	1.545	0.89
69_N	84_F	1.537	0.89
9_A	50_E	1.509	0.88
8_W	67_E	1.500	0.88
41_Y	156_T	1.491	0.87
81_G	176_Q	1.464	0.86
88_D	109_A	1.441	0.86
130_A	133_P	1.395	0.84
115_R	119_G	1.394	0.84
155_L	159_L	1.391	0.83
180_D	222_T	1.378	0.83
27_L	83_Y	1.345	0.81
180_D	224_G	1.339	0.81
49_M	221_V	1.301	0.79
25_D	33_V	1.297	0.79
175_Y	226_P	1.286	0.78
93_L	221_V	1.285	0.78
27_L	33_V	1.277	0.78
31_V	72_T	1.272	0.77
47_F	65_F	1.264	0.77
15_S	43_S	1.261	0.77
53_R	57_L	1.260	0.77
124_R	138_D	1.252	0.76
53_R	58_P	1.234	0.75
6_M	223_A	1.228	0.75
23_V	27_L	1.216	0.74
96_R	100_R	1.216	0.74
14_A	139_A	1.209	0.74
114_E	122_A	1.200	0.73
18_V	23_V	1.198	0.73
102_F	177_G	1.188	0.72
4_L	223_A	1.186	0.72
45_V	99_R	1.182	0.72
52_I	94_G	1.173	0.71
46_P	50_E	1.166	0.71
122_A	138_D	1.148	0.70
82_I	173_T	1.142	0.69
95_V	108_T	1.129	0.68
166_F	203_G	1.114	0.67
75_T	80_P	1.112	0.67
75_T	184_W	1.108	0.67
26_R	204_F	1.101	0.66
153_G	157_A	1.095	0.66
44_V	139_A	1.094	0.66
31_V	83_Y	1.093	0.66
120_A	142_E	1.091	0.66
68_L	212_H	1.088	0.66
45_V	49_M	1.067	0.64
49_M	65_F	1.062	0.64
144_A	147_C	1.060	0.63
69_N	106_Y	1.054	0.63
43_S	156_T	1.052	0.63
135_L	201_A	1.050	0.63
11_V	111_M	1.046	0.62
143_Q	187_A	1.042	0.62
200_T	206_Q	1.012	0.60
69_N	181_H	1.011	0.60
14_A	210_S	1.001	0.59
147_C	185_Q	0.992	0.58
13_V	160_L	0.989	0.58
31_V	174_V	0.983	0.58
83_Y	158_F	0.983	0.58
20_P	35_T	0.977	0.57
94_G	104_L	0.974	0.57
46_P	68_L	0.973	0.57
21_E	210_S	0.966	0.56
12_L	161_E	0.961	0.56
23_V	204_F	0.953	0.55
97_V	100_R	0.948	0.55
24_A	30_G	0.948	0.55
100_R	172_G	0.947	0.55
163_Y	167_V	0.947	0.55
160_L	184_W	0.944	0.54
92_A	96_R	0.937	0.54
165_F	223_A	0.934	0.54
12_L	68_L	0.933	0.54
19_D	51_N	0.933	0.54
47_F	111_M	0.930	0.53
72_T	83_Y	0.917	0.52
178_A	224_G	0.917	0.52
15_S	49_M	0.916	0.52
32_D	76_V	0.916	0.52
84_F	163_Y	0.915	0.52
10_D	136_A	0.914	0.52
119_G	142_E	0.912	0.52
22_V	112_R	0.905	0.51
80_P	83_Y	0.904	0.51
80_P	166_F	0.901	0.51
160_L	186_L	0.895	0.51
6_M	15_S	0.891	0.50
15_S	63_R	0.885	0.50
159_L	162_R	0.881	0.49
83_Y	212_H	0.873	0.49
63_R	166_F	0.873	0.49
35_T	107_Y	0.866	0.48
4_L	165_F	0.863	0.48
92_A	108_T	0.861	0.48
107_Y	127_R	0.849	0.47
87_L	223_A	0.849	0.47
16_W	40_A	0.847	0.47
72_T	85_F	0.840	0.46
88_D	107_Y	0.839	0.46
