Q9HP89 - HALSA - GREMLIN Contacts

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Q9HP89 - Photolyase/cryptochrome

UniProt:	Q9HP89	Sequences: MHLYWHQRDLRVPDNRGLHAATDGDTVVPVYVFDDTVLSQVGRPKRAFLAAGVRALRAAYRERGSDLLVREGDAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALAAAGVDTAGHVDHTLVDPATLDDAYPSHSQFYDDWQQAPKPDPVPAPDADALADVHDDHTLSVPAPEPPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAPASAVSRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHTPRLQTENYVSFDAPIAWQNSDDHFEAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVVASFLTKHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTVAVRIFDPVSQMAKYDSDAAFVTEYVPELRGVDPETIVDWPTLRHSQRERLAPDYHHPIVDRDHAYERAQRVFEAALDGDA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	462 (401)
Sequences:	5436 (4193)
Seq/√Len:	209.4

ECOLI - PHR
HALSA - Q9HP89 PHR
SULSO - Q97VY1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
298_S	301_H	4.373	1.00
228_Y	233_N	3.864	1.00
314_L	335_V	3.585	1.00
303_E	307_R	3.490	1.00
323_R	354_H	3.388	1.00
302_F	350_R	3.302	1.00
302_F	306_T	3.290	1.00
285_N	291_A	3.185	1.00
320_R	409_E	2.958	1.00
193_L	239_V	2.910	1.00
57_R	61_R	2.853	1.00
91_F	121_H	2.723	1.00
318_G	332_P	2.686	1.00
393_M	403_V	2.655	1.00
52_G	233_N	2.570	1.00
89_T	119_A	2.490	1.00
92_H	118_T	2.416	1.00
13_P	238_E	2.399	1.00
92_H	120_G	2.387	1.00
57_R	66_D	2.350	1.00
323_R	358_R	2.322	1.00
260_K	263_Y	2.314	1.00
312_Y	339_F	2.285	1.00
72_G	77_V	2.279	1.00
55_A	187_A	2.261	1.00
6_H	29_P	2.236	1.00
77_V	80_A	2.236	1.00
186_H	190_T	2.204	1.00
186_H	238_E	2.179	1.00
296_Q	301_H	2.173	1.00
271_N	370_N	2.144	1.00
332_P	402_F	2.109	1.00
15_N	93_A	2.080	1.00
321_Q	325_E	2.071	1.00
90_V	111_L	2.065	1.00
4_Y	17_G	2.053	1.00
190_T	238_E	2.019	1.00
194_A	242_A	1.998	1.00
391_S	395_K	1.958	1.00
324_A	406_Y	1.947	1.00
73_D	76_S	1.945	1.00
311_G	316_D	1.942	1.00
49_L	231_A	1.915	1.00
188_A	191_D	1.906	1.00
325_E	406_Y	1.898	1.00
354_H	358_R	1.888	1.00
303_E	306_T	1.875	1.00
52_G	185_G	1.875	1.00
352_E	368_A	1.869	1.00
4_Y	15_N	1.861	1.00
242_A	245_D	1.809	1.00
213_A	221_A	1.798	1.00
89_T	117_D	1.795	1.00
223_S	261_Y	1.788	1.00
80_A	84_E	1.752	1.00
143_Y	263_Y	1.750	1.00
193_L	242_A	1.735	1.00
79_P	114_A	1.721	1.00
48_F	231_A	1.689	1.00
70_R	77_V	1.677	1.00
271_N	369_A	1.668	1.00
253_N	258_I	1.662	1.00
6_H	60_Y	1.659	1.00
151_K	154_P	1.646	1.00
320_R	407_V	1.646	1.00
390_V	393_M	1.643	1.00
240_W	262_R	1.640	1.00
82_A	87_A	1.634	1.00
30_V	81_L	1.605	1.00
59_A	186_H	1.599	1.00
203_S	207_T	1.597	1.00
