Q9HP90 - HALSA - GREMLIN Contacts

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Q9HP90 - Uncharacterized protein

UniProt:	Q9HP90	Sequences: MYDRILLPVDDSDSMDRVVEHAADVAGRRDATVDVLYVLDDRAFLTLDDGMQDEATAQLRTQGERAVEHAADRLSEAGVDTETYVRDGDPADEILAVLAEDGADLVVMGTRRGDFEQSMLGSVSRDVVESTETPVLTVPVTED	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	143 (134)
Sequences:	20874 (16938)
Seq/√Len:	1463.3

ECOLI - USPF USPG USPE USPD USPC USPA
BACSU - YXIE NHAX
HALSA - Q9HP90 Q9HRP5 Q9HPP5 Q9HPQ8 Q9HPF7 Q9HMJ0 Q9HHX5 Q9HRD8 Q9HNX9 Q9HMI9 Q9HHV8 Q9HHY0 Q9HMU1
SULSO - Q97X90 Q97V57 Q7LXW4 Q97U40

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
34_D	84_Y	3.227	1.00
91_A	126_D	2.870	1.00
4_R	34_D	2.863	1.00
6_L	103_A	2.805	1.00
32_T	82_E	2.575	1.00
21_H	136_L	2.557	1.00
4_R	32_T	2.384	1.00
84_Y	97_V	2.379	1.00
105_L	136_L	2.358	1.00
106_V	133_T	2.102	1.00
71_A	83_T	2.000	1.00
97_V	101_D	1.990	1.00
108_M	127_V	1.981	1.00
34_D	82_E	1.937	1.00
86_R	93_E	1.924	1.00
34_D	103_A	1.863	1.00
125_R	129_E	1.853	1.00
34_D	101_D	1.838	1.00
110_T	139_P	1.786	1.00
88_G	93_E	1.759	1.00
34_D	97_V	1.753	1.00
38_V	93_E	1.716	1.00
8_P	94_I	1.706	1.00
32_T	80_D	1.682	1.00
36_L	97_V	1.675	1.00
7_L	22_A	1.673	1.00
8_P	108_M	1.600	1.00
93_E	96_A	1.504	1.00
20_E	73_R	1.493	1.00
25_V	29_R	1.487	1.00
71_A	75_S	1.482	1.00
98_L	106_V	1.467	1.00
37_Y	63_G	1.465	1.00
31_A	104_D	1.452	1.00
95_L	130_S	1.404	1.00
106_V	131_T	1.377	1.00
86_R	97_V	1.370	1.00
16_D	73_R	1.346	1.00
126_D	130_S	1.311	1.00
60_R	64_E	1.308	1.00
7_L	19_V	1.302	1.00
64_E	68_E	1.258	1.00
90_P	123_V	1.238	1.00
106_V	127_V	1.215	1.00
22_A	26_A	1.185	1.00
36_L	86_R	1.167	1.00
4_R	104_D	1.144	1.00
97_V	100_E	1.136	1.00
115_F	119_M	1.118	1.00
63_G	66_A	1.108	1.00
68_E	83_T	1.106	1.00
73_R	77_A	1.104	1.00
21_H	138_V	1.072	1.00
68_E	71_A	1.070	1.00
66_A	70_A	1.057	1.00
9_V	70_A	1.034	1.00
131_T	135_V	1.023	1.00
19_V	35_V	1.020	1.00
5_I	105_L	1.019	1.00
21_H	25_V	1.015	1.00
108_M	124_S	0.993	1.00
59_L	62_Q	0.991	1.00
67_V	83_T	0.988	1.00
110_T	137_T	0.987	1.00
128_V	137_T	0.986	1.00
66_A	69_H	0.984	1.00
22_A	107_V	0.977	1.00
68_E	72_D	0.967	1.00
56_T	60_R	0.952	1.00
70_A	73_R	0.947	1.00
11_D	37_Y	0.946	1.00
29_R	104_D	0.943	1.00
38_V	90_P	0.932	1.00
36_L	94_I	0.927	1.00
97_V	103_A	0.926	1.00
4_R	103_A	0.919	1.00
114_D	117_Q	0.910	1.00
4_R	101_D	0.908	1.00
39_L	87_D	0.908	1.00
35_V	81_T	0.905	1.00
98_L	133_T	0.901	1.00
21_H	24_D	0.898	1.00
61_T	65_R	0.898	1.00
15_M	18_V	0.897	1.00
19_V	70_A	0.897	1.00
37_Y	66_A	0.894	1.00
12_S	15_M	0.889	1.00
110_T	124_S	0.886	1.00
39_L	85_V	0.880	1.00
117_Q	125_R	0.873	1.00
96_A	100_E	0.869	1.00
24_D	28_R	0.865	1.00
63_G	67_V	0.859	1.00
23_A	79_V	0.857	1.00
70_A	74_L	0.855	1.00
16_D	20_E	0.853	1.00
112_R	116_E	0.853	1.00