147_C	187_A	0.838	0.46
196_N	199_F	0.835	0.46
49_M	97_V	0.821	0.45
35_T	157_A	0.813	0.44
42_L	122_A	0.807	0.44
7_R	10_D	0.804	0.43
24_A	172_G	0.800	0.43
151_T	213_I	0.798	0.43
134_S	143_Q	0.796	0.43
6_M	104_L	0.795	0.43
43_S	173_T	0.793	0.42
198_L	201_A	0.786	0.42
49_M	219_V	0.786	0.42
142_E	188_D	0.784	0.42
23_V	79_R	0.779	0.41
11_V	219_V	0.778	0.41
113_I	121_L	0.769	0.41
37_D	134_S	0.768	0.40
6_M	162_R	0.766	0.40
208_A	211_P	0.764	0.40
5_S	56_G	0.759	0.40
30_G	200_T	0.756	0.40
91_D	226_P	0.744	0.39
136_A	197_D	0.743	0.39
37_D	41_Y	0.740	0.38
27_L	44_V	0.734	0.38
67_E	106_Y	0.734	0.38
54_P	174_V	0.734	0.38
11_V	46_P	0.723	0.37
25_D	101_L	0.720	0.37
99_R	107_Y	0.719	0.37
36_H	210_S	0.718	0.37
159_L	183_P	0.714	0.36
52_I	93_L	0.713	0.36
30_G	173_T	0.712	0.36
106_Y	163_Y	0.711	0.36
48_V	64_T	0.709	0.36
112_R	146_A	0.705	0.36
33_V	179_V	0.703	0.36
93_L	152_P	0.701	0.35
49_M	102_F	0.700	0.35
71_R	184_W	0.700	0.35
12_L	163_Y	0.696	0.35
52_I	179_V	0.691	0.35
69_N	163_Y	0.687	0.34
11_V	31_V	0.683	0.34
33_V	72_T	0.678	0.34
13_V	105_P	0.676	0.34
143_Q	147_C	0.674	0.33
48_V	66_G	0.673	0.33
145_G	187_A	0.670	0.33
165_F	225_L	0.669	0.33
37_D	151_T	0.661	0.33
98_A	221_V	0.657	0.32
35_T	88_D	0.656	0.32
175_Y	225_L	0.656	0.32
87_L	102_F	0.653	0.32
5_S	51_N	0.651	0.32
50_E	64_T	0.648	0.32
65_F	97_V	0.647	0.32
156_T	214_A	0.647	0.32
69_N	184_W	0.643	0.31
86_N	125_S	0.641	0.31
90_T	111_M	0.640	0.31
130_A	136_A	0.639	0.31
101_L	222_T	0.639	0.31
7_R	50_E	0.639	0.31
36_H	138_D	0.637	0.31
80_P	212_H	0.636	0.31
82_I	160_L	0.635	0.31
51_N	57_L	0.635	0.31
21_E	131_G	0.634	0.31
52_I	219_V	0.631	0.30
20_P	39_D	0.630	0.30
52_I	221_V	0.627	0.30
68_L	123_V	0.626	0.30
116_R	185_Q	0.625	0.30
140_T	193_V	0.623	0.30
110_D	126_T	0.623	0.30
83_Y	174_V	0.619	0.30
201_A	207_P	0.619	0.30
18_V	83_Y	0.614	0.29
8_W	13_V	0.614	0.29
185_Q	189_A	0.613	0.29
94_G	165_F	0.608	0.29
103_G	160_L	0.606	0.29
107_Y	129_H	0.606	0.29
94_G	98_A	0.604	0.29
16_W	87_L	0.604	0.29
58_P	105_P	0.603	0.29
26_R	42_L	0.600	0.28
54_P	223_A	0.600	0.28
4_L	45_V	0.599	0.28
177_G	226_P	0.596	0.28
140_T	143_Q	0.595	0.28
48_V	110_D	0.594	0.28
135_L	197_D	0.593	0.28
199_F	204_F	0.588	0.28
43_S	215_Y	0.588	0.28
125_S	217_P	0.587	0.28
42_L	202_N	0.585	0.27