48_F	228_Y	1.594	1.00
337_A	374_T	1.591	1.00
388_D	392_Q	1.588	1.00
143_Y	266_S	1.581	1.00
29_P	65_S	1.580	1.00
340_L	346_V	1.574	1.00
306_T	357_D	1.569	1.00
70_R	84_E	1.560	1.00
211_L	332_P	1.558	1.00
321_Q	402_F	1.556	1.00
75_E	106_R	1.536	1.00
75_E	79_P	1.532	1.00
55_A	59_A	1.514	1.00
229_L	239_V	1.512	1.00
238_E	242_A	1.502	1.00
163_L	166_V	1.501	1.00
243_V	258_I	1.484	1.00
313_P	317_A	1.480	1.00
356_A	362_Y	1.474	1.00
51_A	184_A	1.469	1.00
189_A	234_I	1.469	1.00
297_N	350_R	1.463	1.00
304_A	309_E	1.461	1.00
108_A	120_G	1.460	1.00
97_D	100_R	1.459	1.00
197_L	201_I	1.449	1.00
312_Y	343_H	1.446	1.00
225_L	261_Y	1.435	1.00
142_F	273_H	1.427	1.00
139_H	263_Y	1.426	1.00
207_T	213_A	1.415	1.00
61_R	66_D	1.407	1.00
59_A	187_A	1.405	1.00
47_A	51_A	1.400	1.00
20_A	23_D	1.399	1.00
243_V	261_Y	1.395	1.00
205_N	260_K	1.391	1.00
284_E	291_A	1.384	1.00
274_L	379_T	1.376	1.00
185_G	188_A	1.374	1.00
281_L	368_A	1.366	1.00
81_L	85_F	1.358	1.00
13_P	190_T	1.355	1.00
138_S	381_T	1.354	1.00
340_L	351_G	1.344	1.00
8_R	95_H	1.344	1.00
131_T	149_A	1.328	1.00
34_D	37_V	1.320	1.00
143_Y	147_Q	1.319	1.00
154_P	158_P	1.317	1.00
3_L	87_A	1.316	1.00
19_H	23_D	1.306	1.00
127_V	146_W	1.300	1.00
16_R	123_D	1.289	1.00
30_V	70_R	1.288	1.00
30_V	78_L	1.286	1.00
98_A	102_N	1.286	1.00
146_W	266_S	1.285	1.00
207_T	221_A	1.284	1.00
243_V	262_R	1.282	1.00
101_R	105_T	1.279	1.00
195_A	199_D	1.278	1.00
172_L	175_P	1.269	1.00
6_H	56_L	1.269	1.00
400_A	404_T	1.263	1.00
242_A	246_A	1.260	1.00
260_K	264_E	1.258	1.00
95_H	100_R	1.257	1.00
350_R	353_R	1.254	1.00
60_Y	65_S	1.243	1.00
100_R	103_R	1.234	1.00
124_H	272_Y	1.223	1.00
264_E	366_N	1.218	1.00
299_D	350_R	1.213	1.00
245_D	249_D	1.212	1.00
166_V	169_D	1.209	1.00
32_V	78_L	1.197	1.00
322_L	359_L	1.195	1.00
314_L	393_M	1.194	1.00
76_S	80_A	1.189	1.00
302_F	346_V	1.185	1.00
7_Q	104_R	1.184	1.00
31_Y	49_L	1.174	1.00
122_V	128_D	1.172	1.00
82_A	116_V	1.171	1.00
164_A	167_H	1.168	1.00
225_L	239_V	1.165	1.00
351_G	371_W	1.157	1.00
83_D	114_A	1.154	1.00
306_T	354_H	1.153	1.00
237_R	241_A	1.153	1.00
364_P	368_A	1.152	1.00
48_F	227_P	1.141	1.00
170_H	176_A	1.139	1.00
280_R	284_E	1.138	1.00
401_A	404_T	1.138	1.00
101_R	276_Y	1.136	1.00
318_G	402_F	1.131	1.00
203_S	206_D	1.131	1.00
35_D	71_E	1.130	1.00
203_S	257_N	1.128	1.00
59_A	63_R	1.128	1.00
208_R	264_E	1.116	1.00
151_K	158_P	1.110	1.00
102_N	106_R	1.109	1.00
97_D	364_P	1.108	1.00
210_D	213_A	1.105	1.00
174_V	177_P	1.105	1.00
28_V	68_L	1.101	1.00
31_Y	53_V	1.100	1.00
33_F	38_L	1.098	1.00