16_D	69_H	0.840	1.00
86_R	100_E	0.837	1.00
57_A	61_T	0.828	1.00
124_S	137_T	0.826	1.00
22_A	33_V	0.825	1.00
51_M	54_E	0.825	1.00
23_A	74_L	0.819	1.00
21_H	134_P	0.818	1.00
84_Y	101_D	0.818	1.00
62_Q	66_A	0.807	1.00
69_H	73_R	0.806	1.00
35_V	70_A	0.797	1.00
95_L	131_T	0.794	1.00
17_R	20_E	0.792	1.00
95_L	127_V	0.792	1.00
9_V	35_V	0.792	1.00
9_V	16_D	0.789	1.00
6_L	36_L	0.786	1.00
23_A	77_A	0.783	1.00
98_L	103_A	0.780	1.00
9_V	18_V	0.777	1.00
6_L	97_V	0.777	1.00
107_V	136_L	0.777	1.00
73_R	76_E	0.771	1.00
26_A	33_V	0.753	1.00
6_L	106_V	0.747	1.00
89_D	92_D	0.735	1.00
9_V	19_V	0.728	1.00
27_G	78_G	0.727	1.00
63_G	85_V	0.719	1.00
54_E	58_Q	0.710	1.00
53_D	57_A	0.706	1.00
16_D	70_A	0.705	1.00
52_Q	55_A	0.703	1.00
8_P	109_G	0.699	1.00
35_V	74_L	0.699	1.00
94_I	127_V	0.697	1.00
59_L	63_G	0.695	1.00
91_A	123_V	0.694	1.00
14_S	17_R	0.686	1.00
58_Q	62_Q	0.685	1.00
114_D	118_S	0.683	1.00
53_D	56_T	0.682	1.00
39_L	63_G	0.679	1.00
64_E	83_T	0.678	1.00
74_L	77_A	0.676	1.00
61_T	64_E	0.676	1.00
69_H	72_D	0.675	1.00
9_V	15_M	0.675	1.00
19_V	23_A	0.675	1.00
26_A	31_A	0.670	1.00
62_Q	65_R	0.670	1.00
95_L	98_L	0.665	1.00
24_D	27_G	0.664	1.00
107_V	138_V	0.663	1.00
25_V	28_R	0.663	1.00
67_V	71_A	0.662	1.00
74_L	81_T	0.656	1.00
65_R	69_H	0.648	1.00
7_L	33_V	0.648	1.00
115_F	118_S	0.644	1.00
55_A	58_Q	0.641	1.00
36_L	93_E	0.640	1.00
23_A	27_G	0.634	1.00
58_Q	61_T	0.634	1.00
54_E	57_A	0.633	1.00
71_A	81_T	0.631	1.00
22_A	31_A	0.630	1.00
91_A	95_L	0.625	1.00
108_M	137_T	0.625	1.00
72_D	76_E	0.624	1.00
26_A	29_R	0.618	1.00
11_D	66_A	0.614	1.00
5_I	26_A	0.608	1.00
102_G	133_T	0.607	1.00
91_A	127_V	0.606	1.00
5_I	107_V	0.605	1.00
93_E	97_V	0.599	1.00
57_A	60_R	0.598	1.00
109_G	138_V	0.597	1.00
72_D	75_S	0.586	1.00
27_G	77_A	0.581	1.00
20_E	77_A	0.580	1.00
120_L	124_S	0.579	1.00
7_L	18_V	0.566	1.00
18_V	107_V	0.560	1.00
10_D	15_M	0.555	1.00
52_Q	56_T	0.547	1.00
45_L	49_D	0.542	1.00
25_V	107_V	0.541	1.00
11_D	70_A	0.537	1.00
91_A	130_S	0.536	1.00
111_R	124_S	0.533	1.00
60_R	87_D	0.532	1.00
71_A	74_L	0.531	1.00
67_V	70_A	0.524	1.00
23_A	73_R	0.517	1.00
38_V	88_G	0.516	1.00
43_A	46_T	0.514	1.00
55_A	59_L	0.509	1.00
17_R	21_H	0.507	1.00
51_M	55_A	0.504	1.00
8_P	90_P	0.501	1.00
127_V	135_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1mjhA	2	0.965	99.9	0.171	Contact Map
4wnyA	2	0.8811	99.9	0.171	Contact Map
3s3tA	4	0.972	99.9	0.174	Contact Map
5ahwA	4	0.986	99.9	0.175	Contact Map
2dumA	2	0.972	99.9	0.179	Contact Map
2gm3A	2	0.8881	99.9	0.18	Contact Map
3hgmA	2	0.965	99.9	0.19	Contact Map
3tnjA	2	0.8741	99.9	0.194	Contact Map
1jmvA	4	0.972	99.9	0.205	Contact Map
3loqA	1	0.965	99.9	0.207	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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