61_V	199_F	0.585	0.27
12_L	215_Y	0.584	0.27
161_E	171_D	0.583	0.27
46_P	67_E	0.582	0.27
23_V	76_V	0.582	0.27
140_T	204_F	0.579	0.27
63_R	165_F	0.579	0.27
27_L	38_G	0.577	0.27
134_S	216_S	0.576	0.27
6_M	70_L	0.574	0.27
207_P	211_P	0.572	0.27
82_I	214_A	0.571	0.26
88_D	127_R	0.571	0.26
66_G	166_F	0.570	0.26
65_F	156_T	0.569	0.26
57_L	81_G	0.569	0.26
4_L	177_G	0.569	0.26
30_G	172_G	0.567	0.26
43_S	213_I	0.566	0.26
179_V	223_A	0.565	0.26
25_D	64_T	0.564	0.26
103_G	226_P	0.563	0.26
82_I	106_Y	0.563	0.26
173_T	186_L	0.561	0.26
54_P	102_F	0.561	0.26
121_L	127_R	0.560	0.26
62_G	70_L	0.560	0.26
68_L	129_H	0.556	0.26
123_V	141_Y	0.553	0.25
138_D	195_R	0.553	0.25
72_T	159_L	0.551	0.25
36_H	154_S	0.551	0.25
86_N	107_Y	0.549	0.25
19_D	22_V	0.548	0.25
59_S	142_E	0.548	0.25
31_V	166_F	0.546	0.25
115_R	126_T	0.546	0.25
65_F	79_R	0.545	0.25
94_G	177_G	0.542	0.25
66_G	111_M	0.539	0.25
16_W	164_R	0.538	0.24
26_R	99_R	0.538	0.24
150_A	154_S	0.538	0.24
79_R	224_G	0.537	0.24
6_M	61_V	0.537	0.24
29_D	112_R	0.534	0.24
179_V	196_N	0.532	0.24
91_D	224_G	0.531	0.24
18_V	21_E	0.530	0.24
86_N	155_L	0.529	0.24
13_V	141_Y	0.529	0.24
43_S	61_V	0.528	0.24
70_L	154_S	0.527	0.24
21_E	112_R	0.526	0.24
31_V	212_H	0.525	0.24
209_G	222_T	0.523	0.24
8_W	181_H	0.522	0.24
4_L	52_I	0.521	0.23
210_S	217_P	0.520	0.23
178_A	184_W	0.517	0.23
145_G	153_G	0.516	0.23
160_L	164_R	0.516	0.23
181_H	184_W	0.516	0.23
20_P	182_D	0.516	0.23
172_G	203_G	0.515	0.23
122_A	188_D	0.513	0.23
114_E	151_T	0.513	0.23
15_S	88_D	0.510	0.23
22_V	205_E	0.508	0.23
69_N	161_E	0.506	0.23
91_D	96_R	0.506	0.23
6_M	89_A	0.505	0.23
146_A	220_D	0.504	0.23
167_V	178_A	0.502	0.22
44_V	196_N	0.502	0.22
10_D	53_R	0.502	0.22
216_S	219_V	0.502	0.22
89_A	165_F	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4jmdA	4	0.9258	99.9	0.738	Contact Map
3bgtA	6	0.9039	99.8	0.763	Contact Map
3c8wA	6	0.9083	99.8	0.767	Contact Map
4zboA	4	0.9476	99.4	0.823	Contact Map
3bh2A	6	0.9127	99.2	0.84	Contact Map
3cmbA	4	0.9301	97.2	0.908	Contact Map
3q6kA	1	0.8297	4.3	0.973	Contact Map
1k3sA	2	0.1616	3.4	0.974	Contact Map
4zcnA	3	0.3275	3.1	0.975	Contact Map
4bhuA	6	0.476	3	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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