13_P	186_H	1.098	1.00
197_L	243_V	1.094	1.00
185_G	233_N	1.094	1.00
169_D	173_S	1.084	1.00
244_A	262_R	1.077	1.00
321_Q	327_Y	1.075	1.00
173_S	176_A	1.068	1.00
184_A	188_A	1.056	1.00
174_V	178_E	1.054	1.00
5_W	107_V	1.052	1.00
134_D	137_P	1.045	1.00
224_R	327_Y	1.045	1.00
68_L	81_L	1.045	1.00
391_S	394_A	1.043	1.00
266_S	269_E	1.036	1.00
90_V	118_T	1.034	1.00
315_V	335_V	1.029	1.00
58_A	62_E	1.028	1.00
82_A	111_L	1.020	1.00
79_P	83_D	1.018	1.00
315_V	319_M	1.018	1.00
20_A	121_H	1.017	1.00
300_D	304_A	1.016	1.00
105_T	108_A	1.015	1.00
94_A	122_V	1.008	1.00
185_G	189_A	1.006	1.00
171_T	175_P	1.003	1.00
107_V	111_L	1.003	1.00
150_P	153_D	0.999	1.00
302_F	340_L	0.996	1.00
82_A	90_V	0.992	1.00
171_T	174_V	0.991	1.00
183_D	188_A	0.984	1.00
50_A	54_R	0.980	1.00
370_N	374_T	0.979	1.00
105_T	109_D	0.977	1.00
170_H	174_V	0.975	1.00
220_S	224_R	0.974	1.00
194_A	198_D	0.970	1.00
202_A	246_A	0.967	1.00
44_P	358_R	0.963	1.00
147_Q	259_G	0.959	1.00
12_V	63_R	0.953	1.00
74_A	79_P	0.951	0.99
170_H	173_S	0.946	0.99
393_M	400_A	0.945	0.99
3_L	82_A	0.942	0.99
32_V	77_V	0.941	0.99
222_V	327_Y	0.939	0.99
163_L	167_H	0.935	0.99
151_K	155_V	0.934	0.99
41_V	45_K	0.933	0.99
95_H	103_R	0.932	0.99
169_D	174_V	0.927	0.99
152_P	155_V	0.925	0.99
320_R	324_A	0.923	0.99
158_P	161_D	0.920	0.99
28_V	85_F	0.918	0.99
135_A	278_T	0.913	0.99
136_Y	141_Q	0.912	0.99
125_T	272_Y	0.911	0.99
195_A	200_G	0.911	0.99
165_D	168_D	0.910	0.99
54_R	58_A	0.909	0.99
240_W	266_S	0.908	0.99
82_A	85_F	0.906	0.99
44_P	182_P	0.902	0.99
55_A	184_A	0.901	0.99
205_N	257_N	0.896	0.99
92_H	108_A	0.895	0.99
79_P	82_A	0.890	0.99
305_W	319_M	0.887	0.99
93_A	123_D	0.887	0.99
212_A	405_E	0.885	0.99
32_V	72_G	0.884	0.99
145_D	148_Q	0.880	0.99
48_F	233_N	0.879	0.99
79_P	110_A	0.875	0.99
264_E	334_Q	0.872	0.99
125_T	129_P	0.866	0.99
381_T	384_V	0.866	0.99
48_F	52_G	0.864	0.99
72_G	76_S	0.864	0.99
22_T	27_V	0.863	0.99
109_D	113_A	0.862	0.99
197_L	246_A	0.861	0.99
150_P	158_P	0.858	0.99
99_A	103_R	0.855	0.99
272_Y	366_N	0.854	0.99
239_V	261_Y	0.852	0.99
59_A	62_E	0.850	0.99
70_R	80_A	0.849	0.99
126_L	129_P	0.849	0.99
139_H	142_F	0.847	0.99
403_V	407_V	0.846	0.99
188_A	192_R	0.844	0.99
275_L	365_A	0.841	0.99
311_G	401_A	0.840	0.99
169_D	172_L	0.838	0.99
94_A	120_G	0.831	0.99
280_R	283_T	0.831	0.99
388_D	391_S	0.831	0.99
32_V	74_A	0.824	0.99
346_V	350_R	0.824	0.99
28_V	87_A	0.824	0.99
126_L	130_A	0.819	0.98
126_L	146_W	0.818	0.98
33_F	69_V	0.816	0.98
172_L	176_A	0.813	0.98
12_V	60_Y	0.809	0.98
139_H	143_Y	0.809	0.98
337_A	355_F	0.808	0.98
191_D	195_A	0.807	0.98
206_D	257_N	0.807	0.98
48_F	185_G	0.806	0.98
127_V	132_L	0.804	0.98
347_D	350_R	0.803	0.98
281_L	286_Y	0.803	0.98
227_P	360_V	0.799	0.98
91_F	119_A	0.798	0.98
300_D	350_R	0.796	0.98
274_L	281_L	0.793	0.98
282_Q	364_P	0.790	0.98
60_Y	67_L	0.789	0.98
211_L	314_L	0.789	0.98
316_D	320_R	0.788	0.98
41_V	46_R	0.785	0.98
152_P	237_R	0.784	0.98
326_G	360_V	0.783	0.98
225_L	234_I	0.782	0.98
312_Y	390_V	0.781	0.98
182_P	360_V	0.777	0.98
308_G	319_M	0.772	0.98
150_P	154_P	0.771	0.98
171_T	176_A	0.770	0.98
173_S	177_P	0.770	0.98
36_T	73_D	0.769	0.98
390_V	394_A	0.767	0.98
167_H	173_S	0.763	0.98
297_N	301_H	0.761	0.98
139_H	146_W	0.760	0.98
162_A	165_D	0.759	0.98
16_R	20_A	0.759	0.98
14_D	237_R	0.758	0.98
278_T	286_Y	0.757	0.97
78_L	82_A	0.757	0.97
313_P	316_D	0.757	0.97
55_A	233_N	0.757	0.97
331_R	392_Q	0.756	0.97
111_L	116_V	0.756	0.97
96_Y	128_D	0.753	0.97
152_P	156_P	0.752	0.97
99_A	102_N	0.752	0.97
306_T	350_R	0.751	0.97
127_V	266_S	0.749	0.97
168_D	174_V	0.749	0.97
209_D	264_E	0.748	0.97
366_N	370_N	0.746	0.97
167_H	172_L	0.743	0.97
5_W	74_A	0.740	0.97
322_L	328_V	0.740	0.97
94_A	128_D	0.739	0.97
167_H	175_P	0.737	0.97
154_P	160_A	0.735	0.97
48_F	184_A	0.735	0.97
288_S	291_A	0.735	0.97
213_A	220_S	0.735	0.97
152_P	158_P	0.734	0.97
211_L	396_Y	0.733	0.97
140_S	144_D	0.732	0.97
163_L	169_D	0.731	0.97
186_H	189_A	0.730	0.97
373_W	385_R	0.730	0.97
96_Y	125_T	0.729	0.97
154_P	157_A	0.729	0.97
142_F	269_E	0.729	0.97
78_L	81_L	0.728	0.97
40_Q	357_D	0.727	0.97
6_H	12_V	0.727	0.97
170_H	175_P	0.726	0.97
321_Q	406_Y	0.724	0.97
4_Y	29_P	0.722	0.97
309_E	407_V	0.722	0.97
393_M	410_L	0.721	0.97
297_N	346_V	0.719	0.97
138_S	141_Q	0.718	0.97
175_P	178_E	0.718	0.97
20_A	91_F	0.717	0.97
247_Y	258_I	0.717	0.97
263_Y	267_W	0.714	0.96
182_P	224_R	0.713	0.96
68_L	85_F	0.713	0.96
182_P	227_P	0.710	0.96
33_F	53_V	0.705	0.96
112_A	115_G	0.704	0.96
126_L	240_W	0.703	0.96
234_I	239_V	0.701	0.96
68_L	84_E	0.700	0.96
108_A	112_A	0.700	0.96
130_A	277_H	0.700	0.96
197_L	242_A	0.696	0.96
355_F	367_N	0.695	0.96
190_T	194_A	0.694	0.96
271_N	379_T	0.693	0.96
169_D	175_P	0.693	0.96
33_F	71_E	0.687	0.96
3_L	30_V	0.686	0.96
259_G	263_Y	0.686	0.96
193_L	197_L	0.686	0.96
198_D	246_A	0.685	0.95
273_H	277_H	0.685	0.95
385_R	392_Q	0.684	0.95
172_L	177_P	0.683	0.95
201_I	243_V	0.683	0.95
4_Y	91_F	0.680	0.95
95_H	98_A	0.680	0.95
307_R	323_R	0.678	0.95
3_L	81_L	0.677	0.95
184_A	189_A	0.677	0.95
156_P	159_D	0.677	0.95
301_H	346_V	0.675	0.95
147_Q	263_Y	0.674	0.95
193_L	234_I	0.673	0.95
19_H	155_V	0.671	0.95
51_A	55_A	0.670	0.95
247_Y	255_A	0.669	0.95
104_R	107_V	0.668	0.95
70_R	81_L	0.668	0.95
55_A	58_A	0.667	0.95
352_E	371_W	0.667	0.95
247_Y	259_G	0.666	0.95
227_P	327_Y	0.665	0.95
263_Y	266_S	0.665	0.95
82_A	110_A	0.664	0.95
168_D	172_L	0.660	0.94
152_P	157_A	0.660	0.94
281_L	369_A	0.660	0.94
240_W	265_L	0.655	0.94
102_N	105_T	0.655	0.94
402_F	406_Y	0.654	0.94
313_P	403_V	0.654	0.94
380_D	385_R	0.653	0.94
305_W	346_V	0.651	0.94
22_T	161_D	0.651	0.94
169_D	177_P	0.648	0.94
20_A	119_A	0.645	0.94
320_R	323_R	0.644	0.94
349_R	352_E	0.644	0.94
272_Y	363_D	0.642	0.94
142_F	146_W	0.642	0.94
163_L	168_D	0.641	0.94
377_T	382_V	0.641	0.94
169_D	176_A	0.640	0.94
29_P	60_Y	0.637	0.93
151_K	156_P	0.637	0.93
17_G	93_A	0.636	0.93
328_V	359_L	0.636	0.93
108_A	118_T	0.634	0.93
305_W	341_T	0.629	0.93
153_D	156_P	0.628	0.93
321_Q	324_A	0.627	0.93
167_H	171_T	0.622	0.93
285_N	377_T	0.621	0.93
222_V	329_H	0.620	0.92
296_Q	345_L	0.619	0.92
153_D	157_A	0.618	0.92
342_K	380_D	0.617	0.92
137_P	145_D	0.617	0.92
267_W	369_A	0.617	0.92
166_V	172_L	0.616	0.92
168_D	171_T	0.615	0.92
55_A	185_G	0.615	0.92
314_L	332_P	0.615	0.92
45_K	230_A	0.615	0.92
192_R	224_R	0.614	0.92
168_D	173_S	0.612	0.92
5_W	78_L	0.612	0.92
137_P	278_T	0.606	0.92
73_D	106_R	0.605	0.92
319_M	336_V	0.604	0.91
147_Q	266_S	0.603	0.91
19_H	22_T	0.603	0.91
373_W	378_G	0.602	0.91
337_A	367_N	0.601	0.91
270_Q	379_T	0.601	0.91
35_D	38_L	0.600	0.91
201_I	258_I	0.598	0.91
165_D	169_D	0.597	0.91
151_K	157_A	0.597	0.91
387_F	392_Q	0.597	0.91
130_A	276_Y	0.597	0.91
309_E	409_E	0.597	0.91
61_R	65_S	0.596	0.91
143_Y	146_W	0.595	0.91
110_A	113_A	0.595	0.91
342_K	385_R	0.595	0.91
331_R	385_R	0.592	0.91
299_D	303_E	0.591	0.91
164_A	169_D	0.588	0.90
201_I	257_N	0.587	0.90
235_G	238_E	0.586	0.90
80_A	83_D	0.586	0.90
318_G	328_V	0.585	0.90
338_S	374_T	0.583	0.90
342_K	384_V	0.583	0.90
290_D	293_I	0.582	0.90
397_D	400_A	0.580	0.90
76_S	79_P	0.579	0.90
107_V	110_A	0.577	0.90
5_W	92_H	0.577	0.90
372_Q	385_R	0.577	0.90
58_A	187_A	0.576	0.89
162_A	170_H	0.575	0.89
31_Y	37_V	0.575	0.89
125_T	132_L	0.574	0.89
38_L	46_R	0.573	0.89
34_D	74_A	0.573	0.89
153_D	158_P	0.573	0.89
44_P	47_A	0.571	0.89
34_D	38_L	0.571	0.89
98_A	101_R	0.571	0.89
285_N	288_S	0.569	0.89
373_W	380_D	0.568	0.89
52_G	184_A	0.568	0.89
124_H	127_V	0.566	0.89
196_F	223_S	0.564	0.88
3_L	78_L	0.561	0.88
47_A	184_A	0.561	0.88
172_L	178_E	0.560	0.88
166_V	170_H	0.559	0.88
95_H	230_A	0.558	0.88
94_A	129_P	0.558	0.88
33_F	50_A	0.556	0.88
271_N	274_L	0.554	0.88
57_R	67_L	0.553	0.87
262_R	266_S	0.553	0.87
308_G	407_V	0.553	0.87
135_A	138_S	0.552	0.87
207_T	210_D	0.552	0.87
205_N	256_R	0.552	0.87
368_A	379_T	0.551	0.87
212_A	321_Q	0.551	0.87
206_D	209_D	0.549	0.87
145_D	149_A	0.548	0.87
166_V	174_V	0.548	0.87
390_V	400_A	0.547	0.87
163_L	175_P	0.547	0.87
95_H	99_A	0.546	0.87
192_R	195_A	0.546	0.87
190_T	242_A	0.546	0.87
183_D	228_Y	0.545	0.87
122_V	131_T	0.544	0.87
256_R	259_G	0.544	0.87
297_N	302_F	0.543	0.87
385_R	388_D	0.542	0.86
96_Y	99_A	0.542	0.86
210_D	221_A	0.541	0.86
352_E	356_A	0.540	0.86
254_A	257_N	0.540	0.86
356_A	364_P	0.539	0.86
181_L	224_R	0.536	0.86
243_V	246_A	0.536	0.86
223_S	226_S	0.535	0.86
264_E	267_W	0.534	0.86
285_N	292_P	0.534	0.86
330_N	334_Q	0.533	0.86
94_A	130_A	0.533	0.86
239_V	242_A	0.533	0.86
367_N	371_W	0.533	0.86
182_P	362_Y	0.532	0.85
165_D	171_T	0.532	0.85
400_A	410_L	0.532	0.85
272_Y	365_A	0.532	0.85
21_A	91_F	0.531	0.85
6_H	10_L	0.530	0.85
317_A	321_Q	0.530	0.85
163_L	172_L	0.530	0.85
128_D	131_T	0.529	0.85
328_V	355_F	0.528	0.85
334_Q	396_Y	0.528	0.85
334_Q	387_F	0.528	0.85
25_D	88_D	0.527	0.85
370_N	381_T	0.526	0.85
35_D	39_S	0.525	0.85
328_V	336_V	0.524	0.85
339_F	342_K	0.523	0.84
197_L	200_G	0.521	0.84
372_Q	377_T	0.521	0.84
151_K	161_D	0.518	0.84
318_G	336_V	0.517	0.84
205_N	209_D	0.517	0.84
90_V	107_V	0.517	0.84
29_P	32_V	0.516	0.84
275_L	278_T	0.515	0.84
351_G	372_Q	0.514	0.83
152_P	161_D	0.514	0.83
225_L	229_L	0.514	0.83
153_D	160_A	0.513	0.83
54_R	57_R	0.512	0.83
78_L	107_V	0.512	0.83
4_Y	21_A	0.512	0.83
22_T	25_D	0.511	0.83
120_G	128_D	0.511	0.83
258_I	262_R	0.511	0.83
167_H	174_V	0.510	0.83
105_T	120_G	0.509	0.83
208_R	334_Q	0.508	0.83
21_A	27_V	0.508	0.83
125_T	130_A	0.508	0.83
135_A	146_W	0.507	0.83
260_K	366_N	0.504	0.82
340_L	344_L	0.504	0.82
58_A	61_R	0.503	0.82
203_S	221_A	0.502	0.82
53_V	57_R	0.501	0.82
87_A	116_V	0.501	0.82
192_R	200_G	0.501	0.82
238_E	241_A	0.500	0.82
296_Q	299_D	0.500	0.82
8_R	124_H	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1owlA	1	0.9719	100	0.069	Contact Map
3fy4A	1	0.9913	100	0.069	Contact Map
1np7A	1	0.9654	100	0.07	Contact Map
4u63A	1	0.974	100	0.072	Contact Map
1u3dA	1	0.987	100	0.073	Contact Map
4gu5A	1	0.9913	100	0.085	Contact Map
1dnpA	1	0.9654	100	0.086	Contact Map
4k0rA	1	0.9437	100	0.089	Contact Map
4mlpC	1	0.9892	100	0.093	Contact Map
2wq7A	1	0.9892	100	0.094	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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